View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4540-Insertion-9 (Length: 496)
Name: NF4540-Insertion-9
Description: NF4540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4540-Insertion-9 |
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Alignment Details
Target: chr3 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 8 - 476
Target Start/End: Original strand, 29339096 - 29339568
Alignment:
| Q |
8 |
tttttctttctttgttctttaaattcagccacacgaattgttatctcattggttgtgggggtacttttcactcacgnnnnnnnnaaaatcacacatgttt |
107 |
Q |
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| T |
29339096 |
tttttctttctttgttctttaaattcagccacacgaattgttatctcattggttgtgggggtacttttcactcacgttttttaaaaaatcacacatgttt |
29339195 |
T |
|
| Q |
108 |
aagaactgcttttccaacaaattatgttagaattacgcttt-gagacaatacaaaattgaatgtannnnnnnnnnnnnnn---aatttggaggtcgaaaa |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||| |
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| T |
29339196 |
aagaactgcttttccaacaaattatgttagaattacgcttttgagacaatacgaaattgaatgtattttttattttattttttaatttggaggtcgaaaa |
29339295 |
T |
|
| Q |
204 |
actattttccctatgacatgattgatcacagatattaggtcttgctccggactagacctacggtgacaagctcgctccaccaacacaatagcaattgaga |
303 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
29339296 |
actattttccgtatgacatgattgatcacagatattaggtcttgctccggactagacctacggtgacaagctcgctccaccaacacaatagcaattgaaa |
29339395 |
T |
|
| Q |
304 |
acctcatctagaacacggagcacgcggatcatcatcacaatcatacattaagaagatcatcggtctctcacatctcacctccgacaatatgtcactatct |
403 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
29339396 |
acctcatctagaacacggagcacgcggatcatcatcacaatcatacattaagaagatcatcggcctctcacatctcacctccgacaatatgtcaatatct |
29339495 |
T |
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| Q |
404 |
aacctaagtgagatggatccataaatatactatactcctgccaaaataattaataacaaattgttgaaatgtg |
476 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29339496 |
aacctaagtgagatggatccataaatatactatactcctgccaaaataattaataacaaattgttgaaatgtg |
29339568 |
T |
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