View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4540_low_1 (Length: 729)
Name: NF4540_low_1
Description: NF4540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4540_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 616; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 616; E-Value: 0
Query Start/End: Original strand, 3 - 712
Target Start/End: Original strand, 32243585 - 32244294
Alignment:
| Q |
3 |
tgggtagattatactagtggctacaaagcagaagctcgtggtttcttatgttggaaatcatgatggcgaggtgcatgacacattggaaattatggcatct |
102 |
Q |
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|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32243585 |
tgggtacattagactagtggctacaaagcagaagctcgtggtttcttatgttggaaatcatgatggcgaggtgcatgacacattggaaattatggcatct |
32243684 |
T |
|
| Q |
103 |
ggagaagttttcaatggtaatattaatgtcgatattggtagtgataaacctaaaggtttgattgaagaagctacattatctcggtatgtccaaggaggaa |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32243685 |
ggagaagttttcaatggtaatattaatgtcgatattggtagtgctaaacctaaaggtttgattgaagaagctacattatcccggtatgtccaaggaggaa |
32243784 |
T |
|
| Q |
203 |
gtgtactggtgcttggggcctttatgggttacattctctgttgggttatacatgcaaggaagaagcctgagtccaagagtggttgtaccatcgcgaagac |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32243785 |
gtgtactggtgcttggggcctttatgggttacattctctgttgggttatacatgcaaggaagaagcctgagtccaagagtggttgtactatcgcgaagac |
32243884 |
T |
|
| Q |
303 |
tgagaaacatgattagttactactctttacaacnnnnnnnnataggaggtatagaattaagtatcactcgtatatatttgtttgatcaaaaccctgatat |
402 |
Q |
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|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
32243885 |
tgagaaacatgattagttactactctttactaactttttttataggaggtatagaattaagtatcactc----atatttgtttgatcaaaactctgatat |
32243980 |
T |
|
| Q |
403 |
acttggagactttatgtttgaacatatgcaagttttctccctaaaagcttgtcgtttaa----ggcatcccttgtagtgacttgtgttgttgtataatat |
498 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32243981 |
acttggagactttatgtttgaacatatgcaagttttctccctaaaagcttgtcgtttaattaaggcatcccttgtagtgacttgtgttgttgtataatat |
32244080 |
T |
|
| Q |
499 |
tcaagttttctcactatgattttgtatgggttatgttccttactgatagaataagagaagtctcgtccctattccctaatttcttgaattattagttttg |
598 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32244081 |
tcaagttttctcactatgattttgtatgggttatgttccttactgatagaataagagaagtctcgtccctattccctaatttcttgaattattagttttg |
32244180 |
T |
|
| Q |
599 |
aagcaaattgagatcgaaaaatggtaaggtattccccaatgttaaagaaaaacatagatttctcacaattctaacttctcaaatgttattttaaagagta |
698 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32244181 |
aagcaaattgagatcgaaaaatggtaaggtattccccaatgttaaacaaaaacatagatttctcacaattctaacttctgaaatgttattttaaagagta |
32244280 |
T |
|
| Q |
699 |
aataattactttgt |
712 |
Q |
| |
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|||||||||||||| |
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| T |
32244281 |
aataattactttgt |
32244294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 20 - 321
Target Start/End: Original strand, 32248683 - 32249003
Alignment:
| Q |
20 |
tggctacaaagcagaagctcgtggtttcttatgttggaaatcatgatggcgaggtgcatgacacattggaaattatggcatctggagaagttttcaatgg |
119 |
Q |
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|||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||| ||| ||||||||||||| | | ||| |
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| T |
32248683 |
tggctacaaagcagaatctcgtgatttcttatgttggtaatcatgatggcgaggtgcatgacacattggagattctggaatctggagaagttgttagtgg |
32248782 |
T |
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| Q |
120 |
---------------taatattaatgtcgatattggtagtgataaacctaaaggtttgattgaagaagctacattatctcggtatgtccaaggaggaagt |
204 |
Q |
| |
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|||| |||||| || ||||||||||| ||||||| ||||| |||| ||||| | || || || |||||||||| ||||||||| |
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| T |
32248783 |
tggtggtggtaacgataatgttaatggcggtattggtagtgctaaacctgaaggtcagattaaagaatccacgttgtcgtggtatgtccagggaggaagt |
32248882 |
T |
|
| Q |
205 |
gtactggtgcttggggcctttatgggttacattctctgttgggttatacatgcaaggaaga---agcctgagtccaagagtggttgtaccatcgcgaaga |
301 |
Q |
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||||| |||||||||||||||||||| |||||||| ||| ||| |||||| ||||||| |||| ||||||| |||||||| || | || ||||| |
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| T |
32248883 |
gtactagtgcttggggcctttatgggctacattcttggtttcgtttcacatgctaggaagaagcagcccgagtccaggagtggttttagccccgtgaaga |
32248982 |
T |
|
| Q |
302 |
ctga-gaaacatgattagtta |
321 |
Q |
| |
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|||| |||||||||||||||| |
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| T |
32248983 |
ctgaggaaacatgattagtta |
32249003 |
T |
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Back To:
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