View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4540-Insertion-5 (Length: 694)

Name: NF4540-Insertion-5
Description: NF4540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4540-Insertion-5
NF4540-Insertion-5
[»] chr2 (1 HSPs)
chr2 (8-694)||(7794016-7794702)


Alignment Details
Target: chr2 (Bit Score: 624; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 624; E-Value: 0
Query Start/End: Original strand, 8 - 694
Target Start/End: Complemental strand, 7794702 - 7794016
Alignment:
Q  8 atccagagttcaattttttgttgttaacaaagtctctctcaac-tttaaaaaatttaccactaaaattttgtcttcgaaaaaacatgttacatgtcttat 106  Q
    |||||||||| |||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7794702 atccagagtttaattttttgttgttaacaaagtctctctctccctttaaaaaatttaccactaaaattttgtcttcgaaaaaacatgttacatgtcttat 7794603  T
Q  107 actaaacatggttactatactatgattaatgaccaagaacaactactgtttcatttctaataattgcacacccatgaatatgaaataggtaactgagtag 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  7794602 actaaacatggttactatactatgattaatgaccaagaacaactactgtttcatttataataattgcacacccatgaatatgaaataggtaactgagtag 7794503  T
Q  207 atagaaattgagtttttaattacttgacttagtttgtttatattcctattgtcaagtatttaaccaaattagtgtgctaattaaaagttgatagtgaaat 306  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  7794502 atagaaaatgagtttttaattacttgacttagtttgtttatattcctattgttaattatttaaccaaattagtgtgctaattaaaagttgatagtgaaat 7794403  T
Q  307 agcaactaacgatgtgattgtgaactagacatctaactttcatacttaggtagattaggtaacaatcaaatttaagtgtgttaatattgaacatagtttg 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7794402 agcaactaacgatgtgattgtgaactagacatctaactttcatacttaggtagattaggtaaccatcaaatttaagtgtgttaatattgaacatagtttg 7794303  T
Q  407 accaaccctacttgggttagtgaagaaggttcttattgcaaagtgtaatttttaccaaaataacggtggatcgtcgcgattcgaacagtctaaacatgta 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7794302 accaaccctacttgggttagtgaagaaggttcttattgcaaagtgtaatttttaccaaaataacggtggatcgtcgcgattcgaacagtctaaacatgta 7794203  T
Q  507 tttagtatatgtttgaaatctctgtaagtttgatcaaatcataatgatgtggtggttttatagaagcttcaaagtatattttttgcagttcgccgtgaat 606  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||    
T  7794202 tttagtatatgtttgaaatctttgtaagtttgatcaaatcatagtgatgtggtggttctatagaagcttcaaagtata-gttttgcagttcgccgtgaat 7794104  T
Q  607 ctaaacctactctaaaaatctgaagatttcaagagtaaaattgtctccctttctattatctttattttagatcacatcatcttcaata 694  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7794103 ctaaacctactctaaaaatctgaagatttcaagagtaaaattgtctccctttctattatctttattttagatcacatcatcttcaata 7794016  T

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