View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4540-Insertion-16 (Length: 307)
Name: NF4540-Insertion-16
Description: NF4540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4540-Insertion-16 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 102 - 307
Target Start/End: Complemental strand, 1750844 - 1750639
Alignment:
| Q |
102 |
atgttgtgttaatgtcttaccatgccaacgagaattcttatatttcttattgtgttcgctgtgaaattatgttgtttgatattgattcgagaaagttgtt |
201 |
Q |
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| T |
1750844 |
atgttgtgttaatgtcttaccatgccaacgagaattcttatatttcttattgtgttcgctgtgaaattatgttgtttgatattgattcgagaaagttgtt |
1750745 |
T |
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| Q |
202 |
gactaaccattttttctattctgaattgagtgatgaattaggtttaatttggtcaagaacagaataaaatccaatgataaaatgtattagtagccttagc |
301 |
Q |
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| T |
1750744 |
gactaactattttttctattctgaattgagtgatgagttaggtttaatttagtcaagaacagaataaaatcaaatgataaaatgtattagtagccttagc |
1750645 |
T |
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| Q |
302 |
ccttaa |
307 |
Q |
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|||||| |
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| T |
1750644 |
ccttaa |
1750639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 1750890 - 1750838
Alignment:
| Q |
8 |
tagtgttctaaatttgcttccgcttactggtttaaatgtgttgtttatgttgt |
60 |
Q |
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| T |
1750890 |
tagtgttatgaatttgcttccgcttaccggtttaaatgtgttgtttatgttgt |
1750838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 154
Target Start/End: Complemental strand, 664576 - 664515
Alignment:
| Q |
93 |
aaattagtcatgttgtgttaatgtcttaccatgccaacgagaattcttatatttcttattgt |
154 |
Q |
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| T |
664576 |
aaattagacatgttgtgttaatatcttactacgccaatgagaaatcttctatttcttattgt |
664515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 208
Target Start/End: Complemental strand, 6005050 - 6004958
Alignment:
| Q |
118 |
ttaccatgccaacgagaattcttatatttcttattgtgttcgctgtgaaattatg--ttgtttgatattgattcgagaaagttgttgactaac |
208 |
Q |
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| T |
6005050 |
ttaccatgccaacgagaaatcttgtatctcttattgtgcttgttgtgaaattatgctttggttgatatcgattctaggaagttattgagtaac |
6004958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 25322163 - 25322123
Alignment:
| Q |
34 |
ctggtttaaatgtgttgtttatgttgtttacatgtttaaat |
74 |
Q |
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| T |
25322163 |
ctggtttaaacgtgttgttagtgttgtttacatgtttaaat |
25322123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 15547433 - 15547348
Alignment:
| Q |
8 |
tagtgttctaaatttgcttccgcttactggtttaaatgtgttgtttatgttgttt-acatgtttaaattgattagaaataatttaca |
93 |
Q |
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| T |
15547433 |
tagtgttcttaatttgcttccgcttactgatttaaatgtgttgtttatgttgtttaacatgttt-aatcgattagaaataatttaca |
15547348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 14989216 - 14989273
Alignment:
| Q |
37 |
gtttaaatgtgttgtttatgttgttta-catgtttaaattgattagaaataatttaca |
93 |
Q |
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| T |
14989216 |
gtttaaatgtgttttttatgctgtttaacatgtttaaatagattagaaatcatttaca |
14989273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 14989574 - 14989525
Alignment:
| Q |
37 |
gtttaaatgtgttgtttatgttgttt-acatgtttaaattgattagaaat |
85 |
Q |
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| T |
14989574 |
gtttaaatgtgttgtttatgttgtttaatatgtttaaatcgattagaaat |
14989525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 17675818 - 17675904
Alignment:
| Q |
8 |
tagtgttctaaatttgcttccgcttactggtttaaatgtgttgtttatgttgttt-acatgtttaaattgattagaaataatttaca |
93 |
Q |
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| T |
17675818 |
tagtgttcttaattggcttctgcttacgagtttaaatgtgttgtttatgttgtttaacatgcttaaatcgattagaactaatttaca |
17675904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 17676359 - 17676280
Alignment:
| Q |
8 |
tagtgttctaaatttgcttccgcttactggtttaaatgtgttgtttatgtt-gtttacatgtttaaattgattagaaata |
86 |
Q |
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| T |
17676359 |
tagtattcttaatttgttttcgcttaatggtttaaatgtgttgtttatgttggttaacatgtttaaatcgattagaaata |
17676280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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