View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4540_high_6 (Length: 276)

Name: NF4540_high_6
Description: NF4540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4540_high_6
NF4540_high_6
[»] chr1 (7 HSPs)
chr1 (1-177)||(35899790-35899966)
chr1 (8-202)||(17810922-17811116)
chr1 (2-169)||(44613421-44613588)
chr1 (2-132)||(44145722-44145852)
chr1 (41-160)||(11543730-11543849)
chr1 (107-160)||(44794836-44794889)
chr1 (41-93)||(44794789-44794841)
[»] scaffold0017 (2 HSPs)
scaffold0017 (7-251)||(181237-181481)
scaffold0017 (2-232)||(170169-170399)
[»] chr5 (1 HSPs)
chr5 (9-232)||(29506789-29507012)
[»] scaffold0061 (1 HSPs)
scaffold0061 (2-232)||(28393-28623)
[»] chr3 (2 HSPs)
chr3 (47-160)||(8343384-8343497)
chr3 (2-169)||(26728968-26729135)


Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 35899966 - 35899790
Alignment:
Q  1 ccaaattattatttgttaaactcaaagcctccaaattagaaagggcacccattgagaagggaatctttccagacaacttgttattgctcaggtcaatata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  35899966 ccaaattattatttgttaaactcaaagcctccaaattagaaagggcacccattgagaagggaatctttccagacaacttgttatttctcaggtcaatata 35899867  T
Q  101 ttgtaatgaggataaattattccaacaatcagacaactcaccctttaattcattgtttgacaagtccaataatatca 177  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35899866 ttgtaatgaggataaattattccaacaatcagacaactcaccctttaattcattgtttgacaagtccaataatatca 35899790  T

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Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 8 - 202
Target Start/End: Original strand, 17810922 - 17811116
Alignment:
Q  8 attatttgttaaactcaaagcctccaaattagaaagggcacccattgagaagggaatctttccagacaacttgttattgctcaggtcaatatattgtaat 107  Q
    ||||||| ||||| ||||||||||||  |||  |||||||||||||||||||||||||||||| |||||||||||||| || ||||||| | ||||||||    
T  17810922 attatttcttaaaatcaaagcctccatgttaacaagggcacccattgagaagggaatctttcctgacaacttgttatttctgaggtcaacaaattgtaat 17811021  T
Q  108 gaggataaattattccaacaatcagacaactcaccctttaattcattgtttgacaagtccaataatatcaaagtgtcggccttaattttgttgca 202  Q
    || | ||| |||||||||||||||| ||||||||||||||||||||||||||| || ||||| | |  |||| ||| || |||| ||||||||||    
T  17811022 gatgctaagttattccaacaatcaggcaactcaccctttaattcattgtttgataaatccaaaattcccaaaatgttggtcttacttttgttgca 17811116  T

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Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 169
Target Start/End: Complemental strand, 44613588 - 44613421
Alignment:
Q  2 caaattattatttgttaaactcaaagcctccaaattagaaagggcacccattgagaagggaatctttccagacaacttgttattgctcaggtcaatatat 101  Q
    |||| |||||||| ||||| |||||||||||| ||| | ||||| |||||||||||| |||||||||||  | || |||||||| || | ||||| | ||    
T  44613588 caaactattatttcttaaaatcaaagcctccatatttgtaagggtacccattgagaatggaatctttccccataatttgttatttcttaagtcaacaaat 44613489  T
Q  102 tgtaatgaggataaattattccaacaatcagacaactcaccctttaattcattgtttgacaagtccaa 169  Q
    | ||| |||| || |||||||||||||||||  ||||||||||||| || ||||||||| || |||||    
T  44613488 tttaacgaggttagattattccaacaatcaggtaactcaccctttatttgattgtttgataaatccaa 44613421  T

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Target: chr1; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 2 - 132
Target Start/End: Complemental strand, 44145852 - 44145722
Alignment:
Q  2 caaattattatttgttaaactcaaagcctccaaattagaaagggcacccattgagaagggaatctttccagacaacttgttattgctcaggtcaatatat 101  Q
    |||||||| |||| ||||| ||||||||||||  ||||||||||||||||||||||  ||||||||||| |||||||||||||||||| | |||| | |     
T  44145852 caaattatcatttcttaaaatcaaagcctccatgttagaaagggcacccattgagattggaatctttcctgacaacttgttattgctctgatcaacaaac 44145753  T
Q  102 tgtaatgaggataaattattccaacaatcag 132  Q
      ||| | || ||||||||||||||||||||    
T  44145752 cttaacgcggttaaattattccaacaatcag 44145722  T

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Target: chr1; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 41 - 160
Target Start/End: Original strand, 11543730 - 11543849
Alignment:
Q  41 aagggcacccattgagaagggaatctttccagacaacttgttattgctcaggtcaatatattgtaatgaggataaattattccaacaatcagacaactca 140  Q
    |||||||||||| || || || |||||||| |||||||||||||| || ||||||| ||| | ||  |||| |||||||||||||||||||| || ||||    
T  11543730 aagggcacccatcgacaatgggatctttcccgacaacttgttattactgaggtcaacatagtatagcgaggttaaattattccaacaatcaggcagctca 11543829  T
Q  141 ccctttaattcattgtttga 160  Q
    |||||||||| |||||||||    
T  11543830 ccctttaattgattgtttga 11543849  T

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Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 160
Target Start/End: Original strand, 44794836 - 44794889
Alignment:
Q  107 tgaggataaattattccaacaatcagacaactcaccctttaattcattgtttga 160  Q
    ||||| || ||||||||||||||||| |||||| ||||||||||||||||||||    
T  44794836 tgaggttagattattccaacaatcaggcaactctccctttaattcattgtttga 44794889  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 44794789 - 44794841
Alignment:
Q  41 aagggcacccattgagaagggaatctttccagacaacttgttattgctcaggt 93  Q
    ||||| |||||||||||| ||||||||||| | |||||| |||||||| ||||    
T  44794789 aagggaacccattgagaatggaatctttcctgtcaacttattattgctgaggt 44794841  T

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Target: scaffold0017 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 7 - 251
Target Start/End: Complemental strand, 181481 - 181237
Alignment:
Q  7 tattatttgttaaactcaaagcctccaaattagaaagggcacccattgagaagggaatctttccagacaacttgttattgctcaggtcaatatattgtaa 106  Q
    |||||||| |||||  |||| |||||| ||| | ||||| |||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||    
T  181481 tattatttcttaaaaccaaaacctccatatttgtaagggtacccattgagaagggaatctttccggacaacttgttattgctcagatcaacatattgtaa 181382  T
Q  107 tgaggataaattattccaacaatcagacaactcaccctttaattcattgtttgacaagtccaataatatcaaagtgtcggccttaattttgttgcataga 206  Q
    ||||| ||||| |||||||||||||| |||||||||||||||||||||| |||| || ||||| | || |||| ||   | |||| ||||| |||||       
T  181381 tgaggttaaatcattccaacaatcaggcaactcaccctttaattcattgcttgataaatccaaaattaccaaattgcttggcttacttttgctgcatgtg 181282  T
Q  207 aagggaactaagtctgaaaatttattttcagaaagttgtaatgct 251  Q
    |||| | |||| |||||||||||||| || |||||||||| ||||    
T  181281 aaggaagctaaatctgaaaatttattatcggaaagttgtactgct 181237  T

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Target: scaffold0017; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 2 - 232
Target Start/End: Complemental strand, 170399 - 170169
Alignment:
Q  2 caaattattatttgttaaactcaaagcctccaaattagaaagggcacccattgagaagggaatctttccagacaacttgttattgctcaggtcaatatat 101  Q
    |||| |||||||| |||||  |||||||||||  |||  ||||||||||||||||| |||||| |||||  | || ||||||||||| ||||||| | ||    
T  170399 caaactattatttcttaaaaccaaagcctccatgttaacaagggcacccattgagatgggaatttttccccataatttgttattgctgaggtcaacaaat 170300  T
Q  102 tgtaatgaggataaattattccaacaatcagacaactcaccctttaattcattgtttgacaagtccaataatatcaaagtgtcggccttaattttgttgc 201  Q
    | |||||||| || ||||||||||||||||| |||||| |||||||||||||||||||  |  ||||| | |  |||| |||  | |||| || | ||||    
T  170299 tttaatgaggttagattattccaacaatcaggcaactcgccctttaattcattgtttgctatttccaaaacttccaaaatgttaggcttatttctattgc 170200  T
Q  202 atagaaagggaactaagtctgaaaatttatt 232  Q
    ||||||||| |||||| ||||||||||||||    
T  170199 atagaaaggaaactaaatctgaaaatttatt 170169  T

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Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 9 - 232
Target Start/End: Original strand, 29506789 - 29507012
Alignment:
Q  9 ttatttgttaaactcaaagcctccaaattagaaagggcacccattgagaagggaatctttccagacaacttgttattgctcaggtcaatatattgtaatg 108  Q
    |||||| ||||| |||||||||||| ||||  ||| |||||||||||||| |||||||| || ||||| |||||||||||||| |||| | | |||||||    
T  29506789 ttatttcttaaaatcaaagcctccatattaacaagagcacccattgagaatggaatcttacccgacaagttgttattgctcagttcaacaaactgtaatg 29506888  T
Q  109 aggataaattattccaacaatcagacaactcaccctttaattcattgtttgacaagtccaataatatcaaagtgtcggccttaattttgttgcatagaaa 208  Q
    ||| || ||||||||||||||||| ||||||||||||||||| |||||||||||| ||||| | |  || | |||  | |||| | |||||||||| |||    
T  29506889 aggttagattattccaacaatcaggcaactcaccctttaattgattgtttgacaaatccaacattgccagattgttaggcttactattgttgcatacaaa 29506988  T
Q  209 gggaactaagtctgaaaatttatt 232  Q
    || | |||| ||||||||||||||    
T  29506989 ggaagctaaatctgaaaatttatt 29507012  T

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Target: scaffold0061 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 2 - 232
Target Start/End: Original strand, 28393 - 28623
Alignment:
Q  2 caaattattatttgttaaactcaaagcctccaaattagaaagggcacccattgagaagggaatctttccagacaacttgttattgctcaggtcaatatat 101  Q
    |||| |||||||| |||||  |||||||||||  |||  ||||||||||||||||| |||||| |||||  | || ||||||||||| ||||||| | ||    
T  28393 caaactattatttcttaaaaccaaagcctccatgttaacaagggcacccattgagatgggaatttttccccataatttgttattgctgaggtcaacaaat 28492  T
Q  102 tgtaatgaggataaattattccaacaatcagacaactcaccctttaattcattgtttgacaagtccaataatatcaaagtgtcggccttaattttgttgc 201  Q
    | |||||||| || ||||||||||||||||| |||||| |||||||||||||||||||  |  ||||| | |  |||| |||  | |||| || | ||||    
T  28493 tttaatgaggttagattattccaacaatcaggcaactcgccctttaattcattgtttgctatttccaaaacttccaaaatgttaggcttatttctattgc 28592  T
Q  202 atagaaagggaactaagtctgaaaatttatt 232  Q
    ||||||||| |||||| ||||||||||||||    
T  28593 atagaaaggaaactaaatctgaaaatttatt 28623  T

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Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 47 - 160
Target Start/End: Complemental strand, 8343497 - 8343384
Alignment:
Q  47 acccattgagaagggaatctttccagacaacttgttattgctcaggtcaatatattgtaatgaggataaattattccaacaatcagacaactcacccttt 146  Q
    |||||||||||| ||||||||||| |||||||||||||| || ||||||| ||| | |||||||| |||||||||||||||||| | |||||||||||||    
T  8343497 acccattgagaatggaatctttcccgacaacttgttattactaaggtcaagatagtataatgaggttaaattattccaacaatcgggcaactcacccttt 8343398  T
Q  147 aattcattgtttga 160  Q
    ||||||||||||||    
T  8343397 aattcattgtttga 8343384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 2 - 169
Target Start/End: Complemental strand, 26729135 - 26728968
Alignment:
Q  2 caaattattatttgttaaactcaaagcctccaaattagaaagggcacccattgagaagggaatctttccagacaacttgttattgctcaggtcaatatat 101  Q
    |||| |||||||| ||||| |||||||||| |  |||  ||| |||||||||||| | ||||| |||||  |||||||||||||||||| ||||| |||     
T  26729135 caaactattatttcttaaaatcaaagcctctatgttaacaagagcacccattgaggatggaatatttccccacaacttgttattgctcaagtcaacatag 26729036  T
Q  102 tgtaatgaggataaattattccaacaatcagacaactcaccctttaattcattgtttgacaagtccaa 169  Q
    |||||||| | |||||||||||||||||||| ||||||  ||||||||| ||||||||| || |||||    
T  26729035 tgtaatgatgctaaattattccaacaatcaggcaactcgtcctttaattgattgtttgataaatccaa 26728968  T

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