View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4540-Insertion-8 (Length: 531)
Name: NF4540-Insertion-8
Description: NF4540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4540-Insertion-8 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 8 - 531
Target Start/End: Original strand, 36008889 - 36009408
Alignment:
| Q |
8 |
cctatagctgcagaggatctttacacctacttgtaaatattctgaaaatcgaacaggagattaaactagtgagatttgtggtcatgcttcgattctttca |
107 |
Q |
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| T |
36008889 |
cctatagctgcagaggatctttacacctacttgtaaatattctgaaaatcgaacaggagattaaactagtgagatttgtggtcatgcttcgattctttca |
36008988 |
T |
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| Q |
108 |
attatgacacttgaaccggatgtactattgatgaaattaatatcttttttaacnnnnnnnnntaataattttaatccgattttaagggattgagaagtga |
207 |
Q |
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| T |
36008989 |
attatgacacttgaaccggatgtactattgatgaaattaatatcttttttaacaaaaaaata-aataattttaatccgattttaagggattgagaagtga |
36009087 |
T |
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| Q |
208 |
gaattgattgtggttgaacaaattgacaaactaattgattatcggttcaaccaaataattcgatctagttatgacaacattgttgattaactttgaagtt |
307 |
Q |
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| T |
36009088 |
gaattgattgtggttgaacaaattgacaaactaattgattatcggttcaaccaaataattcgatctagttatgacaacattgttgattaactttgaagtt |
36009187 |
T |
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| Q |
308 |
tggtgttttaacttattatattttgaataaattacaattttgattcttaagttactttttggttcttaattaatctgaattaggcacgatgggagagcct |
407 |
Q |
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| T |
36009188 |
tggtgttttaacttat---attttgaataaattacaattttgattcttaagttactttttggttcttaattaatctgaattagggacgatgggagagcct |
36009284 |
T |
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| Q |
408 |
atgcgacaagtgtcataccgacagggatgcaaaacacaatggtaaacgagttaattaaggagaacaaaacgagtggaaaacatatgttattaaagaggtg |
507 |
Q |
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| T |
36009285 |
atgcgacaagtgtcatatcgacagggatgcaaaacacgatggtaaacgagttaattaaggagaacgaaacgagtggaaaacatatgttattaaagaggtg |
36009384 |
T |
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| Q |
508 |
tcaatgagagagatatgccgagaa |
531 |
Q |
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| T |
36009385 |
tcaatgagagagatatgccgagaa |
36009408 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 452
Target Start/End: Original strand, 18055078 - 18055130
Alignment:
| Q |
400 |
gagagcctatgcgacaagtgtcataccgacagggatgcaaaacacaatggtaa |
452 |
Q |
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| T |
18055078 |
gagagcctatgcgacaagtgtcgtaccgacggggatgaaaaacatgatggtaa |
18055130 |
T |
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