View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4540_low_13 (Length: 213)
Name: NF4540_low_13
Description: NF4540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4540_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 26075658 - 26075468
Alignment:
| Q |
17 |
aaattgaaaccggttattattcatgtgaattaccaccgtgataagcttccgcgaatgaaagcagttgttgaatattatgttaatgggaaccaagatgctc |
116 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
26075658 |
aaattgaaaccggttattattcacttgaattaccaccgtgataagcttcggcgaatgaaagcagttgttgaatattatgttaatgggaactaagatgctc |
26075559 |
T |
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| Q |
117 |
tcaaaccttttcccggtggc-----tcgataaccttgtttctatgtcttagttgttgttcaaaaacataaccaacacgtatacctatgctt |
202 |
Q |
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| T |
26075558 |
tgaaaccttttcccgatggcacacatcgataaccttgtttctatgtcttagttgttgttcaaaaacataaccaacacgtatacttatgctt |
26075468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 26084252 - 26084062
Alignment:
| Q |
17 |
aaattgaaaccggttattattcatgtgaattaccaccgtgataagcttccgcgaatgaaagcagttgttgaatattatgttaatgggaaccaagatgctc |
116 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
26084252 |
aaattgaaaccggttattattcacgtgaattaccaccgtgataagcttccgcgaatgaaagcagttgttgaatactatgttaatgggaaccaagatgctc |
26084153 |
T |
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| Q |
117 |
tcaaaccttttcccggtgg-----ctcgataaccttgtttctatgtcttagttgttgttcaaaaacataaccaacacgtatacctatgctt |
202 |
Q |
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| T |
26084152 |
tcaaaccttttcccgatggcacacctcgataaccttgtttctatgtcttagttgttgttctaaaacttaaccagcatgtatacttatgctt |
26084062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 26119814 - 26119627
Alignment:
| Q |
17 |
aaattgaaaccggttattattcatgtgaattaccaccgtgataagcttccgcgaatgaaagcagttgttgaatattatgttaatgggaaccaagatgctc |
116 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26119814 |
aaattgaaaccggttattattcacttgaattaccaccgtgataagcttacgcgaatgaaagcagttgttgaatattatgttaatgggaaccaagatgctc |
26119715 |
T |
|
| Q |
117 |
tcaaaccttttcccggtgg-----ctcgataaccttgtttctatgtcttagttgttgttcaaaaacataaccaacacgtatacctatgctt |
202 |
Q |
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||||||||||||||| ||| |||||||||||||| ||||||| || |||||||||||||| |||| | ||| ||||| ||||||| |
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| T |
26119714 |
tcaaaccttttcccgatggcacacctcgataaccttgt---tatgtctaagctgttgttcaaaaacttaacgagcacctatacttatgctt |
26119627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 17 - 177
Target Start/End: Complemental strand, 26096527 - 26096362
Alignment:
| Q |
17 |
aaattgaaaccggttattattcatgtgaattaccaccgtgataagcttccgcgaatgaaagcagttgttgaatattatgttaatgggaaccaagatgctc |
116 |
Q |
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|||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
26096527 |
aaattgaaaccggtaattattcacttgaattaccaccgtgataagcttcggcgaatgaaagcaattgttgaatattatgttaatgggaaccaagatgctc |
26096428 |
T |
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| Q |
117 |
tcaaaccttttcccggtgg-----ctcgataaccttgtttctatgtcttagttgttgttcaaaaac |
177 |
Q |
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||||||||||||||| ||| |||||||||||||||| | ||||| ||||||||||||||||| |
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| T |
26096427 |
tcaaaccttttcccgatggcacacctcgataaccttgtttttgtgtctaagttgttgttcaaaaac |
26096362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 17 - 162
Target Start/End: Complemental strand, 26064527 - 26064377
Alignment:
| Q |
17 |
aaattgaaaccggttattattcatgtgaattaccaccgtgataagcttccgcgaatgaaagcagttgttgaatattatgttaatgggaaccaagatgctc |
116 |
Q |
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|||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26064527 |
aaattgaaaccggtaattattcacgtgaattaccaccctgataagcttccgcgaatgaaagcagttgttgaatattatgttaatgggaaccaagatgctc |
26064428 |
T |
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| Q |
117 |
tcaaaccttttcccggtggctc-----gataaccttgtttctatgtcttag |
162 |
Q |
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|||||||||| || | |||||| | ||||||||||||| |||||||| |
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| T |
26064427 |
tcaaacctttccctgatggctcaaagtggtaaccttgtttctgtgtcttag |
26064377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 26126471 - 26126281
Alignment:
| Q |
17 |
aaattgaaaccggttattattcatgtgaattaccaccgtgataagcttccgcgaatgaaagcagttgttgaatattatgttaatgggaaccaagatgctc |
116 |
Q |
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|
|||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
26126471 |
aaattgaaaccggtaattattcacttgaattaccaccctgataagcttccgcgaatgaaagcagttgttgaatactatgttaatgggaaccaagatgctc |
26126372 |
T |
|
| Q |
117 |
tcaaaccttttcccggtgg-----ctcgataaccttgtttctatgtcttagttgttgttcaaaaacataaccaacacgtatacctatgctt |
202 |
Q |
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|||||||||| | | ||| || ||||||||||||||| ||||||||||||| |||||| || |||| | ||| ||||| ||||||| |
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| T |
26126371 |
tcaaacctttctcggatggcacaccttgataaccttgtttctgtgtcttagttgttcttcaaatacttaacgagcacctatacttatgctt |
26126281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 26035879 - 26035770
Alignment:
| Q |
17 |
aaattgaaaccggttattattcatgtgaattaccaccgtgataagcttccgcgaatgaaagcagttgttgaatattatgttaatgggaaccaagatgctc |
116 |
Q |
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|
||||||||||| || ||| |||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||| |
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| T |
26035879 |
aaattgaaaccagtaattgttcacgtgaattaccaccctgataagcttccgcgaatgaaagcagttgtcgaatattatgtcaatgggaaacaagatgctc |
26035780 |
T |
|
| Q |
117 |
tcaaaccttt |
126 |
Q |
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|||||||||| |
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| T |
26035779 |
tcaaaccttt |
26035770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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