View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4540-Insertion-3 (Length: 819)

Name: NF4540-Insertion-3
Description: NF4540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4540-Insertion-3
NF4540-Insertion-3
[»] chr5 (14 HSPs)
chr5 (8-617)||(2593125-2593733)
chr5 (632-815)||(2592861-2593044)
chr5 (285-488)||(28832871-28833074)
chr5 (292-478)||(31401071-31401257)
chr5 (292-457)||(25451871-25452036)
chr5 (285-478)||(28806794-28806987)
chr5 (285-478)||(43592943-43593136)
chr5 (285-478)||(43625737-43625930)
chr5 (285-390)||(33768949-33769054)
chr5 (293-478)||(37560673-37560858)
chr5 (288-457)||(40222136-40222305)
chr5 (285-478)||(27445655-27445848)
chr5 (415-479)||(25785375-25785439)
chr5 (294-477)||(19589116-19589303)
[»] chr8 (18 HSPs)
chr8 (285-478)||(33037005-33037198)
chr8 (285-478)||(18869742-18869935)
chr8 (285-478)||(26297205-26297398)
chr8 (285-478)||(26310462-26310655)
chr8 (285-472)||(19751607-19751794)
chr8 (285-488)||(26402397-26402600)
chr8 (292-457)||(28332009-28332174)
chr8 (285-478)||(35741211-35741404)
chr8 (293-472)||(10688344-10688523)
chr8 (293-408)||(33494364-33494479)
chr8 (292-457)||(4813128-4813293)
chr8 (292-457)||(16753162-16753327)
chr8 (285-389)||(34586886-34586990)
chr8 (8-89)||(26297587-26297669)
chr8 (8-89)||(26310844-26310926)
chr8 (292-364)||(590191-590263)
chr8 (292-364)||(25684021-25684093)
chr8 (649-695)||(13241978-13242024)
[»] chr7 (12 HSPs)
chr7 (285-478)||(18409488-18409681)
chr7 (285-457)||(24275950-24276122)
chr7 (285-472)||(21983961-21984148)
chr7 (285-478)||(20000423-20000616)
chr7 (285-478)||(12397581-12397774)
chr7 (285-478)||(21640512-21640705)
chr7 (285-488)||(9189218-9189421)
chr7 (292-457)||(3320690-3320855)
chr7 (285-478)||(16880749-16880942)
chr7 (285-478)||(24265395-24265588)
chr7 (292-457)||(25404771-25404936)
chr7 (400-457)||(30246475-30246532)
[»] chr3 (15 HSPs)
chr3 (285-478)||(1306693-1306886)
chr3 (285-488)||(6793938-6794141)
chr3 (285-478)||(22172380-22172573)
chr3 (285-488)||(3327560-3327763)
chr3 (270-488)||(4386205-4386423)
chr3 (285-478)||(8512916-8513109)
chr3 (288-457)||(10094708-10094877)
chr3 (288-457)||(10201594-10201763)
chr3 (285-478)||(32476162-32476355)
chr3 (285-478)||(2676292-2676485)
chr3 (292-457)||(47878791-47878956)
chr3 (292-457)||(54192622-54192787)
chr3 (293-457)||(10901124-10901288)
chr3 (8-141)||(1307026-1307158)
chr3 (415-488)||(37466975-37467048)
[»] chr1 (8 HSPs)
chr1 (294-488)||(47102061-47102255)
chr1 (269-478)||(47703092-47703299)
chr1 (292-457)||(9525842-9526007)
chr1 (293-478)||(19360638-19360823)
chr1 (285-390)||(41391362-41391467)
chr1 (415-479)||(4650777-4650841)
chr1 (293-337)||(13599206-13599250)
chr1 (415-472)||(13599118-13599175)
[»] chr4 (7 HSPs)
chr4 (285-472)||(16628064-16628251)
chr4 (285-478)||(18856398-18856591)
chr4 (285-478)||(9228404-9228597)
chr4 (285-472)||(3778266-3778453)
chr4 (285-388)||(6742608-6742711)
chr4 (298-472)||(5143961-5144135)
chr4 (285-367)||(3792205-3792287)
[»] chr2 (6 HSPs)
chr2 (285-472)||(39483594-39483781)
chr2 (285-478)||(19345099-19345292)
chr2 (292-457)||(22713136-22713301)
chr2 (297-457)||(31056801-31056961)
chr2 (292-457)||(2740319-2740484)
chr2 (292-457)||(39686361-39686526)
[»] scaffold0259 (1 HSPs)
scaffold0259 (285-478)||(1457-1650)
[»] scaffold0197 (2 HSPs)
scaffold0197 (285-478)||(13502-13695)
scaffold0197 (285-478)||(18381-18574)
[»] chr6 (6 HSPs)
chr6 (294-488)||(24435154-24435348)
chr6 (292-457)||(13882853-13883018)
chr6 (292-457)||(31249353-31249518)
chr6 (285-390)||(33335148-33335253)
chr6 (292-457)||(35201965-35202130)
chr6 (285-478)||(14741643-14741837)
[»] scaffold1764 (1 HSPs)
scaffold1764 (292-457)||(833-998)
[»] scaffold0078 (1 HSPs)
scaffold0078 (415-488)||(32852-32925)
[»] scaffold0006 (3 HSPs)
scaffold0006 (293-337)||(6491-6535)
scaffold0006 (293-337)||(7003-7047)
scaffold0006 (415-472)||(6403-6460)


Alignment Details
Target: chr5 (Bit Score: 520; Significance: 0; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 8 - 617
Target Start/End: Complemental strand, 2593733 - 2593125
Alignment:
Q  8 aggaagacgccttg-agaggtatgtggatgcgaactattcaggcaatttggaccataaaaaatccttatcggattttgtgtttgttgtatttgacacgac 106  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  2593733 aggaagacgccttggaggggtatgtggatgcgaactattcaggcaatttggacgataaaaaatccttatcggattttgtgttttttgtatttgacacgac 2593634  T
Q  107 tatattagttgaaaggcaaaacaacaattcatggtggctatatatctataacttaagtgctggacttttcccttgttgaaaggggtcaaggaagtcatat 206  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  2593633 tatattagttgaaaggcaaaacaacaattcatggtggctatat--ctataacttaagtgctggacatttcccttgttgaaagggttcaaggaagtcatat 2593536  T
Q  207 ggttagaacatagggctggtgagttaggaatcacactcaaagatactgaagacgcattgtactagccaaagtatcgtccacttgacaaatcatcaagtgt 306  Q
    |||||||||||||   ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  2593535 ggttagaacatagaattggtgagttaggaatcacattcaaagatactgaagacgcattgtactagccaaagtaccgtccacttgacaaatcaacaagtgt 2593436  T
Q  307 atcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaaaagatgtttcgaaagacaa 406  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2593435 accatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaaaacatgtttcgaaagacaa 2593336  T
Q  407 tccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgttagagagtaactcctggatggagaaaac 506  Q
    |||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2593335 tccaacaaatgtgttcactaaatcatttcttagatcaaggttcaagcattgatttgaattgatcaattttgttagagagtaactcgtggatggagaaaac 2593236  T
Q  507 aacaaaccagggatgataaatgagtagaaatgagagaatgttctttgagagcttttggatataatttcttgtaatatatttgtattactcattttctctg 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2593235 aacaaaccagggatgataaatgagtagaaatgagagaatgttctttgagagcttttggatataatttcttgtaatatatttgtatcactcattttctctg 2593136  T
Q  607 ctctcttacct 617  Q
    |||||||||||    
T  2593135 ctctcttacct 2593125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 632 - 815
Target Start/End: Complemental strand, 2593044 - 2592861
Alignment:
Q  632 ctgttattggttgcctttgatatttattccacacatctaaatttattcgtgtgatatttgagttcgaagtcaaaacatcaacaactactcttgaactttg 731  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2593044 ctgttattggttgcctttgatatttatttcacacatctaaatttattcgtgtgatatttgagttcgaagtcaaaacatcaacaactactcttgaactttg 2592945  T
Q  732 ataaatgtaaagtacatttaagtgcggcttagattttataaggttgctagatcatttgatacattgtgatgtgagttcgaacct 815  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  2592944 ataaatttaaagtacatttaagtgcggcttagattttataaggttgctagattatttgatacattgtgatgtaagttcgaacct 2592861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 285 - 488
Target Start/End: Complemental strand, 28833074 - 28832871
Alignment:
Q  285 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 384  Q
    |||||| | |||||||||||||||||||||||||| || |||||||| ||||| || || |||||  ||||| |||||||||| || || ||||| || |    
T  28833074 cacttggcgaatcatcaagtgtatcatgagaggacaaagcacattgacattcgcttgcactttgttcgagacatgattgaatcaaaagagattgtggtgg 28832975  T
Q  385 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgttagaga 484  Q
    ||||||  |  ||| |||| ||||   |  ||||||| ||||| ||| | | ||||||||||||||||||||| || || |||||||| ||||||  |||    
T  28832974 aaaaagtggcatcggaagagaatctggcggatgtgtttaccaattcattgcctagatcaaggttcaagcattgcttggacttgatcaagtttgttgaaga 28832875  T
Q  485 gtaa 488  Q
    ||||    
T  28832874 gtaa 28832871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 292 - 478
Target Start/End: Original strand, 31401071 - 31401257
Alignment:
Q  292 caaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaaaaga 391  Q
    |||||||||||||||||||||| ||||| || |||||||| |||||  | || |||||  ||||| |||||||||| || || ||||| ||||| ||||     
T  31401071 caaatcatcaagtgtatcatgaaaggacaaagcacattgacattcgcctgcactttgttagagacatgattgaatcaaaagagattgtggttgagaaagt 31401170  T
Q  392 tgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 478  Q
     |  ||| | || |||||  |  ||||||||||||| ||| | | | ||||||| ||||||||||| || || ||||||||||||||    
T  31401171 ggcatcggaggaaaatccggcggatgtgttcaccaagtcattgcctcgatcaagattcaagcattgcttggacttgatcaattttgt 31401257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 292 - 457
Target Start/End: Original strand, 25451871 - 25452036
Alignment:
Q  292 caaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaaaaga 391  Q
    |||||||||| || |||||||| ||||| ||||||||||| |||||||| || || ||| ||||| |||||||  | ||||| ||  | || || ||||     
T  25451871 caaatcatcaggtatatcatgaaaggacaaaacacattgacattcgtttgcacttcgtcagagacatgattgagacaaaggagatcatggtagagaaagt 25451970  T
Q  392 tgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattg 457  Q
     |  ||| ||||||||||| || |  |||||||||||||| |||  ||||||||||||||||||||    
T  25451971 ggcatcggaagacaatccagcagacatgttcaccaaatcattaccaagatcaaggttcaagcattg 25452036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 285 - 478
Target Start/End: Original strand, 28806794 - 28806987
Alignment:
Q  285 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 384  Q
    |||||| |||||||||||||||||||||| ||||| || |||||||| |||||  | || |||||| | ||| |||||||| |||| || || || ||||    
T  28806794 cacttggcaaatcatcaagtgtatcatgaaaggacaaagcacattgacattcgcctgcactttgtcagtgacatgattgaaaccaaagagatcgtggttg 28806893  T
Q  385 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 478  Q
    ||||||  |  ||| | || |||||  |  ||||||||||||| ||| | | | ||||||| ||||||||||| || || |||||||| |||||    
T  28806894 aaaaagtggcatcggaggagaatccggcggatgtgttcaccaagtcattgcctcgatcaagattcaagcattgcttggacttgatcaagtttgt 28806987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 285 - 478
Target Start/End: Complemental strand, 43593136 - 43592943
Alignment:
Q  285 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 384  Q
    |||||| |||||||||||||||||||||| ||||| || ||||| || |||||  | || |||||  ||||| |||||||||| || || ||||| ||||    
T  43593136 cacttggcaaatcatcaagtgtatcatgaaaggacaaagcacatcgacattcgcctgcactttgttagagacatgattgaatcaaaagagattgtggttg 43593037  T
Q  385 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 478  Q
    | ||||  |  ||| | || |||||  |  ||||||||||||| ||| | | ||||||||| ||||||||||| || || |||||||| |||||    
T  43593036 agaaagtggcatcggaggagaatccggcggatgtgttcaccaagtcattgcctagatcaagattcaagcattgcttggacttgatcaagtttgt 43592943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 285 - 478
Target Start/End: Complemental strand, 43625930 - 43625737
Alignment:
Q  285 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 384  Q
    |||||| |||||||||||||||||||||| ||||| || ||||| || |||||  | || |||||  ||||| |||||||||| || || ||||| ||||    
T  43625930 cacttggcaaatcatcaagtgtatcatgaaaggacaaagcacatcgacattcgcctgcactttgttagagacatgattgaatcaaaagagattgtggttg 43625831  T
Q  385 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 478  Q
    | ||||  |  ||| | || |||||  |  ||||||||||||| ||| | | ||||||||| ||||||||||| || || |||||||| |||||    
T  43625830 agaaagtggcatcggaggagaatccggcggatgtgttcaccaagtcattgcctagatcaagattcaagcattgcttggacttgatcaagtttgt 43625737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 285 - 390
Target Start/End: Complemental strand, 33769054 - 33768949
Alignment:
Q  285 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 384  Q
    |||||| |||||||||||||||||||||| ||||| || |||||||| |||||  | || |||||| ||||| |||||||| | || || ||||| ||||    
T  33769054 cacttggcaaatcatcaagtgtatcatgaaaggacaaagcacattgacattcgcctgcactttgtcagagacatgattgaaacaaaagagattgtggttg 33768955  T
Q  385 aaaaag 390  Q
    | ||||    
T  33768954 agaaag 33768949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 293 - 478
Target Start/End: Original strand, 37560673 - 37560858
Alignment:
Q  293 aaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaaaagat 392  Q
    ||||||||||||||||||||| ||||| || |||||||| |||||  | || |||||| ||||| |||||||| | || || ||||| ||||| ||||      
T  37560673 aaatcatcaagtgtatcatgaaaggacaaagcacattgacattcgcctgcactttgtcagagacatgattgaaacaaaagagattgtggttgagaaagtg 37560772  T
Q  393 gtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 478  Q
    |  ||| | || |||||  |  ||||||||||||| ||| | | | ||||||| ||||||||||| || || |||||||| |||||    
T  37560773 gcatcggaggagaatccggcggatgtgttcaccaagtcattgcctcgatcaagattcaagcattgcttggacttgatcaagtttgt 37560858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 288 - 457
Target Start/End: Original strand, 40222136 - 40222305
Alignment:
Q  288 ttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaa 387  Q
    |||||||||||||| || |||||||| || || ||||||||||| |||||||| ||||| ||| ||||| |||||||  | ||||| ||  | || || |    
T  40222136 ttgacaaatcatcaggtatatcatgaaagaacaaaacacattgacattcgtttgcatttcgtcagagacatgattgagacaaaggagatcatggtggaga 40222235  T
Q  388 aagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattg 457  Q
    |||  |   || |||| |||||| || |  |||||||||||||| |||  ||||||||||||||||||||    
T  40222236 aagtggcaacggaagaaaatccagcagacatgttcaccaaatcattaccaagatcaaggttcaagcattg 40222305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 285 - 478
Target Start/End: Complemental strand, 27445848 - 27445655
Alignment:
Q  285 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 384  Q
    |||||| ||| |||||||||||||||||| ||||| || ||||| || |||||  | || |||||  ||||| |||||||||| || || ||||| ||||    
T  27445848 cacttggcaattcatcaagtgtatcatgaaaggacaaagcacatcgacattcgcctgcactttgttagagacatgattgaatcaaaagagattgtggttg 27445749  T
Q  385 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 478  Q
    | ||||  |  ||| | || |||||  |  |||||||| |||| ||| | | ||||||||| ||||||||||| || || |||||||| |||||    
T  27445748 agaaagtggcatcggaggagaatccggcggatgtgttccccaagtcattgcctagatcaagattcaagcattgcttggacttgatcaagtttgt 27445655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 415 - 479
Target Start/End: Complemental strand, 25785439 - 25785375
Alignment:
Q  415 atgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgtt 479  Q
    |||| |||||||||||| ||| ||||||||||||||| || || ||||| |||||||| ||||||    
T  25785439 atgtattcaccaaatcattacctagatcaaggttcaatcaatgttttgacttgatcaaatttgtt 25785375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 294 - 477
Target Start/End: Complemental strand, 19589303 - 19589116
Alignment:
Q  294 aatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgt----tgttgaaaaa 389  Q
    ||||||||||||||||||||| |||| || |||||||| ||||  || || |||||  ||||| |||||||||| || || |||||     || ||||||    
T  19589303 aatcatcaagtgtatcatgaggggactaagcacattgacattcacttgcactttgttagagacatgattgaatcaaaagagattgtggtgcgtggaaaaa 19589204  T
Q  390 gatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttg 477  Q
    |  |  | |||||| |||||  |  ||||||| ||||| ||| | | ||||||||||||||||||||| || || |||||||| ||||    
T  19589203 gtggcattgaaagagaatccggcggatgtgtttaccaagtcatttcctagatcaaggttcaagcattgcttggacttgatcaagtttg 19589116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 1e-28; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 285 - 478
Target Start/End: Original strand, 33037005 - 33037198
Alignment:
Q  285 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 384  Q
    |||||| |||||||||||||||||||||||||||| || |||||||| ||||| || || |||||  ||||| |||||||||| || || ||||| ||||    
T  33037005 cacttggcaaatcatcaagtgtatcatgagaggacaaagcacattgacattcgcttgcactttgttagagacatgattgaatcaaaagagattgtggttg 33037104  T
Q  385 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 478  Q
    ||||||  |  ||| |||| |||||  |  ||||||||||||| ||| ||| ||||||||| ||||||||||| || || |||||||| |||||    
T  33037105 aaaaagtggcatcggaagagaatccggcggatgtgttcaccaagtcattacctagatcaagattcaagcattgcttggacttgatcaaatttgt 33037198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 285 - 478
Target Start/End: Original strand, 18869742 - 18869935
Alignment:
Q  285 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 384  Q
    |||||| |||||||||||||||||||||||||||| || |||||||| |||||  | || |||||  ||||| |||||||||| || || ||||| ||||    
T  18869742 cacttggcaaatcatcaagtgtatcatgagaggacaaagcacattgacattcgcctgcactttgttagagacatgattgaatcaaaagagattgtggttg 18869841  T
Q  385 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 478  Q
    | ||||  |  ||| | || |||||  |  ||||||||||||| ||| ||| ||||||||| ||||||||||| || || |||||||| |||||    
T  18869842 agaaagtggcatcggaggagaatccggcggatgtgttcaccaagtcattacctagatcaagattcaagcattgcttggacttgatcaaatttgt 18869935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 285 - 478
Target Start/End: Complemental strand, 26297398 - 26297205
Alignment:
Q  285 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 384  Q
    |||||| |||||||||||||||||||||||||||| || |||||||| ||||| || || |||||  ||||| |||||||||| || || ||||| ||||    
T  26297398 cacttggcaaatcatcaagtgtatcatgagaggacaaagcacattgacattcgcttgcactttgttagagacatgattgaatcaaaagagattgtggttg 26297299  T
Q  385 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 478  Q
    | ||||  |  ||| |||| |||||  |  ||||||||||||| ||| | | ||||||||| ||||| ||||| || || |||||||| |||||    
T  26297298 agaaagtggcatcggaagagaatccggcggatgtgttcaccaagtcattgcctagatcaagattcaaacattgcttggacttgatcaagtttgt 26297205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 285 - 478
Target Start/End: Complemental strand, 26310655 - 26310462
Alignment:
Q  285 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 384  Q
    |||||| |||||||||||||||||||||||||||| || |||||||| ||||| || || |||||  ||||| |||||||||| || || ||||| ||||    
T  26310655 cacttggcaaatcatcaagtgtatcatgagaggacaaagcacattgacattcgcttgcactttgttagagacatgattgaatcaaaagagattgtggttg 26310556  T
Q  385 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 478  Q
    | ||||  |  ||| |||| |||||  |  ||||||||||||| ||| | | ||||||||| ||||| ||||| || || |||||||| |||||    
T  26310555 agaaagtggcatcggaagagaatccggcggatgtgttcaccaagtcattgcctagatcaagattcaaacattgcttggacttgatcaagtttgt 26310462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 285 - 472
Target Start/End: Original strand, 19751607 - 19751794
Alignment:
Q  285 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 384  Q
    |||||| ||||||||||||||||||||||||| || || |||||||| ||||| || || |||||  ||||| |||||||||| |  || ||| | || |    
T  19751607 cacttggcaaatcatcaagtgtatcatgagagcacaaagcacattgacattcgcttgcactttgttagagacatgattgaatcaagagagattatggtgg 19751706  T
Q  385 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaa 472  Q
    ||||||  |  ||| |||| |||||  |  ||||||| ||||| ||| ||| ||||||||||||||||||||| || || ||||||||    
T  19751707 aaaaagtggcatcggaagagaatccggcggatgtgtttaccaagtcattacctagatcaaggttcaagcattgcttggacttgatcaa 19751794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 285 - 488
Target Start/End: Original strand, 26402397 - 26402600
Alignment:
Q  285 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 384  Q
    |||||| | ||||||||| |||||||||||||||| || |||||||| ||||| || || |||||  ||||| |||||||||| || | |||||| || |    
T  26402397 cacttggcgaatcatcaaatgtatcatgagaggacaaagcacattgacattcgcttgcactttgttagagacatgattgaatcaaaagtaattgtggtgg 26402496  T
Q  385 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgttagaga 484  Q
    ||||||  |  |||||||| ||||   |  ||||||| ||||| ||| | | |||||||||||||||| |||| || || |||||||| ||||||  |||    
T  26402497 aaaaagtggcatcgaaagagaatctggcggatgtgtttaccaagtcattgcctagatcaaggttcaagtattgcttggacttgatcaagtttgttgaaga 26402596  T
Q  485 gtaa 488  Q
    ||||    
T  26402597 gtaa 26402600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 292 - 457
Target Start/End: Original strand, 28332009 - 28332174
Alignment:
Q  292 caaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaaaaga 391  Q
    |||||||||| ||||||||||||||||| || |||||||| |||||||| || || ||| ||||| |||||||  | ||||| ||  | || || ||||     
T  28332009 caaatcatcaggtgtatcatgagaggacaaagcacattgacattcgtttgcacttcgtcagagacatgattgagactaaggagatcatggtagagaaagt 28332108  T
Q  392 tgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattg 457  Q
     |  ||| ||||||||||| || |  |||||||||||||| |||  |||||||| |||||||||||    
T  28332109 ggcatcggaagacaatccagcagacatgttcaccaaatcattaccaagatcaagattcaagcattg 28332174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 285 - 478
Target Start/End: Complemental strand, 35741404 - 35741211
Alignment:
Q  285 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 384  Q
    |||||| |||||||||||||||||||||| ||||| || |||||||| |||||  | || |||||| ||||| |||||||| | || || ||||| ||||    
T  35741404 cacttggcaaatcatcaagtgtatcatgaaaggacaaagcacattgacattcgcctgcactttgtcagagacatgattgaaacaaaagagattgtggttg 35741305  T
Q  385 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 478  Q
    | ||||  |  ||| | || |||||  |  ||||||||||||| ||| | | | ||||||| ||||||||||| || || |||||||| |||||    
T  35741304 agaaagtggcatcggaggagaatccggcggatgtgttcaccaagtcattgcctcgatcaagattcaagcattgcttggacttgatcaagtttgt 35741211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 293 - 472
Target Start/End: Original strand, 10688344 - 10688523
Alignment:
Q  293 aaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaaaagat 392  Q
    ||||||||||||||||||||| ||||| || ||||| || ||| |  | || |||||  ||||| |||||||||| || || ||||| ||| ||||||      
T  10688344 aaatcatcaagtgtatcatgaaaggacaaagcacatagacattagactgcactttgttagagacatgattgaatcaaaagagattgtggttaaaaaagtg 10688443  T
Q  393 gtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaa 472  Q
    |  ||| | || ||||||||  ||||||||||||| ||| ||| || |||||| ||||||||||| || || ||||||||    
T  10688444 gcatcggaggagaatccaacggatgtgttcaccaagtcattacctaaatcaagattcaagcattgcttggacttgatcaa 10688523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 293 - 408
Target Start/End: Original strand, 33494364 - 33494479
Alignment:
Q  293 aaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaaaagat 392  Q
    ||||||||||||||||||| ||||||| || |||||||| |||||||| || ||| |  ||||| ||||||| || || |||||||| | |||||||| |    
T  33494364 aaatcatcaagtgtatcattagaggacaaagcacattgacattcgtttgcactttattagagacatgattgagtcaaaagaaattgtggctgaaaaagtt 33494463  T
Q  393 gtttcgaaagacaatc 408  Q
    | ||| ||||| ||||    
T  33494464 gcttcaaaagagaatc 33494479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 292 - 457
Target Start/End: Complemental strand, 4813293 - 4813128
Alignment:
Q  292 caaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaaaaga 391  Q
    |||||||||| ||||||||||| ||||| || |||||||| |||||||| || || ||| ||||| |||||||  | ||||| ||  | || || ||||     
T  4813293 caaatcatcaggtgtatcatgaaaggacaaagcacattgacattcgtttgcacttcgtcagagacatgattgagactaaggagatcatggtagagaaagt 4813194  T
Q  392 tgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattg 457  Q
     |  ||| ||||||||||| || |  |||||||||||||| |||  |||||||| |||||||||||    
T  4813193 ggcatcggaagacaatccagcagacatgttcaccaaatcattaccaagatcaagattcaagcattg 4813128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 292 - 457
Target Start/End: Complemental strand, 16753327 - 16753162
Alignment:
Q  292 caaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaaaaga 391  Q
    |||||||||| ||||||||||| ||||| || |||||||| |||||||| || || ||| ||||| |||||||  | ||||| ||  | || || ||||     
T  16753327 caaatcatcaggtgtatcatgaaaggacaaagcacattgacattcgtttgcacttcgtcagagacatgattgagactaaggagatcatggtagagaaagt 16753228  T
Q  392 tgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattg 457  Q
     |  ||| ||||||||||| || |  |||||||||||||| |||  |||||||| |||||||||||    
T  16753227 ggcatcggaagacaatccagcagacatgttcaccaaatcattaccaagatcaagattcaagcattg 16753162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 285 - 389
Target Start/End: Complemental strand, 34586990 - 34586886
Alignment:
Q  285 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 384  Q
    |||||| | |||||||||||||||||||||||||| || |||||||| ||||| || || ||| |  ||||| |||||||||| || || ||||| || |    
T  34586990 cacttggcgaatcatcaagtgtatcatgagaggactaagcacattgacattcgcttgcactttattagagacatgattgaatcaaaagagattgtggtgg 34586891  T
Q  385 aaaaa 389  Q
    |||||    
T  34586890 aaaaa 34586886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 26297669 - 26297587
Alignment:
Q  8 aggaagacgccttg-agaggtatgtggatgcgaactattcaggcaatttggaccataaaaaatccttatcggattttgtgttt 89  Q
    |||||||||| ||| || ||||||| |||||||||||| | |||||| |||||  || |||||||||||||| ||||||||||    
T  26297669 aggaagacgctttggaggggtatgttgatgcgaactatgcgggcaatgtggacactagaaaatccttatcgggttttgtgttt 26297587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 26310926 - 26310844
Alignment:
Q  8 aggaagacgccttg-agaggtatgtggatgcgaactattcaggcaatttggaccataaaaaatccttatcggattttgtgttt 89  Q
    |||||||||| ||| || ||||||| |||||||||||| | |||||| |||||  || |||||||||||||| ||||||||||    
T  26310926 aggaagacgctttggaggggtatgttgatgcgaactatgcgggcaatgtggacactagaaaatccttatcgggttttgtgttt 26310844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 292 - 364
Target Start/End: Original strand, 590191 - 590263
Alignment:
Q  292 caaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattga 364  Q
    |||||||||| || |||||||| ||||| ||||||||||| |||||||| || || ||| ||||| |||||||    
T  590191 caaatcatcaggtatatcatgaaaggacaaaacacattgacattcgtttgcacttcgtcagagacatgattga 590263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 292 - 364
Target Start/End: Original strand, 25684021 - 25684093
Alignment:
Q  292 caaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattga 364  Q
    |||||||||| ||||||||||| ||||| || |||||||| |||||||| || || ||| ||||| |||||||    
T  25684021 caaatcatcaggtgtatcatgaaaggacaaagcacattgacattcgtttgcacttcgtcagagacatgattga 25684093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 649 - 695
Target Start/End: Complemental strand, 13242024 - 13241978
Alignment:
Q  649 tgatatttattccacacatctaaatttattcgtgtgatatttgagtt 695  Q
    ||||| ||||||||||||||||| ||| || ||||||||||||||||    
T  13242024 tgatacttattccacacatctaagttttttagtgtgatatttgagtt 13241978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 1e-28; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 285 - 478
Target Start/End: Complemental strand, 18409681 - 18409488
Alignment:
Q  285 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 384  Q
    |||||| |||||||||||||||||||||||||||| || |||||||| ||||| || || |||||| ||||| |||||||||| || || ||||| ||||    
T  18409681 cacttggcaaatcatcaagtgtatcatgagaggacaaagcacattgacattcgcttgcactttgtcagagacatgattgaatcaaaagagattgtggttg 18409582  T
Q  385 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 478  Q
    |||| |  |  ||| |||| |||||  | |||||||||||||| | | | | ||||||||||||||||||||| || || |||||||| |||||    
T  18409581 aaaaggtggcatcggaagagaatccggcgaatgtgttcaccaagttattgcctagatcaaggttcaagcattgcttggacttgatcaagtttgt 18409488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 285 - 457
Target Start/End: Original strand, 24275950 - 24276122
Alignment:
Q  285 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 384  Q
    |||||| |||||||||||||||||||||||||||| ||  ||||||| ||||| || || |||||  ||||| |||||||||| || || ||||| || |    
T  24275950 cacttggcaaatcatcaagtgtatcatgagaggacaaaggacattgacattcgcttgcactttgtaagagacatgattgaatcaaaagagattgtggtgg 24276049  T
Q  385 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattg 457  Q
    ||||||  |  ||| |||| ||||| ||  ||||||| ||||| ||| ||| |||||||||||||||||||||    
T  24276050 aaaaagtggcatcggaagagaatccgacggatgtgtttaccaagtcattacctagatcaaggttcaagcattg 24276122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 285 - 472
Target Start/End: Complemental strand, 21984148 - 21983961
Alignment:
Q  285 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 384  Q
    |||||| | |||||||||||||||||||||||||| || |||||||| ||||| || || |||||  ||||| |||||||||| || || || || || |    
T  21984148 cacttggcgaatcatcaagtgtatcatgagaggacaaagcacattgacattcgcttgcactttgtaagagacatgattgaatcaaaagagatcgtggtgg 21984049  T
Q  385 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaa 472  Q
    |||||   |  ||| |||| |||||| || ||||||| ||||| ||| | | ||||||||||||||||||||| || || ||||||||    
T  21984048 aaaaaatggcatcggaagagaatccagcagatgtgtttaccaagtcattgcctagatcaaggttcaagcattgcttggacttgatcaa 21983961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 285 - 478
Target Start/End: Complemental strand, 20000616 - 20000423
Alignment:
Q  285 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 384  Q
    |||||| |||||||||||||||||||||| ||||| || |||||||| |||||| | || |||||  ||||| |||||||||| || || ||||| ||||    
T  20000616 cacttggcaaatcatcaagtgtatcatgaaaggacaaagcacattgacattcgtctgcactttgttagagacatgattgaatcaaaagagattgtggttg 20000517  T
Q  385 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 478  Q
    | ||||  |  ||| | || |||||| |  ||||||||||||| ||| | | | ||||||| ||||||||||| || || |||||||| |||||    
T  20000516 agaaagtggcatcggaggagaatccagcggatgtgttcaccaagtcattgcctcgatcaagattcaagcattgcttggacttgatcaagtttgt 20000423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 285 - 478
Target Start/End: Complemental strand, 12397774 - 12397581
Alignment:
Q  285 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 384  Q
    |||||| |||||||||||||||||||||| ||||| || |||||||| |||||  | || |||||  ||||| |||||||||| || || ||||| ||||    
T  12397774 cacttggcaaatcatcaagtgtatcatgaaaggacaaagcacattgacattcgcctgcactttgttagagacatgattgaatcaaaagagattgtggttg 12397675  T
Q  385 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 478  Q
    | ||||  |  ||| | || |||||  |  ||||||||||||| ||| | | ||||||||| ||||||||||| || || |||||||| |||||    
T  12397674 agaaagtggcatcggaggagaatccggcggatgtgttcaccaagtcattgcctagatcaagattcaagcattgcttggacttgatcaagtttgt 12397581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 285 - 478
Target Start/End: Complemental strand, 21640705 - 21640512
Alignment:
Q  285 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 384  Q
    |||||| |||||||||||||||||||||| ||||| || |||||||| |||||  | || |||||  ||||| |||||||||| || || ||||| ||||    
T  21640705 cacttggcaaatcatcaagtgtatcatgaaaggacaaagcacattgacattcgcctgcactttgttagagacatgattgaatcaaaagagattgtggttg 21640606  T
Q  385 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 478  Q
    | ||||  |  ||| | || |||||  |  ||||||||||||| ||| | | ||||||||| ||||||||||| || || |||||||| |||||    
T  21640605 agaaagtggcatcggaggagaatccggcggatgtgttcaccaagtcattgcctagatcaagattcaagcattgcttggacttgatcaaatttgt 21640512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 285 - 488
Target Start/End: Original strand, 9189218 - 9189421
Alignment:
Q  285 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 384  Q
    |||||| |||||||||||||||||||||||||||| || |||||||| ||||| || || |||||  ||||| |||||||||| |  || ||| | || |    
T  9189218 cacttggcaaatcatcaagtgtatcatgagaggacaaagcacattgacattcgcttgcactttgttagagacatgattgaatcgagagagattatggtgg 9189317  T
Q  385 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgttagaga 484  Q
    ||||||  |  ||| |||| ||||   |  ||||||| ||||| ||| | | ||||||||||||||||||||| ||  | |||||||| ||||||  |||    
T  9189318 aaaaagtggcatcggaagagaatctggcggatgtgtttaccaagtcattgcctagatcaaggttcaagcattgcttgaacttgatcaagtttgttgaaga 9189417  T
Q  485 gtaa 488  Q
    ||||    
T  9189418 gtaa 9189421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 292 - 457
Target Start/End: Complemental strand, 3320855 - 3320690
Alignment:
Q  292 caaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaaaaga 391  Q
    |||||||||||||||||||||| ||||| || |||||||| |||||||| || || ||| ||||| |||||||  | ||||| ||  | || || ||||     
T  3320855 caaatcatcaagtgtatcatgaaaggacaaagcacattgacattcgtttgcacttcgtcagagacatgattgagactaaggagatcatggtagagaaagt 3320756  T
Q  392 tgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattg 457  Q
     |  ||| ||||||||||| || |  |||||||||||||| |||  |||||||| |||||||||||    
T  3320755 ggcatcggaagacaatccagcagacatgttcaccaaatcattaccaagatcaagattcaagcattg 3320690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 285 - 478
Target Start/End: Complemental strand, 16880942 - 16880749
Alignment:
Q  285 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 384  Q
    |||||| |||||||||||||||||||||| ||||| || |||||||| |||||  | || |||||  ||||| |||||||||| || || ||||| ||||    
T  16880942 cacttggcaaatcatcaagtgtatcatgaaaggacaaagcacattgacattcgcctgcactttgttagagacatgattgaatcaaaagagattgtggttg 16880843  T
Q  385 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 478  Q
    | ||||  |  ||| | || |||||  |  ||||||||||||| ||| | | | ||||||| ||||||||||| || || |||||||| |||||    
T  16880842 agaaagtggcatcggaggagaatccggcggatgtgttcaccaagtcattgcctcgatcaagattcaagcattgcttggacttgatcaagtttgt 16880749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 285 - 478
Target Start/End: Original strand, 24265395 - 24265588
Alignment:
Q  285 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 384  Q
    |||||| |||||||||||||||||||||| ||||| || |||||||| |||||  | || |||||  ||||| |||||||||| || || ||||| ||||    
T  24265395 cacttggcaaatcatcaagtgtatcatgaaaggacaaagcacattgacattcgcctgcactttgttagagacatgattgaatcaaaagagattgtggttg 24265494  T
Q  385 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 478  Q
    | ||||  |  ||| | || |||||  |  ||||||||||||| ||| | | | ||||||| ||||||||||| || || |||||||| |||||    
T  24265495 agaaagtggcatcggaggagaatccggcggatgtgttcaccaagtcattgcctcgatcaagattcaagcattgcttggacttgatcaagtttgt 24265588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 292 - 457
Target Start/End: Original strand, 25404771 - 25404936
Alignment:
Q  292 caaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaaaaga 391  Q
    |||||||||| ||||||||||| ||||| || |||||||| |||||||| || || ||| ||||| |||||||  | ||||| ||  | || || ||||     
T  25404771 caaatcatcaggtgtatcatgaaaggacaaagcacattgacattcgtttgcacttcgtcagagacatgattgagactaaggagatcatggtagagaaagt 25404870  T
Q  392 tgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattg 457  Q
     |  ||| ||||||||||| || |  |||||||||||||| |||  |||||||| |||||||||||    
T  25404871 ggcatcggaagacaatccagcagacatgttcaccaaatcattaccaagatcaagattcaagcattg 25404936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 400 - 457
Target Start/End: Original strand, 30246475 - 30246532
Alignment:
Q  400 aagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattg 457  Q
    ||||||||||| || |  |||||||||||||| |||  ||||||||||||||||||||    
T  30246475 aagacaatccagcagacatgttcaccaaatcattaccaagatcaaggttcaagcattg 30246532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 285 - 478
Target Start/End: Complemental strand, 1306886 - 1306693
Alignment:
Q  285 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 384  Q
    |||||| |||||||||||||||||||||||||||| || |||||||| ||||| || || |||||  ||||| |||||||||| || || ||||| ||||    
T  1306886 cacttggcaaatcatcaagtgtatcatgagaggacaaagcacattgacattcgcttgcactttgttagagacatgattgaatcaaaagagattgtggttg 1306787  T
Q  385 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 478  Q
    |||| |  |  ||| |||| |||||  |  ||||||||||||| ||| | | ||||||||||||||||||||| || || |||||||| |||||    
T  1306786 aaaaggtggcatcggaagagaatccggcggatgtgttcaccaagtcattgcctagatcaaggttcaagcattgcttggacttgatcaagtttgt 1306693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 285 - 488
Target Start/End: Original strand, 6793938 - 6794141
Alignment:
Q  285 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 384  Q
    |||||| | |||||| ||||||||||||||||||| || |||||||| ||||| || || |||||  ||||| |||||||||| || || ||||| || |    
T  6793938 cacttggcgaatcataaagtgtatcatgagaggacaaagcacattgacattcgcttgcactttgttagagacatgattgaatcaaaagagattgtggtgg 6794037  T
Q  385 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgttagaga 484  Q
    ||||||  |  ||| |||| |||||  | |||||||| ||||| ||| | | ||||||||||||||||||||| || || |||||||| ||||||  |||    
T  6794038 aaaaagtggcatcggaagagaatccggcgaatgtgtttaccaagtcattgcctagatcaaggttcaagcattgcttggacttgatcaagtttgttgaaga 6794137  T
Q  485 gtaa 488  Q
    ||||    
T  6794138 gtaa 6794141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 285 - 478
Target Start/End: Original strand, 22172380 - 22172573
Alignment:
Q  285 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 384  Q
    |||||| |||||||||||||||||||||| ||||| || |||||||| |||||  | || |||||  ||||| |||||||||| || || ||||| ||||    
T  22172380 cacttggcaaatcatcaagtgtatcatgaaaggacaaagcacattgacattcgcctgcactttgttagagacatgattgaatcaaaagagattgtggttg 22172479  T
Q  385 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 478  Q
    ||||||  |  ||| | || |||||  |  ||||||||||||| ||| | | ||||||||| ||||||||||| || || |||||||| |||||    
T  22172480 aaaaagtggcatcggaggagaatccggcggatgtgttcaccaagtcattgcctagatcaagattcaagcattgcttggacttgatcaagtttgt 22172573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 285 - 488
Target Start/End: Original strand, 3327560 - 3327763
Alignment:
Q  285 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 384  Q
    |||||| |||||||||||||||||||||||||||| || |||||| | |||   || || |||||  ||||| |||||||||| || || ||||| || |    
T  3327560 cacttggcaaatcatcaagtgtatcatgagaggactaagcacattcacattttcttgcactttgttagagacatgattgaatcaaaagagattgtggtag 3327659  T
Q  385 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgttagaga 484  Q
    ||||||  |  ||| |||| |||||  |  ||||||| ||||| | | ||| ||||||||| ||||||||||| || || |||||||| ||||||  |||    
T  3327660 aaaaagtggcatcggaagagaatccggcggatgtgttaaccaagtaattacctagatcaagattcaagcattgcttggacttgatcaagtttgttgaaga 3327759  T
Q  485 gtaa 488  Q
    ||||    
T  3327760 gtaa 3327763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 270 - 488
Target Start/End: Original strand, 4386205 - 4386423
Alignment:
Q  270 agccaaagtatcgtccacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatcca 369  Q
    |||||||||  | |||||||| | |||||||||||||||||| ||||||  || | |||||| ||||| || || |||||   |||| |||||||||| |    
T  4386205 agccaaagtgccatccacttggcgaatcatcaagtgtatcattagaggataaagcccattgacattcgcttgcactttgtgaaagacatgattgaatcga 4386304  T
Q  370 aggaaattgttgttgaaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgat 469  Q
    | || ||||| || || |||| ||  |||||||| ||||   |  |||||||||| || ||| ||| |||||||||||||||| |||| || || ||| |    
T  4386305 aagagattgtggtggagaaagttgcatcgaaagagaatctggcggatgtgttcactaagtcattacctagatcaaggttcaagaattgcttggacttggt 4386404  T
Q  470 caattttgttagagagtaa 488  Q
    ||||||||||  |||||||    
T  4386405 caattttgttgaagagtaa 4386423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 285 - 478
Target Start/End: Complemental strand, 8513109 - 8512916
Alignment:
Q  285 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 384  Q
    |||||| |||||||||||||||||||||| ||||| || |||||||| |||||  | || |||||  ||||| |||||||||| || || ||||| ||||    
T  8513109 cacttggcaaatcatcaagtgtatcatgaaaggacaaagcacattgacattcgcctgcactttgttagagacatgattgaatcaaaagagattgtggttg 8513010  T
Q  385 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 478  Q
    | ||||  |  ||| | || |||||  |  ||||||||||||| ||| | | | ||||||| ||||||||||| || || |||||||| |||||    
T  8513009 agaaagtggcatcggaggagaatccggcggatgtgttcaccaagtcattgcctcgatcaagattcaagcattgcttggacttgatcaagtttgt 8512916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 288 - 457
Target Start/End: Complemental strand, 10094877 - 10094708
Alignment:
Q  288 ttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaa 387  Q
    |||||||||||||| ||||||||||| ||||| || |||||||| |||||||| || || ||| ||||| |||||||  | ||||| ||  | || || |    
T  10094877 ttgacaaatcatcaggtgtatcatgaaaggacaaagcacattgacattcgtttgcacttcgtcagagacatgattgagactaaggagatcatggtagaga 10094778  T
Q  388 aagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattg 457  Q
    |||  |  ||| ||||||||||| || |  |||||||||||||| |||  |||||||| |||||||||||    
T  10094777 aagtggcatcggaagacaatccagcagacatgttcaccaaatcattaccaagatcaagattcaagcattg 10094708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 288 - 457
Target Start/End: Complemental strand, 10201763 - 10201594
Alignment:
Q  288 ttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaa 387  Q
    |||||||||||||| ||||||||||| ||||| || |||||||| |||||||| || || ||| ||||| |||||||  | ||||| ||  | || || |    
T  10201763 ttgacaaatcatcaggtgtatcatgaaaggacaaagcacattgacattcgtttgcacttcgtcagagacatgattgagactaaggagatcatggtagaga 10201664  T
Q  388 aagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattg 457  Q
    |||  |  ||| ||||||||||| || |  |||||||||||||| |||  |||||||| |||||||||||    
T  10201663 aagtggcatcggaagacaatccagcagacatgttcaccaaatcattaccaagatcaagattcaagcattg 10201594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 285 - 478
Target Start/End: Complemental strand, 32476355 - 32476162
Alignment:
Q  285 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 384  Q
    |||||| |||||||||||||||||||||| ||||| || |||||||| |||||  | || |||||  ||||| |||||||||| || || ||||| ||||    
T  32476355 cacttggcaaatcatcaagtgtatcatgaaaggacaaagcacattgacattcgcctgcactttgttagagacatgattgaatcaaaagagattgtggttg 32476256  T
Q  385 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 478  Q
    | ||||  |  ||| | || |||||  |  ||||||||||||| ||| | | | ||||||| ||||||||||| || || |||||||| |||||    
T  32476255 agaaagtggcatcggaggagaatccggcggatgtgttcaccaagtcattgcctcgatcaagattcaagcattgcttggacttgatcaagtttgt 32476162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 285 - 478
Target Start/End: Original strand, 2676292 - 2676485
Alignment:
Q  285 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 384  Q
    |||||| |||||||||||||||||||||| ||||| || |||||||| |||||  | || |||||  ||||| |||||||| | || || ||||| ||||    
T  2676292 cacttggcaaatcatcaagtgtatcatgaaaggacaaagcacattgacattcgcctgcactttgttagagacatgattgaaacaaaagagattgtggttg 2676391  T
Q  385 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 478  Q
    | ||||  |  ||| | || |||||  |  ||||||||||||| ||| | | | ||||||| ||||||||||| || || |||||||| |||||    
T  2676392 agaaagtggcatcggaggagaatccggcggatgtgttcaccaagtcattgcctcgatcaagattcaagcattgcttggacttgatcaagtttgt 2676485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 292 - 457
Target Start/End: Complemental strand, 47878956 - 47878791
Alignment:
Q  292 caaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaaaaga 391  Q
    |||||||||| || |||||||| ||||| ||||||||||| |||||||| || || ||  ||||| |||||||  | ||||| ||  | || || ||||     
T  47878956 caaatcatcaggtatatcatgaaaggacaaaacacattgacattcgtttgcacttcgtaagagacatgattgagacaaaggagatcatggtagagaaagt 47878857  T
Q  392 tgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattg 457  Q
     |  ||| ||||||||||| || |  |||||||||||||| |||  ||||||||||||||||||||    
T  47878856 ggcatcggaagacaatccagcagacatgttcaccaaatcattaccaagatcaaggttcaagcattg 47878791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 292 - 457
Target Start/End: Original strand, 54192622 - 54192787
Alignment:
Q  292 caaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaaaaga 391  Q
    |||||||||| || |||||||| ||||| ||||||||||| |||||||| || || ||| ||||| |||||||  | ||||| ||  |  | || ||||     
T  54192622 caaatcatcaggtatatcatgaaaggacaaaacacattgacattcgtttgcacttcgtcagagacatgattgagacaaaggagatcatgatagagaaagt 54192721  T
Q  392 tgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattg 457  Q
     |  ||| ||||||||||| || |  |||||||||||||| |||  ||||||||||||||||||||    
T  54192722 ggcatcggaagacaatccagcagacatgttcaccaaatcattaccaagatcaaggttcaagcattg 54192787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 293 - 457
Target Start/End: Original strand, 10901124 - 10901288
Alignment:
Q  293 aaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaaaagat 392  Q
    ||||||||| || |||||||| ||||| ||||||||||| |||||||| || || ||| ||||| |||||||  | ||||| ||  | || || ||||      
T  10901124 aaatcatcaggtatatcatgaaaggacaaaacacattgacattcgtttgcacttcgtcagagacatgattgagactaaggagatcatggtagagaaagtg 10901223  T
Q  393 gtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattg 457  Q
    |  ||| |||| |||||| || |  |||||||||||||| |||  ||||||||||||||||||||    
T  10901224 gcatcggaagaaaatccagcagacatgttcaccaaatcattaccaagatcaaggttcaagcattg 10901288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 141
Target Start/End: Complemental strand, 1307158 - 1307026
Alignment:
Q  8 aggaagacgccttg-agaggtatgtggatgcgaactattcaggcaatttggaccataaaaaatccttatcggattttgtgtttgttgtatttgacacgac 106  Q
    |||||||||| ||| || ||||||| |||||| ||||| | |||||| |||||  || |||||||||||||| ||||||||||  | | | || ||||||    
T  1307158 aggaagacgctttggaggggtatgttgatgcggactatgcgggcaatgtggacactagaaaatccttatcgggttttgtgtttactctttatggcacgac 1307059  T
Q  107 tatattagttgaaaggcaaaacaacaattcatggt 141  Q
      ||||||||| |||||||| ||||||||| ||||    
T  1307058 --tattagttggaaggcaaatcaacaattcgtggt 1307026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 415 - 488
Target Start/End: Complemental strand, 37467048 - 37466975
Alignment:
Q  415 atgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgttagagagtaa 488  Q
    ||||||| ||||| ||| |||  |||||||||||||||||||| || || |||||||| ||||||  |||||||    
T  37467048 atgtgtttaccaagtcattaccgagatcaaggttcaagcattgtttggacttgatcaaatttgttgaagagtaa 37466975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 4e-22; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 294 - 488
Target Start/End: Original strand, 47102061 - 47102255
Alignment:
Q  294 aatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaaaagatg 393  Q
    |||||||||||||||||||||||||| || |||||||| ||||| || || |||||  ||||| |||||||||| || || ||||| || |||||||  |    
T  47102061 aatcatcaagtgtatcatgagaggacaaagcacattgacattcgcttacactttgttagagacatgattgaatcaaaagagattgtggtggaaaaagtgg 47102160  T
Q  394 tttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgttagagagtaa 488  Q
      ||| |||| ||||   | |||||||| ||||| ||| | | ||||||||||||||||||||| || || |||||||| ||||||  |||||||    
T  47102161 catcggaagagaatcaggcgaatgtgtttaccaagtcattgcctagatcaaggttcaagcattgcttggacttgatcaagtttgttgaagagtaa 47102255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 269 - 478
Target Start/End: Original strand, 47703092 - 47703299
Alignment:
Q  269 tagccaaagtatcgtccacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatcc 368  Q
    |||||||||| || | |||||| | |||||||||||||||||||||||||| || |||||||| ||||| || || |||||  ||||| ||||||||||     
T  47703092 tagccaaagtgtcattcacttggcgaatcatcaagtgtatcatgagaggactaagcacattgacattcgcttgcactttgttagagacatgattgaatca 47703191  T
Q  369 aaggaaattgttgttgaaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattga 468  Q
    || || ||||| || |||||||  |  ||| |||| |||||  |  ||||||| ||||| ||| | | || |||||||||||||||||| || || ||||    
T  47703192 aaagagattgtggtggaaaaag--gcatcggaagagaatccggcggatgtgtttaccaagtcattgcctaaatcaaggttcaagcattgtttggacttga 47703289  T
Q  469 tcaattttgt 478  Q
    |||| |||||    
T  47703290 tcaagtttgt 47703299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 292 - 457
Target Start/End: Original strand, 9525842 - 9526007
Alignment:
Q  292 caaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaaaaga 391  Q
    |||||||||||||||||||||| ||||| || |||||||| |||||||| || || ||| ||||| |||||||  | ||||| ||  | || || ||||     
T  9525842 caaatcatcaagtgtatcatgaaaggacaaagcacattgacattcgtttgcacttcgtcagagacatgattgagactaaggagatcatggtagagaaagt 9525941  T
Q  392 tgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattg 457  Q
     |  ||| ||||||||||| || |  |||||||||||||| |||  |||||||| |||||||||||    
T  9525942 ggcatcggaagacaatccagcagacatgttcaccaaatcattaccaagatcaagattcaagcattg 9526007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 293 - 478
Target Start/End: Original strand, 19360638 - 19360823
Alignment:
Q  293 aaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaaaagat 392  Q
    ||||||||| ||||||||||||||||| || |||||||| ||||  || || |||||  ||||| |||||||||| || || ||||| ||||| ||||      
T  19360638 aaatcatcacgtgtatcatgagaggacaaagcacattgacattcccttgcactttgttagagacatgattgaatcaaaagagattgtggttgataaagtg 19360737  T
Q  393 gtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 478  Q
    |  ||| | || |||||  |  ||||||||||||| ||| | | ||||||||| ||||| ||||| || || |||||||| |||||    
T  19360738 gcatcggatgataatccggcggatgtgttcaccaagtcattgcctagatcaagtttcaatcattgcttggacttgatcaagtttgt 19360823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 285 - 390
Target Start/End: Complemental strand, 41391467 - 41391362
Alignment:
Q  285 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 384  Q
    |||||| |||||||||||||||||||||| ||||| || |||||||| |||||  | || |||||  ||||| |||||||||| || || ||||| ||||    
T  41391467 cacttggcaaatcatcaagtgtatcatgaaaggacaaagcacattgacattcgcctgcactttgttagagacatgattgaatcaaaagagattgtggttg 41391368  T
Q  385 aaaaag 390  Q
    | ||||    
T  41391367 agaaag 41391362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 415 - 479
Target Start/End: Complemental strand, 4650841 - 4650777
Alignment:
Q  415 atgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgtt 479  Q
    ||||||||| ||||||| | ||||||||||||||||| ||||| || || |||||||||||||||    
T  4650841 atgtgttcatcaaatcattgcttagatcaaggttcaaacattgtttggacttgatcaattttgtt 4650777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 293 - 337
Target Start/End: Complemental strand, 13599250 - 13599206
Alignment:
Q  293 aaatcatcaagtgtatcatgagaggaccaaacacattgatattcg 337  Q
    ||||||||||||||||||||||||||| || |||||||| |||||    
T  13599250 aaatcatcaagtgtatcatgagaggacaaagcacattgacattcg 13599206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 415 - 472
Target Start/End: Complemental strand, 13599175 - 13599118
Alignment:
Q  415 atgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaa 472  Q
    ||||||| ||||| ||| | ||||||||||||||||||||||| || || ||||||||    
T  13599175 atgtgtttaccaagtcattgcttagatcaaggttcaagcattgcttggacttgatcaa 13599118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 285 - 472
Target Start/End: Original strand, 16628064 - 16628251
Alignment:
Q  285 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 384  Q
    |||||| |||||||||||||||||||||||||||| || |||||||| ||||  || || |||||  ||||| |||||||||| || || ||||| || |    
T  16628064 cacttggcaaatcatcaagtgtatcatgagaggacaaagcacattgacattcacttgcactttgttagagacatgattgaatcaaaagatattgtggtgg 16628163  T
Q  385 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaa 472  Q
    ||||||  |  ||| |||| ||||   |  ||||||| ||||| ||| ||| ||||||||||||||||||||| || || ||||||||    
T  16628164 aaaaagtggcatcggaagagaatctggcggatgtgtttaccaagtcattacctagatcaaggttcaagcattgcttggacttgatcaa 16628251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 285 - 478
Target Start/End: Complemental strand, 18856591 - 18856398
Alignment:
Q  285 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 384  Q
    |||||| |||||||||||||||||||||| ||||| || |||||||| |||||| | || |||||  ||||| |||||||||| || || ||||| ||||    
T  18856591 cacttggcaaatcatcaagtgtatcatgaaaggacaaagcacattgacattcgtctgcactttgttagagacatgattgaatcaaaagagattgtggttg 18856492  T
Q  385 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 478  Q
    | ||||  |  ||| | || |||||  |  ||||||||||||| ||| ||| | ||||||| ||||||||||| || || |||||||| |||||    
T  18856491 agaaagtggcatcggaggagaatccggcggatgtgttcaccaagtcattacctcgatcaagattcaagcattgcttggacttgatcaagtttgt 18856398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 285 - 478
Target Start/End: Original strand, 9228404 - 9228597
Alignment:
Q  285 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 384  Q
    |||||| |||||||||||||||||||||| ||||| || |||||||| |||||  | || |||||  ||||| |||||||||| || || ||||| ||||    
T  9228404 cacttggcaaatcatcaagtgtatcatgaaaggacaaagcacattgacattcgcctgcactttgttagagacatgattgaatcaaaagagattgtagttg 9228503  T
Q  385 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 478  Q
    | ||||  |  ||| | || |||||  |  ||||||||||||| ||| | | ||||||||| ||||||||||| || || |||||||| |||||    
T  9228504 agaaagtggcatcggaggagaatccggcggatgtgttcaccaagtcattgcctagatcaagattcaagcattgcttggacttgatcaaatttgt 9228597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 285 - 472
Target Start/End: Complemental strand, 3778453 - 3778266
Alignment:
Q  285 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 384  Q
    |||||| | |||||||||||||||||||||||||| || | |||||| ||||| || || |||||  ||||  |||||||||| || || ||||| || |    
T  3778453 cacttggcgaatcatcaagtgtatcatgagaggacaaagcgcattgacattcgcttgcactttgttagagatatgattgaatcaaaagagattgtggtgg 3778354  T
Q  385 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaa 472  Q
    ||||||  |  ||| |||| |||||  |  ||||||| ||||| | | ||| ||||||||||||||||||||| || || ||||||||    
T  3778353 aaaaagtggcatcggaagataatccggcggatgtgtttaccaagtgattacctagatcaaggttcaagcattgcttggacttgatcaa 3778266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 285 - 388
Target Start/End: Original strand, 6742608 - 6742711
Alignment:
Q  285 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 384  Q
    |||||| | |||||||||||||||||||||||||| || |||||||| ||||| || || |||||  ||||| |||||||||| || || ||||| ||||    
T  6742608 cacttggcgaatcatcaagtgtatcatgagaggactaagcacattgacattcgcttgcactttgttagagacatgattgaatcaaaagagattgtggttg 6742707  T
Q  385 aaaa 388  Q
    ||||    
T  6742708 aaaa 6742711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 298 - 472
Target Start/End: Complemental strand, 5144135 - 5143961
Alignment:
Q  298 atcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaaaagatgtttc 397  Q
    |||||||||||||||||||||| || |||||||| ||||| || || |||||| ||||| || || |||| || || || || || | ||| |  |  ||    
T  5144135 atcaagtgtatcatgagaggacaaagcacattgacattcgcttgcactttgtcagagacatggttaaatcaaaagatatcgtggtggtaaaggtggcatc 5144036  T
Q  398 gaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaa 472  Q
    |||||| ||||| ||  ||||||| ||||||||| | | ||||||||||||||||||||| ||  ||||||||||    
T  5144035 gaaagagaatccgacggatgtgtttaccaaatcattgcctagatcaaggttcaagcattgcttgaaattgatcaa 5143961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 285 - 367
Target Start/End: Original strand, 3792205 - 3792287
Alignment:
Q  285 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatc 367  Q
    |||||| | |||||||||||||||||||||||||| || |||||||| ||| | || || |||||  ||||| ||||||||||    
T  3792205 cacttggcgaatcatcaagtgtatcatgagaggactaagcacattgacatttgcttgcactttgttagagacatgattgaatc 3792287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 285 - 472
Target Start/End: Complemental strand, 39483781 - 39483594
Alignment:
Q  285 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 384  Q
    |||||| | ||||||||||||||||||||||| || || |||||||| ||||| || || |||||  ||||| |||||||||| || || ||||| ||||    
T  39483781 cacttggcgaatcatcaagtgtatcatgagagaactaagcacattgacattcgcttgcactttgttagagacatgattgaatcaaaagagattgtggttg 39483682  T
Q  385 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaa 472  Q
    |||| |  |  ||| |||| |||||  |  ||||||||||||| ||| | | ||||||||||||||||||||| || || ||||||||    
T  39483681 aaaaggtggcatcggaagagaatccggcggatgtgttcaccaagtcattgcctagatcaaggttcaagcattgcttggacttgatcaa 39483594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 285 - 478
Target Start/End: Complemental strand, 19345292 - 19345099
Alignment:
Q  285 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 384  Q
    |||||| |||||||||||||||||||||| ||||| || |||||||| |||||  | || |||||| ||||| |||||||| | || || ||||| ||||    
T  19345292 cacttggcaaatcatcaagtgtatcatgaaaggacaaagcacattgacattcgcctgcactttgtcagagacatgattgaaacaaaagagattgtggttg 19345193  T
Q  385 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 478  Q
    | ||||  |  ||| | || |||||  |  ||||||||||||| ||| | | | ||||||| ||||||||||| || || |||||||| |||||    
T  19345192 agaaagtggcatcggaggagaatccggcggatgtgttcaccaagtcattgcctcgatcaagattcaagcattgtttggacttgatcaagtttgt 19345099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 292 - 457
Target Start/End: Complemental strand, 22713301 - 22713136
Alignment:
Q  292 caaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaaaaga 391  Q
    |||||||||| || |||||||| ||||| ||||||||||| |||||||| || || ||  ||||| |||||||  | ||||| ||  | || || ||||     
T  22713301 caaatcatcaggtatatcatgaaaggacaaaacacattgacattcgtttgcacttcgtaagagacatgattgagacaaaggagatcatggtagagaaagt 22713202  T
Q  392 tgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattg 457  Q
     |  ||| ||||||||||| || |  |||||||||||||| |||  ||||||||||||||||||||    
T  22713201 ggcatcggaagacaatccagcagacatgttcaccaaatcattaccaagatcaaggttcaagcattg 22713136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 297 - 457
Target Start/End: Complemental strand, 31056961 - 31056801
Alignment:
Q  297 catcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaaaagatgttt 396  Q
    ||||||||||||||||| ||||  || |||||||| ||||| || || |||||  ||||| |||||||||| || || ||||| || |||||||  |  |    
T  31056961 catcaagtgtatcatgaaaggattaagcacattgacattcgcttccactttgttagagacatgattgaatcaaaagagattgtggtggaaaaagtggcat 31056862  T
Q  397 cgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattg 457  Q
     | |||| |||||  || ||||||| ||||| ||| | | |||||||||||||||||||||    
T  31056861 tggaagagaatccggcatatgtgtttaccaagtcattgcctagatcaaggttcaagcattg 31056801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 292 - 457
Target Start/End: Original strand, 2740319 - 2740484
Alignment:
Q  292 caaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaaaaga 391  Q
    |||| ||||||||||||||||| ||||| || |||||||| |||||||| || || ||| ||||| |||||||  | ||||| ||  | || || ||||     
T  2740319 caaaccatcaagtgtatcatgaaaggacaaagcacattgacattcgtttgcacttcgtcagagacatgattgagacaaaggagatcatggtagagaaagt 2740418  T
Q  392 tgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattg 457  Q
     |  ||| ||||||||||| || |  |||||||||||||| |||  ||| ||| ||||||||||||    
T  2740419 ggcatcggaagacaatccagcagacatgttcaccaaatcattaccaagagcaaagttcaagcattg 2740484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 292 - 457
Target Start/End: Original strand, 39686361 - 39686526
Alignment:
Q  292 caaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaaaaga 391  Q
    |||||||||| ||||||||||| ||||| || |||||||| |||||||| || || ||| ||||| |||||||  | |||||  |  | || || ||||     
T  39686361 caaatcatcaggtgtatcatgaaaggacaaagcacattgacattcgtttgcacttcgtcagagacatgattgagactaaggagctcatggtagagaaagt 39686460  T
Q  392 tgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattg 457  Q
     |  ||| ||||||||||| || |  |||||||||||||| |||  |||||||| |||||||||||    
T  39686461 ggcatcggaagacaatccagcagacatgttcaccaaatcattaccaagatcaagattcaagcattg 39686526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 285 - 478
Target Start/End: Original strand, 1457 - 1650
Alignment:
Q  285 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 384  Q
    |||||| |||||||||||||||||||||| ||||| || |||||||| |||||  | || |||||  ||||| |||||||| | || || || || ||||    
T  1457 cacttggcaaatcatcaagtgtatcatgaaaggacaaagcacattgacattcgcctgcactttgttagagacatgattgaagcaaaagagatcgtggttg 1556  T
Q  385 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 478  Q
    ||||||  |  ||| | || |||||  |  ||||||||||||| ||| | | | ||||||| ||||||||||| || || ||||||||||||||    
T  1557 aaaaagtggcatcggaggagaatccggcggatgtgttcaccaagtcattgcctcgatcaagattcaagcattgcttggacttgatcaattttgt 1650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 285 - 478
Target Start/End: Original strand, 13502 - 13695
Alignment:
Q  285 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 384  Q
    |||||| |||||||||||||||||||||| ||||| || |||||||| |||||  | || |||||  ||||| |||||||||| || || ||||| ||||    
T  13502 cacttggcaaatcatcaagtgtatcatgaaaggacaaagcacattgacattcgcctgcactttgttagagacatgattgaatcaaaagagattgtggttg 13601  T
Q  385 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 478  Q
    | ||||  |  ||| | || |||||  |  ||||||||||||| ||| | | | ||||||| ||||||||||| || || |||||||| |||||    
T  13602 agaaagtggcatcggaggagaatccggcggatgtgttcaccaagtcattgcctcgatcaagattcaagcattgcttggacttgatcaagtttgt 13695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 285 - 478
Target Start/End: Original strand, 18381 - 18574
Alignment:
Q  285 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 384  Q
    |||||| |||||||||||||||||||||| ||||| || |||||||| |||||  | || |||||  ||||| |||||||||| || || ||||| ||||    
T  18381 cacttggcaaatcatcaagtgtatcatgaaaggacaaagcacattgacattcgcctgcactttgttagagacatgattgaatcaaaagagattgtggttg 18480  T
Q  385 aaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 478  Q
    | ||||  |  ||| | || |||||  |  ||||||||||||| ||| | | | ||||||| ||||||||||| || || |||||||| |||||    
T  18481 agaaagtggcatcggaggagaatccggcggatgtgttcaccaagtcattgcctcgatcaagattcaagcattgcttggacttgatcaagtttgt 18574  T

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Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 294 - 488
Target Start/End: Original strand, 24435154 - 24435348
Alignment:
Q  294 aatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaaaagatg 393  Q
    |||||||||||| ||||||||||||| || |||||||| ||||| ||| | ||||   || || |||||||||| || || ||||| || |||||||  |    
T  24435154 aatcatcaagtgcatcatgagaggactaagcacattgacattcgctttaactttgatagaaacatgattgaatcaaaagagattgtggtggaaaaagtgg 24435253  T
Q  394 tttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgttagagagtaa 488  Q
      ||| |||| | |||  |  || |||| ||||| ||| ||| ||||||||||||||||||||| || || |||||||| ||||||  |||||||    
T  24435254 catcggaagaaagtccggcggatatgtttaccaagtcattacctagatcaaggttcaagcattgcttggacttgatcaagtttgttgaagagtaa 24435348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 292 - 457
Target Start/End: Original strand, 13882853 - 13883018
Alignment:
Q  292 caaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaaaaga 391  Q
    |||||||||| ||||||||||| ||||| || |||||||| |||||||| || || ||| ||||| |||||||  | ||||| ||  | || || ||||     
T  13882853 caaatcatcaggtgtatcatgaaaggacaaagcacattgacattcgtttgcacttcgtcagagacatgattgagactaaggagatcatggtagagaaagt 13882952  T
Q  392 tgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattg 457  Q
     |  ||| ||||||||||| || |  |||||||||||||| |||  |||||||| |||||||||||    
T  13882953 ggcatcggaagacaatccagcagacatgttcaccaaatcattaccaagatcaagattcaagcattg 13883018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 292 - 457
Target Start/End: Complemental strand, 31249518 - 31249353
Alignment:
Q  292 caaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaaaaga 391  Q
    |||||||||| ||||||||||| ||||| || |||||||| |||||||| || || ||| ||||| |||||||  | ||||| ||  | || || ||||     
T  31249518 caaatcatcaggtgtatcatgaaaggacaaagcacattgacattcgtttgcacttcgtcagagacatgattgagactaaggagatcatggtagagaaagt 31249419  T
Q  392 tgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattg 457  Q
     |  ||| ||||||||||| || |  |||||||||||||| |||  |||||||| |||||||||||    
T  31249418 ggcatcggaagacaatccagcagacatgttcaccaaatcattaccaagatcaagattcaagcattg 31249353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 285 - 390
Target Start/End: Original strand, 33335148 - 33335253
Alignment:
Q  285 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttg 384  Q
    |||||| |||||||||||||||||||||| ||||| || |||||||| |||||  | || |||||| ||||| |||||||| | || || ||||| ||||    
T  33335148 cacttggcaaatcatcaagtgtatcatgaaaggacaaagcacattgacattcgcctgcactttgtcagagacatgattgaagcaaaagagattgtggttg 33335247  T
Q  385 aaaaag 390  Q
    | ||||    
T  33335248 agaaag 33335253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 292 - 457
Target Start/End: Complemental strand, 35202130 - 35201965
Alignment:
Q  292 caaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaaaaga 391  Q
    |||||||||| ||||||||||| ||||| || |||||||| |||||||| || || ||| ||||| |||||||  | ||||| ||  | || || ||||     
T  35202130 caaatcatcaggtgtatcatgaaaggacaaagcacattgacattcgtttgcacttcgtcagagacatgattgagactaaggagatcatggtagagaaagt 35202031  T
Q  392 tgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattg 457  Q
     |  ||| ||||||||||| || |  |||||||||||||| |||  |||||||| |||||||||||    
T  35202030 ggcatcggaagacaatccagcagacatgttcaccaaatcattaccaagatcaagattcaagcattg 35201965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 285 - 478
Target Start/End: Original strand, 14741643 - 14741837
Alignment:
Q  285 cacttgacaaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaat-ccaaggaaattgttgtt 383  Q
    |||||| |||||||||||||||||||||| ||||| || |||||||| |||||  | || |||||  ||||| ||||||||| | || || ||||| |||    
T  14741643 cacttggcaaatcatcaagtgtatcatgaaaggacaaagcacattgacattcgcctgcactttgttagagacatgattgaatacaaaagagattgtggtt 14741742  T
Q  384 gaaaaagatgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgt 478  Q
    || ||||  |  ||| | || ||| |  |  ||||||||||||| ||| | | ||||||||| ||||||||||| || || |||||||| |||||    
T  14741743 gagaaagtggcatcggaggataattcggcggatgtgttcaccaagtcattgcctagatcaagattcaagcattgcttggacttgatcaagtttgt 14741837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1764 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold1764
Description:

Target: scaffold1764; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 292 - 457
Target Start/End: Original strand, 833 - 998
Alignment:
Q  292 caaatcatcaagtgtatcatgagaggaccaaacacattgatattcgttttcattttgtctgagacttgattgaatccaaggaaattgttgttgaaaaaga 391  Q
    ||||||||||||| |||||||| || || || |||||||| |||||||| || || ||| ||||| |||||||  | ||||| ||  | || || ||||     
T  833 caaatcatcaagtatatcatgaaagaacaaagcacattgacattcgtttgcacttagtcagagacatgattgagacaaaggagatcatggtagagaaagt 932  T
Q  392 tgtttcgaaagacaatccaacaaatgtgttcaccaaatcactacttagatcaaggttcaagcattg 457  Q
     |  ||  ||||||||||| || |  |||||||||||||| |||  ||||||||||||||||||||    
T  933 ggcatcagaagacaatccagcagacatgttcaccaaatcattaccaagatcaaggttcaagcattg 998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 415 - 488
Target Start/End: Complemental strand, 32925 - 32852
Alignment:
Q  415 atgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaattttgttagagagtaa 488  Q
    ||||||| ||||| ||| ||| ||||||||||||||||||||| || || |||||||| ||||||  |||||||    
T  32925 atgtgtttaccaagtcattacctagatcaaggttcaagcattgcttagacttgatcaagtttgttgaagagtaa 32852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 33; Significance: 0.000000005; HSPs: 3)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 293 - 337
Target Start/End: Complemental strand, 6535 - 6491
Alignment:
Q  293 aaatcatcaagtgtatcatgagaggaccaaacacattgatattcg 337  Q
    ||||||||||||||||||||||||||| || |||||||| |||||    
T  6535 aaatcatcaagtgtatcatgagaggacaaagcacattgacattcg 6491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 293 - 337
Target Start/End: Complemental strand, 7047 - 7003
Alignment:
Q  293 aaatcatcaagtgtatcatgagaggaccaaacacattgatattcg 337  Q
    ||||||||||||||||||||||||||| || |||||||| |||||    
T  7047 aaatcatcaagtgtatcatgagaggacaaagcacattgacattcg 7003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 415 - 472
Target Start/End: Complemental strand, 6460 - 6403
Alignment:
Q  415 atgtgttcaccaaatcactacttagatcaaggttcaagcattgatttgaattgatcaa 472  Q
    ||||||| ||||| ||| | ||||||||||||||||||||||| || || ||||||||    
T  6460 atgtgtttaccaagtcattgcttagatcaaggttcaagcattgcttggacttgatcaa 6403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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