View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4540-Insertion-6 (Length: 663)
Name: NF4540-Insertion-6
Description: NF4540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4540-Insertion-6 |
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| [»] chr6 (4 HSPs) |
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| [»] scaffold0202 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 371; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 209 - 663
Target Start/End: Complemental strand, 31085888 - 31085436
Alignment:
| Q |
209 |
acccaagaatgaagagtgacaggtacacataagcgatgttgctgcattatttcttctctttccctttcttgagccttttacaatgctttcatttttagct |
308 |
Q |
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| T |
31085888 |
acccaagaatgaagagtgacaggtacacataagtgatgttgctgcattatttcttctctttcgctttcttgagccctttaccatgctttcatgtttagct |
31085789 |
T |
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| Q |
309 |
actaacctacattgacataatactcatgcaaggatcagtacttcatatcttatgagctacaatattgcatttgttccatctagatattaattaaaggctt |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
31085788 |
actaacctacattgacataatactcatgcaaggatcagtacttcatatcttatgagctacaatattgcatttgttccatctagatattaattaaaggatt |
31085689 |
T |
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| Q |
409 |
aattctcatnnnnnnnnnnnnctattcaaaacaattaaaggattaattatccatttgcaattacgagcaggacatgatattggccgccacttttctcagc |
508 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31085688 |
aattctcataaaaaaaaatt--tattcaaaacaattaaaggattaattatccatttgcaattacgagcaggacatgatattggccgccacttttctcagc |
31085591 |
T |
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| Q |
509 |
gacatcccctcatttgtggcaagatttgcatcagtttctttcttggtaaattattcctcattctcctcctcaaatatttgtgaagtctctaaccaatcta |
608 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| | |
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| T |
31085590 |
gacatcccctcatttgtggcaagatttgcatcagtttctttcttggtaaattattcctcattctcctccttaaatatttgtaaagtctctaaccaatcca |
31085491 |
T |
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| Q |
609 |
aaatatggaggatggaaaattcagctgctgaatgagttattctttgcctttgaag |
663 |
Q |
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| T |
31085490 |
aaatatggaggatggaaaattcagctgctgaatgagttattctttgcatttgaag |
31085436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 8 - 193
Target Start/End: Complemental strand, 31086932 - 31086749
Alignment:
| Q |
8 |
gttatcagttttgctctctttcctaatttctttcatcaacccaatgttaagtattaaaaaccactaatctcttctaccaacagtggattttctctcaatt |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||| |||||||||||||||||||| ||| |
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| T |
31086932 |
gttatcagttttgctctctttcctaatttctttcatcaacc-aatgt-aagtattaaaaaccactaacctcttctcccaacagtggattttctctccatt |
31086835 |
T |
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| Q |
108 |
ttcgttttctatcagtgttatatgtattcaataataaagcttgattaatgtaacccaagcttacattataatcaatatttggatgt |
193 |
Q |
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| T |
31086834 |
ttcgttttctatcagtgttatatgtattcaataataaagcttgattaatgtaaccggtgcttacattataatcaatatttggatgt |
31086749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 31085944 - 31085891
Alignment:
| Q |
188 |
ggatgtattagttgataatgaacccaagaatgaagagtgacaggtacacataag |
241 |
Q |
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| T |
31085944 |
ggatgtattagttgataatgaacccaagaatgaagagtgacaggtacacataag |
31085891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 295 - 323
Target Start/End: Complemental strand, 31056395 - 31056367
Alignment:
| Q |
295 |
tttcatttttagctactaacctacattga |
323 |
Q |
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| T |
31056395 |
tttcatttttagctactaacctacattga |
31056367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 282 - 359
Target Start/End: Original strand, 6407 - 6484
Alignment:
| Q |
282 |
ccttttacaatgctttcatttttagctactaacctacattgacataatactcatgcaaggatcagtacttcatatctt |
359 |
Q |
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| T |
6407 |
ccttttaccatgttttcatttttagctactaacctacaatgaaatgattctgatgcaagcattggtacttcttatctt |
6484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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