View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4540-Insertion-15 (Length: 329)
Name: NF4540-Insertion-15
Description: NF4540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4540-Insertion-15 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 8 - 329
Target Start/End: Complemental strand, 51845698 - 51845377
Alignment:
| Q |
8 |
agataaaccattagtcatggctgctttataagcagaacctaatccaccatttcccaaaacctcagcagcagctttcagcaaatcaggtaaaccaaacaca |
107 |
Q |
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| T |
51845698 |
agataaaccattagtcatggctgctttataagcagaacctaatccaccatttcccaaaacctcagcagcagctttcatcaaatcaggtagaccaaacaca |
51845599 |
T |
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| Q |
108 |
cctttttcatcattcaccattacaagatcacccattccaccactcttcgaagaacctctcctagaatccttctttccactactttctgatgctctgctat |
207 |
Q |
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| T |
51845598 |
cctttttcatcattcaccattacaagatcacccattccaccactcttcgaagaacctctcctagaatccttctttccactactttctgatgctctgctat |
51845499 |
T |
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| Q |
208 |
gttttgatgagttatgttttgagataggaacatgaactggaatgatatcttcattgttttctctactcataacactgaaatcatcgtcctttctacgttt |
307 |
Q |
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| T |
51845498 |
gttttgatgagctatgttttgagataggaacatgaactggaatgatatcttcattgttttctctactcataacactgaaatcatcgtcctttctacgttt |
51845399 |
T |
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| Q |
308 |
cgatttaataaacgtgacaaac |
329 |
Q |
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| T |
51845398 |
cgatttaataaacgtgacaaac |
51845377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 139
Target Start/End: Original strand, 7665989 - 7666074
Alignment:
| Q |
54 |
ccatttcccaaaacctcagcagcagctttcagcaaatcaggtaaaccaaacacacctttttcatcattcaccattacaagatcacc |
139 |
Q |
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| T |
7665989 |
ccatttccaagaacttcagcagaagctttcatcaaatcaggtaaaccaaacacacccttctcattattcatcatcacaagctcacc |
7666074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 33 - 146
Target Start/End: Original strand, 18628453 - 18628566
Alignment:
| Q |
33 |
ttataagcagaacctaatccaccatttcccaaaacctcagcagcagctttcagcaaatcaggtaaaccaaacacacctttttcatcattcaccattacaa |
132 |
Q |
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|||||||| || || |||||||| || ||||||||||| || |||||||||| |||||| |||||||||| ||| || |||||||||||||| |||| |
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| T |
18628453 |
ttataagccgatcccaatccaccgttccccaaaacctctgccgcagctttcatcaaatcttgtaaaccaaatgaacccttctcatcattcaccatcacaa |
18628552 |
T |
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| Q |
133 |
gatcacccattcca |
146 |
Q |
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| T |
18628553 |
tatcacctattcca |
18628566 |
T |
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