View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4540-Insertion-14 (Length: 332)

Name: NF4540-Insertion-14
Description: NF4540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4540-Insertion-14
NF4540-Insertion-14
[»] chr8 (2 HSPs)
chr8 (8-320)||(20135352-20135664)
chr8 (85-129)||(21309186-21309230)
[»] chr7 (2 HSPs)
chr7 (8-320)||(44356407-44356719)
chr7 (75-131)||(13059703-13059759)
[»] chr5 (1 HSPs)
chr5 (41-131)||(21110669-21110759)
[»] chr1 (2 HSPs)
chr1 (76-134)||(2890799-2890857)
chr1 (74-134)||(14972572-14972632)
[»] chr4 (1 HSPs)
chr4 (72-132)||(14554186-14554246)
[»] chr3 (1 HSPs)
chr3 (85-136)||(52348541-52348592)
[»] scaffold0031 (1 HSPs)
scaffold0031 (69-127)||(75148-75206)
[»] chr2 (1 HSPs)
chr2 (74-134)||(45721356-45721416)


Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 8 - 320
Target Start/End: Complemental strand, 20135664 - 20135352
Alignment:
Q  8 tgaacttcgtctaaaccgtcaacattatgtggctgcaataacgtttccggtctatcatcattcacctcctccgtcataaaagcatcctcccccaaacaac 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  20135664 tgaacttcgtctaaaccgtcaacattatgtggctgcaataacgtttccggtctatcatcattcacctcctccgtcataaaagcgtcctcccccaaacaac 20135565  T
Q  108 atccccattcctccaccaacttaataaaatgcttgcgatcatcaatcaaaaattcaggagtcgaattcacgatttctatttgaggcgtcaaaatgagaat 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  20135564 atccccattcctccaccaacttaataaaatgcttgcgatcatcaatcaaaaattcaggagtcgaattcacgatttctatttgaggcatcaaaatgagaat 20135465  T
Q  208 acgagcgtagtccaacctcgctctatccgccgtacattcatctaaatgaataaaccgtccaacaccattcacacacatcctgaagagatcatcattccaa 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  20135464 acgagcgtagtccaacctcgctctatccgccgtacattcatctaaatgaataaaccgtccaacacgattcacacacatcctgaagaaatcatcattccaa 20135365  T
Q  308 gcatgtatgggaa 320  Q
    |||||||||||||    
T  20135364 gcatgtatgggaa 20135352  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 129
Target Start/End: Complemental strand, 21309230 - 21309186
Alignment:
Q  85 aaaagcatcctcccccaaacaacatccccattcctccaccaactt 129  Q
    |||||||||||||||||||  ||| ||||||||||||||||||||    
T  21309230 aaaagcatcctcccccaaattacacccccattcctccaccaactt 21309186  T

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Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 8 - 320
Target Start/End: Original strand, 44356407 - 44356719
Alignment:
Q  8 tgaacttcgtctaaaccgtcaacattatgtggctgcaataacgtttccggtctatcatcattcacctcctccgtcataaaagcatcctcccccaaacaac 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  44356407 tgaacttcgtctaaaccgtcaacattatgtggctgcaataacgtttccggtctatcatcattcacctcctccgtcataaaagcgtcctcccccaaacaac 44356506  T
Q  108 atccccattcctccaccaacttaataaaatgcttgcgatcatcaatcaaaaattcaggagtcgaattcacgatttctatttgaggcgtcaaaatgagaat 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  44356507 atccccattcctccaccaacttaataaaatgcttgcgatcatcaatcaaaaattcaggagtcgaattcacgatttctatttgaggcatcaaaatgagaat 44356606  T
Q  208 acgagcgtagtccaacctcgctctatccgccgtacattcatctaaatgaataaaccgtccaacaccattcacacacatcctgaagagatcatcattccaa 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  44356607 acgagcgtagtccaacctcgctctatccgccgtacattcatctaaatgaataaaccgtccaacacgattcacacacatcctgaagaaatcatcattccaa 44356706  T
Q  308 gcatgtatgggaa 320  Q
    |||||||||||||    
T  44356707 gcatgtatgggaa 44356719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 131
Target Start/End: Complemental strand, 13059759 - 13059703
Alignment:
Q  75 cctccgtcataaaagcatcctcccccaaacaacatccccattcctccaccaacttaa 131  Q
    |||||||||||||  ||||||||||||||   || ||||||||||||||||| ||||    
T  13059759 cctccgtcataaacacatcctcccccaaattgcacccccattcctccaccaatttaa 13059703  T

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Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 41 - 131
Target Start/End: Original strand, 21110669 - 21110759
Alignment:
Q  41 tgcaataacgtttccggtctatcatcattcacctcctccgtcataaaagcatcctcccccaaacaacatccccattcctccaccaacttaa 131  Q
    |||||| | ||||||||||||  |||  |||||||||||||||| ||||||||||||||||||  ||| ||||| ||||||||||||||||    
T  21110669 tgcaatcatgtttccggtctagaatcgatcacctcctccgtcatgaaagcatcctcccccaaattacaaccccactcctccaccaacttaa 21110759  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 134
Target Start/End: Complemental strand, 2890857 - 2890799
Alignment:
Q  76 ctccgtcataaaagcatcctcccccaaacaacatccccattcctccaccaacttaataa 134  Q
    |||||||||||| ||||||||||||||    ||||||||||||||||||| ||||||||    
T  2890857 ctccgtcataaaggcatcctcccccaagttgcatccccattcctccaccagcttaataa 2890799  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 134
Target Start/End: Complemental strand, 14972632 - 14972572
Alignment:
Q  74 tcctccgtcataaaagcatcctcccccaaacaacatccccattcctccaccaacttaataa 134  Q
    |||||| ||| ||| |||||||||||||||  ||| ||||| |||||||||||||| ||||    
T  14972632 tcctccctcaaaaaggcatcctcccccaaattacacccccactcctccaccaacttgataa 14972572  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 132
Target Start/End: Original strand, 14554186 - 14554246
Alignment:
Q  72 cctcctccgtcataaaagcatcctcccccaaacaacatccccattcctccaccaacttaat 132  Q
    |||||||||||| ||||||||| ||||| |||  ||||||||||| ||||||||| |||||    
T  14554186 cctcctccgtcaaaaaagcatcatcccctaaatgacatccccatttctccaccaatttaat 14554246  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 85 - 136
Target Start/End: Original strand, 52348541 - 52348592
Alignment:
Q  85 aaaagcatcctcccccaaacaacatccccattcctccaccaacttaataaaa 136  Q
    ||||||||| || ||||||  |||||||| ||||||||||||||||||||||    
T  52348541 aaaagcatcttctcccaaattacatccccgttcctccaccaacttaataaaa 52348592  T

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Target: scaffold0031 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 127
Target Start/End: Original strand, 75148 - 75206
Alignment:
Q  69 tcacctcctccgtcataaaagcatcctcccccaaacaacatccccattcctccaccaac 127  Q
    ||||||||||||||||||| |||||||| |||||    |||||||| ||||||||||||    
T  75148 tcacctcctccgtcataaatgcatcctcacccaagttgcatccccactcctccaccaac 75206  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 134
Target Start/End: Original strand, 45721356 - 45721416
Alignment:
Q  74 tcctccgtcataaaagcatcctcccccaaacaacatccccattcctccaccaacttaataa 134  Q
    |||||| ||| ||| |||||||||||||||  ||| ||||| |||||||||||||| ||||    
T  45721356 tcctccttcaaaaaggcatcctcccccaaattacacccccactcctccaccaacttgataa 45721416  T

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