View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4540_low_2 (Length: 613)
Name: NF4540_low_2
Description: NF4540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4540_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 205 - 595
Target Start/End: Original strand, 16293872 - 16294262
Alignment:
| Q |
205 |
tatatcatttatgaaaaaagtaagttgaataagaaatttgattgttaacatcaattttataatcaaacgtttcaatttataactttaaatgaaatcaaaa |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||| |
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| T |
16293872 |
tatatcatttatgaaaaaagtaagttgaataagaaattcgattgttaacatcaattttataatcaaacgtttcgatttataacttcaaatgaaattaaaa |
16293971 |
T |
|
| Q |
305 |
ttttagtgacaaaatcaatcttgagaacaactaaacatgttaaaatcaattctacacttttataatcaatttgatccctttaaaaatgaaatctaacata |
404 |
Q |
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|||||| |||||||||||||||| || |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
16293972 |
ttttagagacaaaatcaatcttgtgagcaaccaaacatgttaaaatcaattctacacttctataatcaatttgatccctttaagaatgaaatctaacata |
16294071 |
T |
|
| Q |
405 |
atttactcaaacatttatccagattaaatttgagaagaaagcacataaagaaagaaaaccaacgaccataagtgaaatttgaattctgtctcattaacca |
504 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16294072 |
atttactcaaacatttatcaagattaaatttgagaagaaagcacataaagaaagaaaaccaacgaccataagtgaaatttgaattctgtctcattaacca |
16294171 |
T |
|
| Q |
505 |
attaacaaagcttgagaaatttacacaatgaagaaaacaaaacgaaaactcattcacttgaaacaaatctaaaaatctgattcacatatcc |
595 |
Q |
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| T |
16294172 |
attaacaaagcttgagaaatttacacaattaagaaaacaaaacaaaaactcattcacttgaaacaaatctaaaaatctgattcacatatcc |
16294262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 10 - 143
Target Start/End: Original strand, 16293663 - 16293796
Alignment:
| Q |
10 |
acatcatcatcaaacatgtgttgacggatgaacatacttatgtaatatttgacaaagtcgaagactatttaaaaaatgaacagagttagagatattttaa |
109 |
Q |
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| T |
16293663 |
acatcatcatcaaacatgtgttgacggatgaacatacttgcgtaatgtttgacaaagtcgaagactatttaaaaaatgaagagagttagagatattttaa |
16293762 |
T |
|
| Q |
110 |
gagtgtctcgatgaaccacatgttgacttagtat |
143 |
Q |
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| T |
16293763 |
gagtgtctcgaagaaccacatgtcgacttagtat |
16293796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 376
Target Start/End: Complemental strand, 29922867 - 29922818
Alignment:
| Q |
327 |
gagaacaactaaacatgttaaaatcaattctacacttttataatcaattt |
376 |
Q |
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| T |
29922867 |
gagaacaaccaaacatgtcaaaatcaattctacactactagaatcaattt |
29922818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 332 - 376
Target Start/End: Original strand, 3043121 - 3043165
Alignment:
| Q |
332 |
caactaaacatgttaaaatcaattctacacttttataatcaattt |
376 |
Q |
| |
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||||||||||||| |||||||||||||||| | || ||||||||| |
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| T |
3043121 |
caactaaacatgtcaaaatcaattctacacctctagaatcaattt |
3043165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 332 - 376
Target Start/End: Complemental strand, 39097232 - 39097188
Alignment:
| Q |
332 |
caactaaacatgttaaaatcaattctacacttttataatcaattt |
376 |
Q |
| |
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|||| |||||||| |||||||||||||||| | |||||||||||| |
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|
| T |
39097232 |
caaccaaacatgtcaaaatcaattctacacctctataatcaattt |
39097188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 325 - 361
Target Start/End: Complemental strand, 30879609 - 30879573
Alignment:
| Q |
325 |
ttgagaacaactaaacatgttaaaatcaattctacac |
361 |
Q |
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| T |
30879609 |
ttgagaacaactatacatgttaaaatcaattctacac |
30879573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 396
Target Start/End: Original strand, 10203559 - 10203620
Alignment:
| Q |
336 |
taaacatgttaaaatcaattctacacttttataatcaatttgatcc-ctttaaaaatgaaat |
396 |
Q |
| |
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||||||| || ||||||| |||||||||||| ||||||||| | || ||||||||||||||| |
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| T |
10203559 |
taaacatatttaaatcaactctacacttttaaaatcaattttaaccactttaaaaatgaaat |
10203620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 404
Target Start/End: Complemental strand, 4778517 - 4778448
Alignment:
| Q |
336 |
taaacatgttaaaatcaattctacacttttataatcaa-tttgatccctttaaaaatgaaatctaacata |
404 |
Q |
| |
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|||||||||||| ||||||||||||||| || ||| || ||||| |||| |||||||||||| |||||| |
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| T |
4778517 |
taaacatgttaacatcaattctacacttctagaattaattttgactccttcaaaaatgaaatcaaacata |
4778448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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