View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4540-Insertion-7 (Length: 621)
Name: NF4540-Insertion-7
Description: NF4540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4540-Insertion-7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 498; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 6 - 527
Target Start/End: Complemental strand, 41485735 - 41485214
Alignment:
| Q |
6 |
cactttgagcaccactcgattgccttcatttgcaccttctctgaaaattctctcttagttactgctttctcattcatttcatcagaaatttttctcttag |
105 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41485735 |
cactttgagcaccactcgattgctttcatttgcaccttctctgaaaattctctcttagttactgctttctcattcatttcatcagaaatttttctcttag |
41485636 |
T |
|
| Q |
106 |
ctgcttcctgaaatggcttaatatcaagttcgcccatccttttcacagaaattatgactcgagcagtggtctttgggcagccaatccactgtgcacaagt |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
41485635 |
ctgcttcctgaaatggcttaatatcaagttcgcccatccttttcacagaaattatgactcgagcactggtctttgggcagccaatccactgtgcacaagt |
41485536 |
T |
|
| Q |
206 |
aaaagtaattaattggacaaaacaaacaatgaaatcatggcaacaaagcaacaggaacaaactacttgaacttattttgcttcaagtttaggcatcagat |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41485535 |
aaaagtaattaattggacaaaacaaacaatgaaatcatggcaacaaagcaacaggaacaaactacttgaacttattttgcttcaagtttaggcatcagat |
41485436 |
T |
|
| Q |
306 |
accttatgattgaatcagtatgaaacaatatgacaaattaactgaatgtaaaaagaaaatctggtcttttcatagacctgacctgatcctaccaattttc |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
41485435 |
accttatgattgaatcagtatgaaacaatatgacaaattaactgaatgtaaaaagaaaatctgctcttttcatagacctgacccgatcctaccaattttc |
41485336 |
T |
|
| Q |
406 |
tcctaaaatgtaaaactttatgaattaaaatcatcatctttggacacaaacaactgaatagctaatagatagtttagacaagcaaccaagttattcacat |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
41485335 |
tcctaaaatgtaaaactttatgaattaaaatcatcatctttggacacaaacaactggatagctaatagacagtttagacaagcaaccaagttattcacat |
41485236 |
T |
|
| Q |
506 |
cataagatgatacgttgataaa |
527 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
41485235 |
cataagatgatacgttgataaa |
41485214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 6 - 528
Target Start/End: Complemental strand, 40752859 - 40752336
Alignment:
| Q |
6 |
cactttgagcaccactcgattgccttcatttgcaccttctctgaaaattctctcttagttactgctttctcattcatttcatcagaaatttttctcttag |
105 |
Q |
| |
|
||||||||||||||||||||||| ||||||| | | |||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40752859 |
cactttgagcaccactcgattgctttcattttccctgcctctgaaagttttctcttagtagctgctttctcattcatttcatcagaaatttttctcttag |
40752760 |
T |
|
| Q |
106 |
ctgcttcctgaaatggcttaatatcaagttcgcccatccttttcacagaaattatgactcgagcagtggtctttgggcagccaatccactgtgcacaa-g |
204 |
Q |
| |
|
|||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||| |||| | |
|
|
| T |
40752759 |
ctgcttccagaaatggcttaatatcaacttcacccatccttttcacagaaattatgacttgagcggtgttctttgggcagccaatccactgtgaacaagg |
40752660 |
T |
|
| Q |
205 |
taaaagtaattaattggacaaaacaaacaatgaaatcatggcaacaaagcaacaggaacaaactacttgaacttattttgcttcaagtttaggcatcaga |
304 |
Q |
| |
|
|||| ||| || || ||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
40752659 |
aaaaaataactacttagacaaaacaaataatgaaatcatggcaacaaagcaacagcaacaaactacctgaacttattttgcttgaagtttaggcatcaga |
40752560 |
T |
|
| Q |
305 |
taccttatgattgaatcagtatgaaacaatatgacaaattaact--gaatgtaaaaagaaaatctggtcttttcatagacctgacctgatcctaccaatt |
402 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||| || ||||||||| |
|
|
| T |
40752559 |
taccttatgattaaaccagtatgaaacaatatgacaaattaactaaaaatgtaaaaagaaaatatgctcttttcatagacctgacccgactctaccaatt |
40752460 |
T |
|
| Q |
403 |
ttctcctaaaatgtaaaactttatgaattaaaatcatcatctttggacacaaacaactgaatagctaatagatagtttagacaagcaaccaagttattca |
502 |
Q |
| |
|
||| ||||||||||||||| |||| |||| |||||||| ||||||||||||||||||| |||||||||||| |||| | ||||||||||| || ||||| |
|
|
| T |
40752459 |
ttcacctaaaatgtaaaac--tatgtattacaatcatcaactttggacacaaacaactggatagctaatagacagttgaaacaagcaaccacgtgattca |
40752362 |
T |
|
| Q |
503 |
catcataagatgatacgttgataaat |
528 |
Q |
| |
|
||| | | |||||| |||||| |||| |
|
|
| T |
40752361 |
catgaaaggatgatgcgttgagaaat |
40752336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 71 - 528
Target Start/End: Complemental strand, 41471574 - 41471120
Alignment:
| Q |
71 |
tttctcattcatttcatcagaaatttttctcttagctgcttcctgaaatggcttaatatcaagttcgcccatccttttcacagaaattatgactcgagca |
170 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||| |||||| | |
|
|
| T |
41471574 |
tttctcattcacttcatcagaaaactttctcttagctgcttccaaaaatggcttaatctcaagttctcccatccttttcacagaaattatggctcgagga |
41471475 |
T |
|
| Q |
171 |
gtggtctttgggcagccaatccactgtgcacaagtaaaagtaattaattggacaaaacaaacaatgaaatcatggcaacaaagcaacaggaacaaactac |
270 |
Q |
| |
|
| |||||||||| ||||||||||| | ||||| ||||| ||||| | | ||||| ||||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
41471474 |
gccttctttgggcatccaatccactgcgaacaaggaaaag-aattactggaacaaaccaaacaatgaaatcatggccacaaagcaacagcaacaaactac |
41471376 |
T |
|
| Q |
271 |
ttgaacttattttgcttcaagtttaggcatcagataccttatgattgaatcagtatgaaacaatatgacaaattaactga--atgtaaaaagaaaatctg |
368 |
Q |
| |
|
|||||||||||||||| |||||| ||||||| |||| ||||||||| |||||||||||||||||||||||||| | | ||||||||||||||||| |
|
|
| T |
41471375 |
ctgaacttattttgcttgaagtttgggcatcaaatacaccatgattgaaccagtatgaaacaatatgacaaattaattaataatgtaaaaagaaaatctt |
41471276 |
T |
|
| Q |
369 |
gtcttttcatagacctgacctgatcctaccaa-ttttctcctaaaatgtaaaactttatgaattaaaatcatcatctttggacacaaacaactgaatagc |
467 |
Q |
| |
|
| ||||||||||||||| | ||||||| ||||| ||||||||| |||| ||||||||||||||||||| ||||||||||| ||||| | ||||| |
|
|
| T |
41471275 |
ttgttttcatagacctga-----ttctaccaaattttcaactaaaatgttaaacattatgaattaaaatcatcacctttggacacagacaacgggatagc |
41471181 |
T |
|
| Q |
468 |
taatagatagtttagacaagcaaccaagttattcacatcataagatgatacgttgataaat |
528 |
Q |
| |
|
|| ||| |||| | ||||||||||| | |||||||| ||| ||||||| ||||| |||| |
|
|
| T |
41471180 |
aaacagacagttgaaacaagcaaccacatgattcacataataggatgataggttgaaaaat |
41471120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 71 - 528
Target Start/End: Complemental strand, 41478462 - 41478008
Alignment:
| Q |
71 |
tttctcattcatttcatcagaaatttttctcttagctgcttcctgaaatggcttaatatcaagttcgcccatccttttcacagaaattatgactcgagca |
170 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||| |||||| | |
|
|
| T |
41478462 |
tttctcattcacttcatcagaaaactttctcttagctgcttccaaaaatggcttaatctcaagttctcccatccttttcacagaaattatggctcgagga |
41478363 |
T |
|
| Q |
171 |
gtggtctttgggcagccaatccactgtgcacaagtaaaagtaattaattggacaaaacaaacaatgaaatcatggcaacaaagcaacaggaacaaactac |
270 |
Q |
| |
|
| |||||||||| ||||||||||| | ||||| ||||| ||||| | | ||||| ||||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
41478362 |
gccttctttgggcatccaatccactgcgaacaaggaaaag-aattactggaacaaaccaaacaatgaaatcatggccacaaagcaacagcaacaaactac |
41478264 |
T |
|
| Q |
271 |
ttgaacttattttgcttcaagtttaggcatcagataccttatgattgaatcagtatgaaacaatatgacaaattaactga--atgtaaaaagaaaatctg |
368 |
Q |
| |
|
|||||||||||||||| |||||| ||||||| |||| ||||||||| |||||||||||||||||||||||||| | | ||||||||||||||||| |
|
|
| T |
41478263 |
ctgaacttattttgcttgaagtttgggcatcaaatacaccatgattgaaccagtatgaaacaatatgacaaattaattaataatgtaaaaagaaaatctt |
41478164 |
T |
|
| Q |
369 |
gtcttttcatagacctgacctgatcctaccaa-ttttctcctaaaatgtaaaactttatgaattaaaatcatcatctttggacacaaacaactgaatagc |
467 |
Q |
| |
|
| ||||||||||||||| | ||||||| ||||| ||||||||| |||| ||||||||||||||||||| ||||||||||| ||||| | ||||| |
|
|
| T |
41478163 |
ttgttttcatagacctga-----ttctaccaaattttcaactaaaatgttaaacattatgaattaaaatcatcacctttggacacagacaacgggatagc |
41478069 |
T |
|
| Q |
468 |
taatagatagtttagacaagcaaccaagttattcacatcataagatgatacgttgataaat |
528 |
Q |
| |
|
|| ||| |||| | ||||||||||| | |||||||| ||| ||||||| ||||| |||| |
|
|
| T |
41478068 |
aaacagacagttgaaacaagcaaccacatgattcacataataggatgataggttgaaaaat |
41478008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 524 - 621
Target Start/End: Complemental strand, 41485153 - 41485056
Alignment:
| Q |
524 |
taaatacatgtgaacaagacacgtcttccaagcaacttaaataagatttcaactacatgatttgaatgtttgcaaacaggacacttttcttttagtag |
621 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41485153 |
taaatacatgtgaacaagacacgtcttccaagcaacttaaataagatttcaactacatgatttgaatgtttgcaaacaggacacttttcttttagtag |
41485056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 524 - 599
Target Start/End: Complemental strand, 40752275 - 40752199
Alignment:
| Q |
524 |
taaatacatgtgaacaagacac-gtcttccaagcaacttaaataagatttcaactacatgatttgaatgtttgcaaa |
599 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| |||||||| |||| |||||||||||||||||||||| |
|
|
| T |
40752275 |
taaatacatgtgaacaagacactgtcttccaagcaacttacataagattccaacaacatgatttgaatgtttgcaaa |
40752199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 387 - 457
Target Start/End: Complemental strand, 40748892 - 40748822
Alignment:
| Q |
387 |
cctgatcctaccaattttctcctaaaatgtaaaactttatgaattaaaatcatcatctttggacacaaaca |
457 |
Q |
| |
|
|||||| ||||||||||| | ||||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
40748892 |
cctgattctaccaattttgacataaaatgtaaaacattatgaattaaaatcataatctttggacacaaaca |
40748822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 315 - 467
Target Start/End: Complemental strand, 40749607 - 40749453
Alignment:
| Q |
315 |
ttgaatcagtatgaaacaatatgacaaattaactgaa--tgtaaaaagaaaatctggtcttttcatagacctgacctgatcctaccaattttctcctaaa |
412 |
Q |
| |
|
||||| |||| ||||||||||||| |||||||| || ||||| |||||||| | ||||||| ||||||| |||||| ||| | |||| | |||||| |
|
|
| T |
40749607 |
ttgaaccagtgtgaaacaatatgaaaaattaacaaaaaatgtaagaagaaaatatattcttttcgtagacctcgcctgattctatcgatttgcacctaaa |
40749508 |
T |
|
| Q |
413 |
atgtaaaactttatgaattaaaatcatcatctttggacacaaacaactgaatagc |
467 |
Q |
| |
|
||| ||| ||||| |||||||| ||| |||||||||||||||||||| ||||| |
|
|
| T |
40749507 |
atgcgaaatattatgcattaaaatgatcgtctttggacacaaacaactggatagc |
40749453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 72 - 269
Target Start/End: Original strand, 16407805 - 16408000
Alignment:
| Q |
72 |
ttctcattcatttcatcagaaatttttctcttagctgcttcctgaaatggcttaatatcaagttcgcccatccttttcacagaaattatgactcgagcag |
171 |
Q |
| |
|
|||||||||| |||||| || | ||||||||||||||||||| |||||||||||||||||||| |||||| ||||| | | |||||||||| || || |
|
|
| T |
16407805 |
ttctcattcacttcatccgagaactttctcttagctgcttcctcaaatggcttaatatcaagtttacccatcattttcccggcaattatgacttgattag |
16407904 |
T |
|
| Q |
172 |
tggtctttgggcagccaatccactgtgcacaagtaaaagtaattaattggacaaaacaaacaatgaaatcatggcaacaaagcaacaggaacaaacta |
269 |
Q |
| |
|
|| ||||||| || | || |||| || ||||| || |||||| ||| ||||||||||||||||||||| |||| ||||| |||| ||||||||| |
|
|
| T |
16407905 |
tgttctttggacaacgaaaccac--tgaacaagggaagataattacttgaacaaaacaaacaatgaaatcaaggcagcaaagtaacatcaacaaacta |
16408000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 222 - 405
Target Start/End: Original strand, 16412596 - 16412770
Alignment:
| Q |
222 |
acaaaacaaacaatgaaatcatggcaacaaagcaacaggaacaaactacttgaacttattttgcttcaagtttaggcatcagataccttatgattgaatc |
321 |
Q |
| |
|
||||| |||||||| ||||||||| | ||||||||||| |||||||||| ||||||||||||||| |||||| ||||||| | ||| |||||||||| | |
|
|
| T |
16412596 |
acaaaccaaacaattaaatcatggaagcaaagcaacagtaacaaactaccagaacttattttgcttgaagtttgggcatca-aaaccctatgattgaacc |
16412694 |
T |
|
| Q |
322 |
agtatgaaacaatatgacaaattaact--gaatgtaaaaagaaaatctggtcttttcatagacctgacctgatcctaccaattttc |
405 |
Q |
| |
|
|| ||||||||||||||| ||||||||||||||| || | ||||||||||||| ||||||| ||||||| |||| |
|
|
| T |
16412695 |
ag----------tatgacaaattaactaataatgtaaaaagaaaagcttttgttttcatagacctaacctgattctaccaaatttc |
16412770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 68 - 198
Target Start/End: Complemental strand, 52481681 - 52481554
Alignment:
| Q |
68 |
tgctttctcattcatttcatcagaaatttttctcttagctgcttcctgaaatggcttaatatcaagttcgcccatccttttcacagaaattatgactcga |
167 |
Q |
| |
|
||||||| |||||| |||||||||| || ||||||||||||||| |||||||| | ||||||| | |||||||||||||||||||||||| |||| |
|
|
| T |
52481681 |
tgctttcccattcacctcatcagaaaacttcctcttagctgcttccaaaaatggctcagtatcaaggttacccatccttttcacagaaattatggttcga |
52481582 |
T |
|
| Q |
168 |
gcagtggtctttgggcagccaatccactgtg |
198 |
Q |
| |
|
| || |||||||||||||||||||||||| |
|
|
| T |
52481581 |
g--gt-ttctttgggcagccaatccactgtg |
52481554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 524 - 611
Target Start/End: Original strand, 16412884 - 16412969
Alignment:
| Q |
524 |
taaatacatgtgaacaagacac-gtcttccaagcaacttaaataagatttcaactacatgatttgaatgtttgc-aaacaggacactttt |
611 |
Q |
| |
|
|||||||| ||||||||||||| |||||| |||||||||||||| ||||||||| ||||||||||||||||| ||||| ||||||||| |
|
|
| T |
16412884 |
taaatacacgtgaacaagacactgtcttc-aagcaacttaaatatgatttcaac---atgatttgaatgtttgcaaaacatgacactttt |
16412969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 324 - 421
Target Start/End: Original strand, 16410466 - 16410564
Alignment:
| Q |
324 |
tatgaaacaatatgacaaattaac--tgaatgtaaaaagaaaatctggtcttttcatagacctgacctgatcctaccaattttctcctaaaatgtaaaac |
421 |
Q |
| |
|
||||||||||||||| |||||||| ||||| ||||||||||||| |||||||||||| || |||||| |||||||||| |||||||||| |||| |
|
|
| T |
16410466 |
tatgaaacaatatgagaaattaacaaaaaatgt-aaaagaaaatctgtccttttcatagacatggcctgattataccaatttttacctaaaatgtgaaac |
16410564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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