View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4540_low_7 (Length: 410)
Name: NF4540_low_7
Description: NF4540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4540_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 4 - 257
Target Start/End: Original strand, 56485255 - 56485508
Alignment:
| Q |
4 |
gaaggaactattagaaaagagagtgaagagaagacccacccaacaccacctaaaggaacgccatgagaagaagttacatgacgcttagcaaaaggatcaa |
103 |
Q |
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| T |
56485255 |
gaaggaaatattagaaaagagagtgaagagaagacccacccaacaccacctaaaggaacgccatgagaagaagttacatgacgcttagcaaaaggatcaa |
56485354 |
T |
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| Q |
104 |
tcattccaatctgagaaagaaaagcaaaaagaataatggttagatatcataagatatatagagatgaaaagaaggtataagattaagtacccttcctttg |
203 |
Q |
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| T |
56485355 |
tcattccaatctgagaaagaaaagcaaaaagaataatggttagatatcataagatatatagagatgaaaagaaggtataagattaagtacccttcctttg |
56485454 |
T |
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| Q |
204 |
gcagcttcttcacgaacatggcgccatagacgataaccaatgggagcctatata |
257 |
Q |
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| T |
56485455 |
gaagcttcttcacgaacatggcgccatagacgataaccaatgggagcctatata |
56485508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 317 - 410
Target Start/End: Original strand, 56485568 - 56485661
Alignment:
| Q |
317 |
acgtacaagatgaatcatctctttgaaagataaggtgaattctgatggaacatttgcatttgcatgattgtttaatttgcgctgccatgtaagt |
410 |
Q |
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| T |
56485568 |
acgtacaagatgaatcatctctttgaaagataaggtgaattctgatggaacatttgaatttgcatgattgtttaatttgcgctgccatgtaagt |
56485661 |
T |
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