View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4540_low_10 (Length: 295)
Name: NF4540_low_10
Description: NF4540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4540_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 277
Target Start/End: Complemental strand, 51899369 - 51899108
Alignment:
| Q |
18 |
cataggggaaaaagtctaacactaaagttattaatatcagactggcctcattaaaattctaaaacagtgaaacacatggaaactgattacagatccatca |
117 |
Q |
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| T |
51899369 |
cataggggaaaaagtctaacactaaagttattaatatcagactggcctcatgaaaattctaaaacagtgaaaaacatggaaactgattacagatccatca |
51899270 |
T |
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| Q |
118 |
tgaatcaatcaaaacataaagagaaagagacctttttcaatttcaacattagtcacagtcagag--nnnnnnntaacatttctatgtttcagttttcatt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
51899269 |
tgaatcaatcaaaacataaagagaaagagacctttttcaatttcaacattagtcacagtcagagaaaaaaaaataacatttctatgtttcagttttcatt |
51899170 |
T |
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| Q |
216 |
tcatgcttagcattacctccaactgcaaaaagagtctaaactaaagaacttaaccagatatt |
277 |
Q |
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||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
51899169 |
tcatgcttagctttacctccaactacaaaaagagtctaaactaaagaacttaaccagatatt |
51899108 |
T |
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