View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4540-Insertion-4 (Length: 696)
Name: NF4540-Insertion-4
Description: NF4540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4540-Insertion-4 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 293 - 696
Target Start/End: Complemental strand, 6134823 - 6134419
Alignment:
| Q |
293 |
gaacaatcacacaagttgtttttacattgtatcttcatttaaaacctaaa-gcatgaggtttatggatcatctcactaatatatcaacatctaatttcaa |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
6134823 |
gaacaatcacacaagttgtttttacattgtatcttcatttaaaacctaaaagcatgaggtttatggatcatctcactaatatatcaacatctactttcaa |
6134724 |
T |
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| Q |
392 |
tccagtgtaaaacttataacttacttgacatgccaataatcttcggtgtgggttcatccattcatttgagtatgctaactctcaaatagagaaagctttt |
491 |
Q |
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|| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6134723 |
tctagtgtaaaacttataactcacttgacatgccaataatcttcggtgtgggttcatccattcatttgagtatgctaactctcaaatagagaaagctttt |
6134624 |
T |
|
| Q |
492 |
gctttcacatacattgtaatcaaatcatcgactctaatataaccattggatcatgaagggagtctggatcaacatattagaatttaaacaaccacaaaag |
591 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
6134623 |
gctttcacatacattgtaatcaaatcatcgactctaatataaccattggatcatgaagggagtctggatcaacatattagaatttaaacaaccacacaag |
6134524 |
T |
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| Q |
592 |
tggtttcattgctacatctttatccaaaaatttaagatattggatatacaatatcatctcacttatatgtagctcaacgtccattttcatcaaatatgac |
691 |
Q |
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| T |
6134523 |
tggtttcattactacatctttatccaaaaatttaagatattgaatatacaatatcatctcacttatatgtagctcaacatccattttcatcaaatatgac |
6134424 |
T |
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| Q |
692 |
tcttc |
696 |
Q |
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||||| |
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| T |
6134423 |
tcttc |
6134419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 8 - 294
Target Start/End: Complemental strand, 6135170 - 6134884
Alignment:
| Q |
8 |
attagggataaaagaagcataagaggtgagatttttcttttggttagcacggatcacaagctcactaatttgaatatgttgaggattgaagcaattctta |
107 |
Q |
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| T |
6135170 |
attagggataaaagaagcataagaggtgagatttctcttttggttagcactgatcacaagctcactaatttggatatgttgaggattgaagcaattctta |
6135071 |
T |
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| Q |
108 |
acggatgctggattctcaagggtcggtacactgctagaaaagataaaattagtgtcttgggcgtggctcatttatgtttgaaggaagccatgaatcatcg |
207 |
Q |
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| T |
6135070 |
acgggtgctggattctcgagggtcggtacacttctagaaaagataaaattagtgtcttgggtgtggctcatttatgtttgaaggaagccatgaatcattg |
6134971 |
T |
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| Q |
208 |
catgagttgaaagcaatcacataaattttaacactacattttcaccaaaaatctcaatacattggctatacggagtcccacacttga |
294 |
Q |
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| T |
6134970 |
catgagttgaaagcaatcacataaattttaacactacattttcaccaaaaatctcaatacattggctatacggagtcccacacttga |
6134884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 293 - 696
Target Start/End: Complemental strand, 6121917 - 6121505
Alignment:
| Q |
293 |
gaacaatcacacaagttgtttttacattgtatcttcatttaaaacctaaa-gcatgaggtttatggatcatctcactaatatatcaacatctaattt-ca |
390 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||| || |
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| T |
6121917 |
gaacaatcacacaagttgtttgtacattgtatcttcatttaaaacctaaaagcatgaggtttttggatcatctcactaatatatcaacatctacttttca |
6121818 |
T |
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| Q |
391 |
atccagtgtaaaacttataacttacttgacatgccaataatcttcggtgtgggttcatccattcatttgagtatgctaactctcaaatagagaa------ |
484 |
Q |
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| T |
6121817 |
atccagtgtaaaacttataactcacttgacatgccaataatcttcgatgtgagttcatctattcatttgagtatgctccccgtcaaacagaaaaacttat |
6121718 |
T |
|
| Q |
485 |
agcttttgctttcacatacattgtaatcaaatcatcgactctaatataaccattggatcatgaagggagtctggatcaacatattagaatttaaacaacc |
584 |
Q |
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| T |
6121717 |
agcttttgtattcgcatacactttaatcaaattatcgaatctaatacaaccattggattatgaggggagttctgatcaccatattagaatgtaaacaacc |
6121618 |
T |
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| Q |
585 |
acaaaagtggtttcattgctacatctttatcc-aaaaatttaagatattggatatacaatatcatctcacttatatgtagctcaacgtccattttcatca |
683 |
Q |
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||| |||||||||||| || |||||||||| |||||||||||||||||||||||||| ||| ||| ||| ||||| ||||||| ||||||||||| | |
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| T |
6121617 |
acacaagtggtttcatcaataaatctttatccaaaaaatttaagatattggatatacaacatcttcttgcttgtatgttgctcaacatccattttcatga |
6121518 |
T |
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| Q |
684 |
aatatgactcttc |
696 |
Q |
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| T |
6121517 |
aatatgactcttc |
6121505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 253 - 294
Target Start/End: Complemental strand, 6122018 - 6121977
Alignment:
| Q |
253 |
caaaaatctcaatacattggctatacggagtcccacacttga |
294 |
Q |
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|||| |||||||||||||||||||| |||||||||||||||| |
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| T |
6122018 |
caaatatctcaatacattggctatatggagtcccacacttga |
6121977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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