View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4540_low_4 (Length: 483)
Name: NF4540_low_4
Description: NF4540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4540_low_4 |
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| [»] scaffold1583 (1 HSPs) |
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Alignment Details
Target: scaffold1583 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: scaffold1583
Description:
Target: scaffold1583; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 85 - 478
Target Start/End: Original strand, 749 - 1142
Alignment:
| Q |
85 |
aaacaaaagaccaccatctccaaaatctccaccactctcaccgccgccattaaagacatctctgtatcctcttctaactcaacaacaaccaaacacttca |
184 |
Q |
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|||||||| ||||||||||||||| || |||||||||||||||||||||| | | ||||||||| |||||||||||||||||| |||||||||||| || |
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| T |
749 |
aaacaaaacaccaccatctccaaactcgccaccactctcaccgccgccatcagattcatctctgtctcctcttctaactcaacaccaaccaaacactcca |
848 |
T |
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| Q |
185 |
gaagatgaaccaccactaaacatcatgcctctagacatgatttctaaacccttgtttcaagcttctccaccagtcatcactcaaaccgctcctcatctca |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
849 |
gaagatgaaccaccactaaacatcatgcctctagacatgattagtaaacccttgtttcaagcttctccaccaatcatcactcaaaccgctcctcatctca |
948 |
T |
|
| Q |
285 |
agaatttctctcaattgaaaccaaagaagacaaaatcttctcaattgattggtgttcgaagatcaaataggattagggctggaattggaatcggaaaaac |
384 |
Q |
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| T |
949 |
aaaatttctctcaatcaaaaccaaagaagacaaaatcttctcaatcaattggtgttcgtagatcaaacagaattagggctggaataggaatgagaaaaac |
1048 |
T |
|
| Q |
385 |
tcaaagtgtccatactacagcacacaaaattcctaattctgaagatgaagcaaaccacagagatgctgctccaaaataaccttctgatgatgtc |
478 |
Q |
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| T |
1049 |
tcaaagtgtagatactacagtacatgaaattcctgattctgaagatgaaacaaaccacagagaagctgttccaacagaatcttctgttgatgtc |
1142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 85 - 478
Target Start/End: Complemental strand, 14275938 - 14275545
Alignment:
| Q |
85 |
aaacaaaagaccaccatctccaaaatctccaccactctcaccgccgccattaaagacatctctgtatcctcttctaactcaacaacaaccaaacacttca |
184 |
Q |
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|||||||| ||| ||||||||||| ||||||||||||||||||||||||| | | ||||||||| |||||||||||||||||| |||||||||||| || |
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| T |
14275938 |
aaacaaaacaccgccatctccaaactctccaccactctcaccgccgccatcagattcatctctgtctcctcttctaactcaacaccaaccaaacactcca |
14275839 |
T |
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| Q |
185 |
gaagatgaaccaccactaaacatcatgcctctagacatgatttctaaacccttgtttcaagcttctccaccagtcatcactcaaaccgctcctcatctca |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
14275838 |
gaagatgaaccaccactaaacatcatgcctctagacatgattagtaaacccttgtttcaagcttctccaccaatcatcactcaaaccgctcctcatctca |
14275739 |
T |
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| Q |
285 |
agaatttctctcaattgaaaccaaagaagacaaaatcttctcaattgattggtgttcgaagatcaaataggattagggctggaattggaatcggaaaaac |
384 |
Q |
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| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||| || ||||| |||| ||| ||| | ||||||| |
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| T |
14275738 |
aaaatttctctcaatcgaaaccaaagaagacaaaatcttctcaatcaattggtgttcgtagatcaaacagaattagagctgaaataggattgagaaaaac |
14275639 |
T |
|
| Q |
385 |
tcaaagtgtccatactacagcacacaaaattcctaattctgaagatgaagcaaaccacagagatgctgctccaaaataaccttctgatgatgtc |
478 |
Q |
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|||| |||| ||||||||| ||| |||||| | |||||||||||||| | ||||||||||| | || ||||| | ||||||||| ||||||| |
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| T |
14275638 |
tcaatgtgtagatactacagtacatgaaattcatgattctgaagatgaaaccaaccacagagaagttgttccaacagaaccttctgttgatgtc |
14275545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 85 - 478
Target Start/End: Original strand, 12921706 - 12922110
Alignment:
| Q |
85 |
aaacaaaagaccaccatctccaaaatctccaccactctcaccgccgccattaaagacatctctgtatcctcttctaactcaacaacaaccaaacacttca |
184 |
Q |
| |
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|||||||| |||||||| | |||| ||||||||||||||||| ||||||| | |||||||||||| |||||||||||||||||||||||||||| || || |
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| T |
12921706 |
aaacaaaacaccaccattttcaaactctccaccactctcaccaccgccatcagagacatctctgtctcctcttctaactcaacaacaaccaaactctcca |
12921805 |
T |
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| Q |
185 |
gaagatgaaccaccactaaacatcatgcctctagacatgatttctaaacccttgtttcaagcttctcca-----------ccagtcatcactcaaaccgc |
273 |
Q |
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||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| | | | |||||||||||||||| |
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| T |
12921806 |
gaagatgaaccaccattaaacatcatgcctctagacatgattaataaacccttgtttcaagcttctctaaataatttggccgaatcatcactcaaaccgc |
12921905 |
T |
|
| Q |
274 |
tcctcatctcaagaatttctctcaattgaaaccaaagaagacaaaatcttctcaattgattggtgttcgaagatcaaataggattagggctggaattgga |
373 |
Q |
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|||||||||||| | |||||||||| ||||||||| ||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||| ||| |
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| T |
12921906 |
tcctcatctcaaaaccttctctcaatcgaaaccaaataagacaaaatcttctcaatcgattggtgttcgtagatcaaacaggattagggctggaatagga |
12922005 |
T |
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| Q |
374 |
atcggaaaaactcaaagtgtccatactacagcacacaaaattcctaattctgaagatgaagcaaaccacagagatgctgctccaaaataaccttctgatg |
473 |
Q |
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||| |||||||||||||||| | ||||||| ||| |||||||| |||||||||||||||||||||||||||| |||| ||||| | ||||||||| || |
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| T |
12922006 |
atcagaaaaactcaaagtgtagacactacagtacatgaaattcctgattctgaagatgaagcaaaccacagagaagctgttccaacagaaccttctgttg |
12922105 |
T |
|
| Q |
474 |
atgtc |
478 |
Q |
| |
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||||| |
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| T |
12922106 |
atgtc |
12922110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 86 - 479
Target Start/End: Complemental strand, 14638659 - 14638266
Alignment:
| Q |
86 |
aacaaaagaccaccatctccaaaatctccaccactctcaccgccgccattaaagacatctctgtatcctcttctaactcaacaacaaccaaacacttcag |
185 |
Q |
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||||||| ||||||||||||||| || ||||||||||||||||| |||| | | ||||||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
14638659 |
aacaaaacaccaccatctccaaactcgccaccactctcaccgccaccatcagattcatctctgtctcctcttctaactcaacaacaaccaaacactccag |
14638560 |
T |
|
| Q |
186 |
aagatgaaccaccactaaacatcatgcctctagacatgatttctaaacccttgtttcaagcttctccaccagtcatcactcaaaccgctcctcatctcaa |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || | ||||||||||||||||||||||| || |
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| T |
14638559 |
aagatgaaccaccactaaacatcatgcctctagacatgattagtaaacccttgtttcaagcttctccatcaataatcactcaaaccgctcctcatctaaa |
14638460 |
T |
|
| Q |
286 |
gaatttctctcaattgaaaccaaagaagacaaaatcttctcaattgattggtgttcgaagatcaaataggattagggctggaattggaatcggaaaaact |
385 |
Q |
| |
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| | ||||||| |||||| |||||||||||||||||||||| ||||||| |||| |||||||| ||||||||||||||||| ||||| | |||||| |
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| T |
14638459 |
agctctttctcaatcgaaacccaagaagacaaaatcttctcaatcgattggtattcgtagatcaaacaggattagggctggaataggaataaggaaaact |
14638360 |
T |
|
| Q |
386 |
caaagtgtccatactacagcacacaaaattcctaattctgaagatgaagcaaaccacagagatgctgctccaaaataaccttctgatgatgtcc |
479 |
Q |
| |
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|||||||| ||||||||| ||| |||||||| |||||||||||||| | | ||||||||| |||| ||||| | ||||||||| |||||||| |
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| T |
14638359 |
caaagtgtagatactacagtacatgaaattcctgattctgaagatgaaactacccacagagaagctgttccaacagaaccttctgttgatgtcc |
14638266 |
T |
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