View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4540_low_3 (Length: 586)
Name: NF4540_low_3
Description: NF4540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4540_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 21 - 424
Target Start/End: Original strand, 18986855 - 18987268
Alignment:
| Q |
21 |
atggctacagagttgttggatctaagcgcaagatccaactgcact----------tacatcaaacagctcaggtgcagccattgtataagatttgattgg |
110 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18986855 |
atggctacagagctgttggatctaagtgcaagatccaactgcactctcttgcacttacatcaaacagctcaggtgcagccattgtataagatttgattgg |
18986954 |
T |
|
| Q |
111 |
aaaatattggtatattattactaagaccagaaca---gtatattcaattccacaccaaacaaaatggatcaccaatatcaaatgaatacccaaatacaca |
207 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18986955 |
aaaatattagtatattattactaagaccagaacaacagtaaattcaattccacaccaaacaaaatggatcaccaatatcaaatgaatacccaaatacaca |
18987054 |
T |
|
| Q |
208 |
atgagtgaaggaaagccataacattcatgtagaaatacattgctgacgtggacaacattaggatttatcatagacattgccattaccacttttgaccaac |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||| |
|
|
| T |
18987055 |
atgagtgaaggaaagccataacattcatgtagaaatacattgctgacgtggacaacattaggatttatcttagacattgccactaccacttttcaccaac |
18987154 |
T |
|
| Q |
308 |
caacaaacaagaaataacacttttatcaccaaaacataatcataggcaagaaatcaacataaaataaagaatagaaataaaagggttgttatcaaaagca |
407 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| || || |||||| |||| ||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
18987155 |
caacaaacaggaaataacacttttatcaccaaaacataatcttaagctagaaat---catataataaagaataaaaatgaaagggttgttatcaaaagca |
18987251 |
T |
|
| Q |
408 |
ataaaaggtggtgtacc |
424 |
Q |
| |
|
||||||| ||||||||| |
|
|
| T |
18987252 |
ataaaagatggtgtacc |
18987268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 488 - 575
Target Start/End: Original strand, 18987332 - 18987419
Alignment:
| Q |
488 |
tgtggcggttacgaagaaaaatggtgggtttggacggaacatgcaaagtgggtttggttggtactgaactaatgagtgcatgatgatg |
575 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18987332 |
tgtggtggtaacgaagaaaaatggtgggtttggaaggaacatgcgaagtgggtttggttggtactgaactaatgagtgcatgatgatg |
18987419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University