View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4540_low_6 (Length: 414)
Name: NF4540_low_6
Description: NF4540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4540_low_6 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 371; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 17 - 403
Target Start/End: Complemental strand, 38822888 - 38822502
Alignment:
| Q |
17 |
aatactcaaactctataacttgttcaccaagctccgatttaatcgttgaagatgatgatgaggttgaattggatgaagaagagggattagaagccacgtt |
116 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
38822888 |
aatactcaaactctataatttgttcaccaagctccgatttaaccgttgaagatgatgatgaggttgaattggatgaagaagagggattagaagccacatt |
38822789 |
T |
|
| Q |
117 |
gcttggaaaatgttcttgaggaaaattaagaatagcagaagaacctctcatatcaaaagcagcgcgatcataagctcttgcagcttcctcagcagtgtta |
216 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38822788 |
gcttggaaaatgttcttgaggaaaattgagaatagcagaagaacctctcatatcaaaagcagcgcgatcataagctcttgcagcttcctcagcagtgtta |
38822689 |
T |
|
| Q |
217 |
aatgtaccaagccaaactcgagcaccatgcctagccgaatctcgaatctctgcagcaaattttccccatggccttatcctcactcctctatacttaattt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38822688 |
aatgtaccaagccaaactcgagcaccatgcctagccgaatctcgaatctctgcagcaaattttccccatggccttatcctcactcctctatacttaattt |
38822589 |
T |
|
| Q |
317 |
gctttggtaattcacattcactcacctttttctttctttcattttccattgtgtgtacaagaatgttaacataataacttagccttt |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38822588 |
gctttggtaattcacattcactcacctttttctttctttcattttccattgtgtgtacaagaatgttaacataataacttagccttt |
38822502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 17 - 330
Target Start/End: Complemental strand, 38809954 - 38809626
Alignment:
| Q |
17 |
aatactcaaactctataacttgttcaccaagctccgatttaatcgttgaagatgatgatga---ggttgaattggatgaagaagagggattagaag---- |
109 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||| | |||||||||||||||| |||||||||||| |||||||| || ||||||| |
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| T |
38809954 |
aatactcaaactctataacttgttcaacaagttccgatttaacctttgaagatgatgatgatgaggttgaattggaggaagaagacggcttagaagggtt |
38809855 |
T |
|
| Q |
110 |
-----ccacgttgcttggaaaat---gttcttgaggaaaattaagaatagcagaagaacctctcatatcaaaagcagcgcgatcataagctcttgcagct |
201 |
Q |
| |
|
|||| ||| ||||||| |||| |||||||| ||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||| |
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|
| T |
38809854 |
atataccacactgcaaggaaaataatgttcatgaggaaagttaagaatagctgaagaacctctcatttcaaaagcagcacgatcataagctcttgcagct |
38809755 |
T |
|
| Q |
202 |
tcctcagcagtgttaaatgtaccaagccaaactcgagcaccatgcctagccgaatctcgaatctctgcagcaaattttccccatggccttatcctcactc |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||| |||| |
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|
| T |
38809754 |
tcctcagcagtgttaaatgtaccaagccaaactcgagctccatgtctagccgaatctcgaatctctgctgcacattttccccatggccttatccttactc |
38809655 |
T |
|
| Q |
302 |
ctctatacttaatttgctttggtaattca |
330 |
Q |
| |
|
|||||||||| |||| ||||||||||||| |
|
|
| T |
38809654 |
ctctatactttattttctttggtaattca |
38809626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 121 - 384
Target Start/End: Complemental strand, 38811908 - 38811639
Alignment:
| Q |
121 |
ggaaaatgttcttgaggaaaattaagaatagcagaagaacctctcatatcaaaagcagcgcgatcataagc-----tcttgcagcttcctcagcagtgtt |
215 |
Q |
| |
|
||||||||||| || ||||| || ||||| || ||||||||||||| ||||||||||| |||||||||| | |||||||||||| | ||| || |
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|
| T |
38811908 |
ggaaaatgttcatgtggaaagttgagaatggccaaagaacctctcatttcaaaagcagcatgatcataagcccttgttttgcagcttccttactagtatt |
38811809 |
T |
|
| Q |
216 |
aaatgtaccaagccaaactcgagcaccatgcctagccgaatctcgaatc-tctgcagcaaattttccccatggccttatcctcactcctctatacttaat |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| | | | ||||||| |||||||| ||||| ||||||||||||| || |
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|
| T |
38811808 |
aaatgtaccaagccaaactcgagcaccatgcctagccgaatctctaatcttaggggggaaattttggccatggccggatcctttctcctctatacttgat |
38811709 |
T |
|
| Q |
315 |
ttgctttggtaattcacattcactcacctttttctttctttcattttccattgtgtgtacaagaatgtta |
384 |
Q |
| |
|
|||| ||| |||||| |||| |||||||| || | || ||||||||||||||||||||||||||| |
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|
| T |
38811708 |
ttgcattgttaattcctcttcattcacctttccctctacgtcgttttccattgtgtgtacaagaatgtta |
38811639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 38812040 - 38811996
Alignment:
| Q |
16 |
caatactcaaactctataacttgttcaccaagctccgatttaatc |
60 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||| ||||||||| |
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|
| T |
38812040 |
caatactcaaaatctagaacttgttcaccaagctctgatttaatc |
38811996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 136 - 289
Target Start/End: Complemental strand, 32986435 - 32986282
Alignment:
| Q |
136 |
ggaaaattaagaatagcagaagaacctctcatatcaaaagcagcgcgatcataagctcttgcagcttcctcagcagtgttaaatgtaccaagccaaactc |
235 |
Q |
| |
|
|||||||||||||| ||| | ||||||||||||| ||||||||| | ||||||||||||||||||||| ||||||||||| || || |||||||| | | |
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|
| T |
32986435 |
ggaaaattaagaattgcaaatgaacctctcatattaaaagcagctctatcataagctcttgcagcttcttcagcagtgttgaaagtgccaagccatatcc |
32986336 |
T |
|
| Q |
236 |
gagcaccatgcctagccgaatctcgaatctctgcagcaaattttccccatggcc |
289 |
Q |
| |
|
||| |||||| ||||| |||||||| || ||||||||||||||||||| |
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|
| T |
32986335 |
tctgaccttgcctattggaatcacgaatctcggccgcaaattttccccatggcc |
32986282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 159 - 287
Target Start/End: Original strand, 30736443 - 30736571
Alignment:
| Q |
159 |
acctctcatatcaaaagcagcgcgatcataagctcttgcagcttcctcagcagtgttaaatgtaccaagccaaactcgagcaccatgcctagccgaatct |
258 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||||||||||| || ||| |||||| || ||||| || || ||||| | ||||| | || |
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|
| T |
30736443 |
acctctcatctcaaaagcagcacgatcataagctcttgcagcttcctccgcggtgagaaatgtgcctagccacacgcgtgcaccgcgtctagctgggtcc |
30736542 |
T |
|
| Q |
259 |
cgaatctctgcagcaaattttccccatgg |
287 |
Q |
| |
|
|||||||| || ||||| ||||||||||| |
|
|
| T |
30736543 |
cgaatctcagccgcaaactttccccatgg |
30736571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 187 - 233
Target Start/End: Complemental strand, 39360444 - 39360398
Alignment:
| Q |
187 |
taagctcttgcagcttcctcagcagtgttaaatgtaccaagccaaac |
233 |
Q |
| |
|
|||||||| |||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
39360444 |
taagctctagcagcttcttcagcagtgttgaatgtaccaagccaaac |
39360398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 259 - 305
Target Start/End: Original strand, 40444680 - 40444726
Alignment:
| Q |
259 |
cgaatctctgcagcaaattttccccatggccttatcctcactcctct |
305 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||| |||| |||||||| |
|
|
| T |
40444680 |
cgaatttctgcagcatattttccccatggccttctccttactcctct |
40444726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 215
Target Start/End: Complemental strand, 32993141 - 32993084
Alignment:
| Q |
158 |
aacctctcatatcaaaagcagcgcgatcataagctcttgcagcttcctcagcagtgtt |
215 |
Q |
| |
|
|||| ||||||| ||||||| | | |||||||||||| || ||||||||||||||||| |
|
|
| T |
32993141 |
aacccctcatattaaaagcatctctatcataagctctagctgcttcctcagcagtgtt |
32993084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 215
Target Start/End: Complemental strand, 32998498 - 32998441
Alignment:
| Q |
158 |
aacctctcatatcaaaagcagcgcgatcataagctcttgcagcttcctcagcagtgtt |
215 |
Q |
| |
|
|||| ||||||| ||||||| | | |||||||||||| || ||||||||||||||||| |
|
|
| T |
32998498 |
aacccctcatattaaaagcatctctatcataagctctagctgcttcctcagcagtgtt |
32998441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 33003147 - 33003083
Alignment:
| Q |
151 |
gcagaagaacctctcatatcaaaagcagcgcgatcataagctcttgcagcttcctcagcagtgtt |
215 |
Q |
| |
|
||||| ||||| ||||||| | ||||||| | |||||||||||| || ||||| ||||||||||| |
|
|
| T |
33003147 |
gcagatgaaccactcatattataagcagctctatcataagctctagccgcttcatcagcagtgtt |
33003083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 100 - 203
Target Start/End: Complemental strand, 35548102 - 35547999
Alignment:
| Q |
100 |
ggattagaagccacgttgcttggaaaatgttcttgaggaaaattaagaatagcagaagaacctctcatatcaaaagcagcgcgatcataagctcttgcag |
199 |
Q |
| |
|
|||||| ||||||||||| |||||||||||| || |||||| | |||||||| ||||||||||| ||||| |||||||| | |||||||||||||||| |
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|
| T |
35548102 |
ggattataagccacgttgtatggaaaatgttcatgtggaaaaattagaatagctgaagaacctctaatatcgaaagcagcacagtcataagctcttgcag |
35548003 |
T |
|
| Q |
200 |
cttc |
203 |
Q |
| |
|
|||| |
|
|
| T |
35548002 |
cttc |
35547999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 262 - 309
Target Start/End: Complemental strand, 1008600 - 1008553
Alignment:
| Q |
262 |
atctctgcagcaaattttccccatggccttatcctcactcctctatac |
309 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||| ||||||||| |
|
|
| T |
1008600 |
atctctgcagcaaatttcccccatggccttcgcctcacacctctatac |
1008553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 8111468 - 8111500
Alignment:
| Q |
183 |
atcataagctcttgcagcttcctcagcagtgtt |
215 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |
|
|
| T |
8111468 |
atcataagctcttgcagcttcttcagcagtgtt |
8111500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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