View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4540_low_5 (Length: 451)
Name: NF4540_low_5
Description: NF4540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4540_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 20 - 447
Target Start/End: Complemental strand, 40945906 - 40945476
Alignment:
| Q |
20 |
catattaatttgttaaaggcacgaataaactatatgattattgatacacttgtataaaatacaa---ataaagcattttataaaataacnnnnnnngtta |
116 |
Q |
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|||||||||||||||||||| ||| || ||| |||||| |||||||||||||||||||||||| |||||||||||| || |||| |||| |
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| T |
40945906 |
catattaatttgttaaaggcttgaaaaacctacatgatttttgatacacttgtataaaatacaacaaataaagcattttcataattaaccaacaaagtta |
40945807 |
T |
|
| Q |
117 |
acaaataggaagaggagcaccgttccactctcccaagcattcaagaagaggatcaatgatttttccctgacacatagctgtgaataatttgtcacacact |
216 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40945806 |
acaaattggaagaggagcaccgttccactctcccaagcattcaagaagaggatcaatgatttttccctgacacatagctgtgaataatttgtcacacact |
40945707 |
T |
|
| Q |
217 |
tcaccgggtgaaatgacattttctccagttagtaaaccagttcccaactcctctctaacaaacttgtaaagtggataagatctgcatccattgatcttgt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40945706 |
tcaccgggtgaaatgacattttctccagttagtaaaccagttcccaactcctctctaacaaacttgtaaagtggataagatctgcatccattgatcttgt |
40945607 |
T |
|
| Q |
317 |
ttggaattgttgggtttccactctcatatgcggtccttgcactttcaacctcttttggcaagaggctcttcaactcttcctcaaaagttgcaatcttttg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40945606 |
ttggaattgttgggtttccactctcatatgcggtccttgcactttcaacctcttttggcaagaggctcttcaactcttcctcaaaagttgcaatcttttg |
40945507 |
T |
|
| Q |
417 |
aaagattgaagtgttcaaattcttctcactc |
447 |
Q |
| |
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| T |
40945506 |
aaagattgaagtgttcaaattcttctcactc |
40945476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 32 - 447
Target Start/End: Complemental strand, 40959854 - 40959441
Alignment:
| Q |
32 |
ttaaaggcacgaataaactatatgattattgatacacttgtataaaatacaaataaagcattttataaaataacnnnnnnngttaacaaataggaagagg |
131 |
Q |
| |
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||||||||| ||| || ||| |||||||||| |||||||||||| | |||||||||| |||||| || |||| |||||||||| |||||||| |
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| T |
40959854 |
ttaaaggcatgaaaaaccta-atgattattgttacacttgtataga-tacaaataaaacattttcagaattaaccaacaaagttaacaaattggaagagg |
40959757 |
T |
|
| Q |
132 |
agcaccgttccactctcccaagcattcaagaagaggatcaatgatttttccctgacacatagctgtgaataatttgtcacacacttcaccgggtgaaatg |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40959756 |
agcaccgttccactctcccaagcattcaagaagaggatcaatgatttttccctgacacatagctgtgaataatttgtcacacacttcaccgggtgaaatg |
40959657 |
T |
|
| Q |
232 |
acattttctccagttagtaaaccagttcccaactcctctctaacaaacttgtaaagtggataagatctgcatccattgatcttgtttggaattgttgggt |
331 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40959656 |
acattttctccagttagtaaaccagttcccaactcctctctaacaaacttgtaaagtggataagatctgcatccattgatcttgtttggaattgttgggt |
40959557 |
T |
|
| Q |
332 |
ttccactctcatatgcggtccttgcactttcaacctcttttggcaagaggctcttcaactcttcctcaaaagttgcaatcttttgaaagattgaagtgtt |
431 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40959556 |
ttccactctcatatgcggtccttgcactttcaacctcttttggcaagaggctcttcaactcttcctcaaaagttgcaatcttttgaaagattgaagtgtt |
40959457 |
T |
|
| Q |
432 |
caaattcttctcactc |
447 |
Q |
| |
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|||||||||||||||| |
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| T |
40959456 |
caaattcttctcactc |
40959441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 114 - 443
Target Start/End: Original strand, 28183610 - 28183939
Alignment:
| Q |
114 |
ttaacaaataggaagaggagcaccgttccactctcccaagcattcaagaagaggatcaatgatttttccctgacacatagctgtgaataatttgtcacac |
213 |
Q |
| |
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||||||||| ||||||||||| |||||||||||||| | ||||| | ||||||||||| ||||| || || |||||||||||||| |||||||| ||| |
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| T |
28183610 |
ttaacaaattggaagaggagcgccgttccactctccgagacattccataagaggatcaacaattttaccttggcacatagctgtgaacaatttgtcgcac |
28183709 |
T |
|
| Q |
214 |
acttcaccgggtgaaatgacattttctccagttagtaaaccagttcccaactcctctctaacaaacttgtaaagtggataagatctgcatccattgatct |
313 |
Q |
| |
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|||| || || || || || ||||| || ||||| || | ||||||||||||||||||||||||||||| | ||||||||| || ||| | || |||| |
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| T |
28183710 |
tcttctcctggcgatatcactttttcaccggttagcaacgctgttcccaactcctctctaacaaacttgtacaatggataagacctacattccttaatct |
28183809 |
T |
|
| Q |
314 |
tgtttggaattgttgggtttccactctcatatgcggtccttgcactttcaacctcttttggcaagaggctcttcaactcttcctcaaaagttgcaatctt |
413 |
Q |
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|||||| |||| | |||| | |||||||| ||||||||||||||||| || |||||||||| |||||| || |||||||| ||||||||||| |
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| T |
28183810 |
tgtttgaaattccactttgtccattttcatatgctgtccttgcactttcaacttcctttggcaagatagccttcaattcatcctcaaatgttgcaatctt |
28183909 |
T |
|
| Q |
414 |
ttgaaagattgaagtgttcaaattcttctc |
443 |
Q |
| |
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||| |||||||| |||||| |||||||||| |
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|
| T |
28183910 |
ttggaagattgatgtgttcgaattcttctc |
28183939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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