View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4540_high_5 (Length: 380)
Name: NF4540_high_5
Description: NF4540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4540_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 18 - 370
Target Start/End: Complemental strand, 56486066 - 56485709
Alignment:
| Q |
18 |
acaaaacgcaaacctcttcttcgtccacttgttattatgtacatactcttacttcaattaactaactaattcataattcattg------atgatgatgtt |
111 |
Q |
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| T |
56486066 |
acaaaacgcaaacctcttcttcgtccacttgttattatatacatactcttacttcaattaactaactaattcataattcattgctgatgatgatgatgtt |
56485967 |
T |
|
| Q |
112 |
gtagtgtttgttggttcaaattggatcgatcgttccattcattcattcatcgatcactaataatattaaaatactttgctgcattcatattgttctaaat |
211 |
Q |
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| T |
56485966 |
gtagtgtttgttggttcaaattggatcgatcgttccattcattcattcatcgatcactaataatattaaaatactttgctgcattcatattgttctaa-t |
56485868 |
T |
|
| Q |
212 |
ccatcaatgttggaaggaaagatggtagaagaaaatgaacatgaacacggccacgacaactcttctgctgctgctgttgccataaaggtacgtacatggg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56485867 |
ccatcaatgttggaaggaaagatggtagaagaaaatgaacatgaacacggccacgacaactcttctgctgctgctgttgccataaaggtacgtacatggg |
56485768 |
T |
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| Q |
312 |
tacatgtgactgtctaggatcgatccatgatgattttattaagtcactcactgcctttg |
370 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56485767 |
tacatgtgactgtctaggatcgatccatgatgattttattaagtcactcactgcctttg |
56485709 |
T |
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