View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4540_low_9 (Length: 365)
Name: NF4540_low_9
Description: NF4540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4540_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 38188105 - 38187772
Alignment:
| Q |
1 |
aaatggacttcgcaaaggttgagaagcgtgtgcgtacaacaggtggtgggagtagaggaactgtgaggtaatttttatgatgctgtcattgtaaaagtgc |
100 |
Q |
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| T |
38188105 |
aaatggacttcgcaaaggttgagaagcgtgtgcgtacaacaggtggtgggagtagaggaactgtgaggtaatttttatgatgctgtcattgtaaaagtgc |
38188006 |
T |
|
| Q |
101 |
atagcagagttgattggtaattatcacttctattatttttcttacgtggattgtaactgaaatatcttaatcttcaggaacctacgtatccgagaggata |
200 |
Q |
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| T |
38188005 |
atagcagagttgattggtaattatcacttctattatttttcttacgtggattgtaactgaaatatcttaatcttcaggaacctacgtatccgagaggata |
38187906 |
T |
|
| Q |
201 |
ctgcaaaatatcttctca------atgtcaattctgcacattatgaccccaagactaggtccatgcgtgaagatcctcttccagagtcagatccaaatga |
294 |
Q |
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| T |
38187905 |
ctgcaaaatatcttctcaatctcgatgtcaattctgcacattatgaccccaagactaggtccatgcgtgaagatcctcttccagagtcagatccaaatga |
38187806 |
T |
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| Q |
295 |
aaagttttacttggtaacttagtcttaaggatta |
328 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
38187805 |
aaagttttacttggtaacttagtcttaaggatta |
38187772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 158; Significance: 5e-84; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 3 - 311
Target Start/End: Original strand, 38922780 - 38923108
Alignment:
| Q |
3 |
atggacttcgcaaaggttgagaagcgtgtgcgtacaacaggtggtgggagtagaggaactgtgaggtaatttttatgatgctgtcattgtaaaagtgcat |
102 |
Q |
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||||| || ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||| | |||| |
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| T |
38922780 |
atggattttgcaaaggttgagaagcgtgtgcgaacaacaggtggtgggagtacaggaactgtgaggtaatttttatgttgctctcattgtaataatgcag |
38922879 |
T |
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| Q |
103 |
agcagagttgattggt------------aattatcacttctattatttttcttacgtggattgtaactgaaatat--cttaatcttcaggaacctacgta |
188 |
Q |
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|| |||| |||||| |||||||| |||||| ||||||||||| || ||||||| |||||| ||||| ||||||||||||||||| |
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| T |
38922880 |
cgccaagtttattggtccgttaaattacaattatcagttctataatttttcttacatgaattgtaatgtaaatatatcttaaccttcaggaacctacgta |
38922979 |
T |
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| Q |
189 |
tccgagaggatactgcaaaatatcttctcaat------gtcaattctgcacattatgaccccaagactaggtccatgcgtgaagatcctcttccagagtc |
282 |
Q |
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| T |
38922980 |
ttcgagaggatactgcaaaatatcttctcaatcttgatgtcaattctgcacattatgaccccaagaccaggtccatgcgtgaagatcctcttccagaggc |
38923079 |
T |
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| Q |
283 |
agatccaaatgaaaagttttacttggtaa |
311 |
Q |
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| T |
38923080 |
agatccaaatgaaaagttttacttggtaa |
38923108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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