View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4541_high_1 (Length: 888)

Name: NF4541_high_1
Description: NF4541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4541_high_1
NF4541_high_1
[»] chr4 (21 HSPs)
chr4 (12-869)||(42391868-42392733)
chr4 (9-154)||(39868921-39869064)
chr4 (648-811)||(42386634-42386808)
chr4 (9-132)||(21623096-21623219)
chr4 (9-107)||(21621869-21621967)
chr4 (43-141)||(47874576-47874674)
chr4 (41-129)||(31844746-31844834)
chr4 (42-141)||(53771061-53771160)
chr4 (46-130)||(54574448-54574532)
chr4 (9-121)||(2786253-2786367)
chr4 (43-133)||(47878497-47878587)
chr4 (81-154)||(53770332-53770405)
chr4 (9-133)||(4703196-4703320)
chr4 (43-151)||(26685435-26685538)
chr4 (9-108)||(25810392-25810491)
chr4 (43-129)||(48740033-48740119)
chr4 (87-152)||(39870731-39870796)
chr4 (17-93)||(24746062-24746138)
chr4 (9-117)||(42278085-42278193)
chr4 (9-104)||(24753540-24753635)
chr4 (408-441)||(4010590-4010623)
[»] chr7 (28 HSPs)
chr7 (12-137)||(2677768-2677893)
chr7 (19-137)||(24844589-24844707)
chr7 (12-116)||(19985248-19985352)
chr7 (81-133)||(44333159-44333211)
chr7 (11-145)||(25621702-25621836)
chr7 (43-141)||(48777268-48777366)
chr7 (19-140)||(8375572-8375693)
chr7 (29-133)||(48646069-48646173)
chr7 (9-132)||(48788651-48788774)
chr7 (12-138)||(39824144-39824270)
chr7 (9-154)||(10899052-10899197)
chr7 (81-141)||(8374926-8374986)
chr7 (9-141)||(12223678-12223810)
chr7 (85-133)||(35727719-35727767)
chr7 (44-141)||(43457469-43457566)
chr7 (9-133)||(7258295-7258419)
chr7 (9-117)||(24288845-24288953)
chr7 (9-132)||(42477402-42477524)
chr7 (81-135)||(8048835-8048889)
chr7 (12-126)||(22621154-22621268)
chr7 (43-133)||(44334462-44334552)
chr7 (12-151)||(8879525-8879665)
chr7 (81-141)||(34704921-34704981)
chr7 (81-141)||(39708115-39708175)
chr7 (83-141)||(21062829-21062887)
chr7 (19-89)||(24844737-24844807)
chr7 (43-117)||(34888936-34889010)
chr7 (81-114)||(48647494-48647527)
[»] chr8 (18 HSPs)
chr8 (9-141)||(32898424-32898556)
chr8 (9-101)||(28524810-28524902)
chr8 (9-141)||(10407563-10407695)
chr8 (26-132)||(8569429-8569535)
chr8 (12-154)||(31075272-31075413)
chr8 (9-143)||(35177405-35177539)
chr8 (29-133)||(35178803-35178907)
chr8 (43-154)||(24198933-24199044)
chr8 (11-154)||(28006576-28006718)
chr8 (11-154)||(28063879-28064021)
chr8 (9-154)||(31073993-31074138)
chr8 (74-141)||(41754010-41754077)
chr8 (9-114)||(28619028-28619133)
chr8 (81-130)||(30134589-30134638)
chr8 (80-133)||(41754845-41754898)
chr8 (9-112)||(5738002-5738105)
chr8 (43-138)||(5965455-5965550)
chr8 (43-108)||(12637771-12637836)
[»] chr2 (26 HSPs)
chr2 (12-133)||(38853775-38853896)
chr2 (9-133)||(31091506-31091630)
chr2 (9-136)||(15441950-15442077)
chr2 (43-133)||(32766252-32766342)
chr2 (12-106)||(37607149-37607243)
chr2 (43-140)||(34582683-34582780)
chr2 (42-154)||(8420012-8420124)
chr2 (81-141)||(17330281-17330341)
chr2 (16-154)||(31443231-31443368)
chr2 (12-132)||(10728922-10729044)
chr2 (81-133)||(24459497-24459549)
chr2 (9-132)||(17466807-17466930)
chr2 (31-102)||(26586296-26586367)
chr2 (12-143)||(31090174-31090305)
chr2 (45-92)||(31442394-31442441)
chr2 (29-111)||(14704048-14704130)
chr2 (9-115)||(18675122-18675228)
chr2 (19-108)||(9616024-9616113)
chr2 (43-132)||(12746214-12746303)
chr2 (9-141)||(34037652-34037784)
chr2 (81-133)||(39015025-39015077)
chr2 (9-99)||(12004976-12005066)
chr2 (81-154)||(2910099-2910172)
chr2 (16-133)||(11985711-11985828)
chr2 (12-133)||(33439261-33439382)
chr2 (12-101)||(38854841-38854930)
[»] chr5 (24 HSPs)
chr5 (9-141)||(2464681-2464813)
chr5 (11-126)||(546017-546132)
chr5 (85-154)||(18400189-18400258)
chr5 (9-134)||(25590450-25590574)
chr5 (9-133)||(28591092-28591217)
chr5 (9-130)||(32640311-32640432)
chr5 (9-141)||(21069301-21069433)
chr5 (18-132)||(12445405-12445518)
chr5 (12-98)||(19271397-19271483)
chr5 (12-93)||(43099122-43099203)
chr5 (29-137)||(2466773-2466881)
chr5 (9-117)||(4592897-4593005)
chr5 (43-133)||(9538062-9538152)
chr5 (44-141)||(8074463-8074560)
chr5 (9-141)||(9537035-9537166)
chr5 (86-130)||(14891199-14891243)
chr5 (81-132)||(16611749-16611800)
chr5 (81-132)||(19182971-19183022)
chr5 (83-141)||(40612712-40612770)
chr5 (12-133)||(26327054-26327175)
chr5 (110-154)||(18004637-18004681)
chr5 (46-102)||(35538317-35538373)
chr5 (83-117)||(13651173-13651207)
chr5 (75-129)||(19186265-19186319)
[»] chr1 (24 HSPs)
chr1 (9-141)||(32665749-32665881)
chr1 (81-141)||(5782426-5782486)
chr1 (12-132)||(11060766-11060886)
chr1 (12-102)||(1001884-1001974)
chr1 (29-133)||(7945553-7945657)
chr1 (9-108)||(39725384-39725483)
chr1 (11-116)||(8975196-8975301)
chr1 (43-154)||(1001153-1001264)
chr1 (9-136)||(10333165-10333292)
chr1 (9-141)||(6612431-6612563)
chr1 (43-139)||(7944169-7944265)
chr1 (9-141)||(9339658-9339790)
chr1 (12-116)||(11829946-11830050)
chr1 (9-136)||(1407657-1407784)
chr1 (81-128)||(9341076-9341123)
chr1 (43-141)||(10332998-10333096)
chr1 (12-102)||(26518160-26518250)
chr1 (12-102)||(50107185-50107275)
chr1 (9-141)||(22856692-22856824)
chr1 (12-108)||(26519084-26519180)
chr1 (85-137)||(52440614-52440666)
chr1 (31-126)||(5783110-5783205)
chr1 (73-134)||(534600-534661)
chr1 (408-449)||(7528122-7528163)
[»] scaffold0039 (2 HSPs)
scaffold0039 (9-143)||(79083-79217)
scaffold0039 (72-141)||(74355-74424)
[»] chr3 (32 HSPs)
chr3 (29-141)||(17700530-17700642)
chr3 (29-141)||(17701918-17702030)
chr3 (12-116)||(39497244-39497348)
chr3 (9-141)||(52316991-52317123)
chr3 (43-151)||(19114535-19114643)
chr3 (9-117)||(53959079-53959187)
chr3 (12-154)||(40205880-40206023)
chr3 (43-141)||(40206951-40207049)
chr3 (81-133)||(19331128-19331180)
chr3 (9-141)||(20464081-20464213)
chr3 (81-137)||(52318368-52318424)
chr3 (75-141)||(2591639-2591705)
chr3 (43-141)||(2592020-2592118)
chr3 (43-133)||(33428448-33428538)
chr3 (43-141)||(45600952-45601049)
chr3 (81-133)||(48573005-48573057)
chr3 (9-141)||(55388085-55388217)
chr3 (9-116)||(36278989-36279096)
chr3 (32-117)||(11773053-11773138)
chr3 (44-124)||(26106985-26107065)
chr3 (81-133)||(34263825-34263877)
chr3 (9-101)||(40318694-40318786)
chr3 (81-132)||(19115197-19115248)
chr3 (12-91)||(30360447-30360526)
chr3 (81-132)||(47075402-47075453)
chr3 (81-116)||(49261585-49261620)
chr3 (43-133)||(26652617-26652707)
chr3 (19-141)||(47118040-47118162)
chr3 (87-133)||(47428614-47428660)
chr3 (9-114)||(36280296-36280401)
chr3 (81-126)||(47427887-47427932)
chr3 (80-129)||(50753841-50753890)
[»] scaffold0237 (2 HSPs)
scaffold0237 (13-132)||(1707-1825)
scaffold0237 (13-91)||(3009-3086)
[»] chr6 (11 HSPs)
chr6 (19-134)||(12676459-12676574)
chr6 (13-132)||(29845502-29845620)
chr6 (13-91)||(29856807-29856884)
chr6 (75-141)||(30748011-30748077)
chr6 (81-141)||(31218967-31219027)
chr6 (13-108)||(24621345-24621440)
chr6 (75-132)||(6468826-6468883)
chr6 (12-108)||(24621122-24621218)
chr6 (80-141)||(23507961-23508021)
chr6 (12-128)||(5265224-5265339)
chr6 (81-133)||(31219211-31219263)
[»] scaffold0034 (1 HSPs)
scaffold0034 (43-128)||(116080-116165)
[»] scaffold0232 (1 HSPs)
scaffold0232 (406-435)||(21423-21452)


Alignment Details
Target: chr4 (Bit Score: 623; Significance: 0; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 623; E-Value: 0
Query Start/End: Original strand, 12 - 869
Target Start/End: Original strand, 42391868 - 42392733
Alignment:
Q  12 tcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatt--taaggactagtttgtatttaatcatgagtcagggaccta 109  Q
    ||||||||||| | |||||||||||| | | |||||||||||||| |||||| ||||||  || |||||| |||||||||||||||||||||| ||||||    
T  42391868 tcatcagttaatagaagtttttaacgtctgggactaaactgataaaggaagtgcacattattagggactaatttgtatttaatcatgagtcagagaccta 42391967  T
Q  110 tgtgacagtgaggtgcagagtcagagactaaattaatcatttacttacat-actaatgaaacatcatcaaaatgacctagaactaacatccttaaaacaa 208  Q
    |||||||||||||||| ||||||||||||||| | |||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||| |    
T  42391968 tgtgacagtgaggtgcggagtcagagactaaagtgatcatttactcaaattactaatgaaacatcatcaaaatgacctagaactaacatccttaaaacta 42392067  T
Q  209 ccttagaaaaggcaagataaacttcaagaagctaagaagggaagccatggaaactgtttgagaaactggtaaaataaataaaccgcnnnnnnn---aaca 305  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||          ||      
T  42392068 ccttagacaaggcaagataaacttcaagaagctaagaagggaagccatgaaaactgtttgagaaactggtaaaatgaataaaccgcttttttttttaatg 42392167  T
Q  306 caaaccggttctgaaccggacccaaagcaaacctgaactgtttcgtnnnnnnn-ttggttttttctgaaacagtttaagaaaccaaaccataaattggat 404  Q
    |||||| ||||||||||||||||||| ||||| |||||| ||||||        ||||||||||||||||||| ||||||||||||||||||||||| ||    
T  42392168 caaaccagttctgaaccggacccaaaacaaacttgaactatttcgtaaaaaaaattggttttttctgaaacaggttaagaaaccaaaccataaattgaat 42392267  T
Q  405 atggtttggtttggtttatgaaccatgcacactcctagttataacaacttaacaagaagtatatccattaggtcactcaacacct-ggtatgaacctctt 503  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||    
T  42392268 atggtttggtttgatttatgaaccatgcacactcctagttataacaacttaacaagaagtataaccattacgtcactcaacaccttggtatgaacctctt 42392367  T
Q  504 tcccgcaacactactaacaatacacatggccatttcaaatgagtaatatttatgaattttaaaaggtaaatatgtgcttaaattttaagactgaagaata 603  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  42392368 tcccgcaacactgctaacaatacacatggccatttcaaatgagtaatatttatgaattttaaaaggtaaatatgtgcttaaattttaagacagaagaata 42392467  T
Q  604 caccgtatgtatcaaaaagaagcatgttaacatgaaaagtaccagttataattggctcatcttcaaacttttcagacaaatgaaaacaaatttctcttcc 703  Q
    ||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42392468 cactgtatgtatcgaaaagaagcatgtcaacatgaaaagtaccagttataattggctcatcttcaaacttttcagacaaatgaaaacaaatttctcttcc 42392567  T
Q  704 atttttatttagtgtagctaaataaattatttagactaaacttcaagtagcacacatctaaatacaagtattcattctgattttatatgttgatgtaata 803  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  42392568 atttttatttagtgtagctaaataaattattgagactaaacttcaagtagcccacatctaaatacaagtattcattttgattttatatgttgatgtaata 42392667  T
Q  804 atgtttttgcagactttaagctatttagattatctcaaattcaaagcattatacacaactggagta 869  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42392668 atgtttttgcagactttaagctatttagattatctcaaattcaaagcattatacacaactggagta 42392733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 9 - 154
Target Start/End: Complemental strand, 39869064 - 39868921
Alignment:
Q  9 acatcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacct 108  Q
    ||||||||| |||||| || | ||||||| | | ||||||| ||||||||||||| || | |  |  ||| ||||||||||||| |||||||||||||||    
T  39869064 acatcatcacttaacataattatttaacgtcagagactaaagtgataacggaagtgcagagtcga--acttgtttgtatttaattatgagtcagggacct 39868967  T
Q  109 atgtgacagtgaggtgcagagtcagagactaaattaatcatttact 154  Q
     ||| |||| ||||||||||||||||||||||| |||  |||||||    
T  39868966 ttgtaacagcgaggtgcagagtcagagactaaagtaacaatttact 39868921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 648 - 811
Target Start/End: Original strand, 42386634 - 42386808
Alignment:
Q  648 gttataattggctcatcttcaaacttttcagacaaatgaaaacaaatttctcttccattttt---attt-------agtgtagctaaataaattattt-a 736  Q
    |||||| |||| ||||||||||| ||||  |||||||||||||||| |||||||||||||||   ||||       |||||||||||||||||||||| |    
T  42386634 gttatatttggttcatcttcaaattttttcgacaaatgaaaacaaaattctcttccatttttcttattttttatacagtgtagctaaataaattatttaa 42386733  T
Q  737 gactaaacttcaagtagcacacatctaaatacaagtattcattctgattttatatgttgatgtaataatgttttt 811  Q
    |||||||| | |||||   ||||||| |||  |||| ||||||| |||||||| || | ||||||||||||||||    
T  42386734 gactaaacctaaagtaaaccacatcttaatgtaagttttcattccgattttatttgctaatgtaataatgttttt 42386808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 9 - 132
Target Start/End: Original strand, 21623096 - 21623219
Alignment:
Q  9 acatcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacct 108  Q
    ||||||| |||||||| || | ||||||| ||| ||||||| ||||||| ||||| |||||| |||||||| ||||||||||||| ||| ||||||| |     
T  21623096 acatcattagttaacataattatttaacgtcggggactaaagtgataacagaagtgcacattcaaggactattttgtatttaatcctgaatcagggaaca 21623195  T
Q  109 atgtgacagtgaggtgcagagtca 132  Q
     |||||||  ||| ||||||||||    
T  21623196 ttgtgacaacgagatgcagagtca 21623219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 9 - 107
Target Start/End: Complemental strand, 21621967 - 21621869
Alignment:
Q  9 acatcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacc 107  Q
    |||||||||||||||| || | ||||||  | | ||||||| ||||||||||||| |||||| || ||||| ||||||||||||| |||||||||||||    
T  21621967 acatcatcagttaacataattatttaacatcagggactaaagtgataacggaagtgcacattcaatgactattttgtatttaatcctgagtcagggacc 21621869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 43 - 141
Target Start/End: Complemental strand, 47874674 - 47874576
Alignment:
Q  43 gactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagagtcagagactaaa 141  Q
    ||||||| ||||||||||||| || | | | |||||  ||||||||||||| |||||||||||||||||||| || ||| |||||| ||||||||||||    
T  47874674 gactaaagtgataacggaagtgcagaatcagggacttatttgtatttaatcttgagtcagggacctatgtgatagcgagctgcagaatcagagactaaa 47874576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 41 - 129
Target Start/End: Complemental strand, 31844834 - 31844746
Alignment:
Q  41 gtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagag 129  Q
    ||||| ||| |||||| ||||||  | | ||| ||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  31844834 gtgaccaaagtgataagggaagtgtagagttagggacttgtttgtatttaatcctgagtcagggacctatgtgacagcgaggtgcagag 31844746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 141
Target Start/End: Original strand, 53771061 - 53771160
Alignment:
Q  42 tgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagagtcagagactaaa 141  Q
    |||||||| ||||||||||||| || | | | || ||  ||||||||||||  ||||||||||||||||||||||  ||||||||||||||| |||||||    
T  53771061 tgactaaagtgataacggaagtgcagagtcaggggcttctttgtatttaattctgagtcagggacctatgtgacaacgaggtgcagagtcagggactaaa 53771160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 46 - 130
Target Start/End: Complemental strand, 54574532 - 54574448
Alignment:
Q  46 taaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagagt 130  Q
    |||| ||||||||||||| || | ||||| |||  ||||||||||||| |||||||| |||||||||||||| ||| ||||||||    
T  54574532 taaagtgataacggaagtgcagagttaagaacttatttgtatttaatcctgagtcagagacctatgtgacagcgagatgcagagt 54574448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 121
Target Start/End: Complemental strand, 2786367 - 2786253
Alignment:
Q  9 acatcatcagttaacaaaagtttttaacgcc--ggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggac 106  Q
    |||| |||||||||||||| | ||||||| |  | | |||||| ||||||||||||| |||||| ||||| || ||||||||||||| ||||||| | ||    
T  2786367 acattatcagttaacaaaattatttaacgtcatgataactaaaatgataacggaagtgcacattcaaggagtaatttgtatttaatcctgagtcatgaac 2786268  T
Q  107 ctatgtgacagtgag 121  Q
    || ||||||| ||||    
T  2786267 ctttgtgacactgag 2786253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 133
Target Start/End: Original strand, 47878497 - 47878587
Alignment:
Q  43 gactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagagtcag 133  Q
    ||||||| |||||||||||||  | | | | |||||  |||||||||||||  ||||||||||||||||| |||| |||||||||||||||    
T  47878497 gactaaagtgataacggaagtgtagagtcagggacttatttgtatttaatccagagtcagggacctatgtaacagcgaggtgcagagtcag 47878587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 81 - 154
Target Start/End: Complemental strand, 53770405 - 53770332
Alignment:
Q  81 tttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagagtcagagactaaattaatcatttact 154  Q
    ||||||||||||  ||||||||| ||||||||||  | ||||||||||||||||||||||| | | ||||||||    
T  53770405 tttgtatttaattctgagtcaggaacctatgtgaatgcgaggtgcagagtcagagactaaagtgaccatttact 53770332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 133
Target Start/End: Original strand, 4703196 - 4703320
Alignment:
Q  9 acatcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacct 108  Q
    ||||||||| |||| | || | ||||| ||| | ||||||| |||||||||||||  ||| | || ||||  ||||||||||||  ||||| ||||||||    
T  4703196 acatcatcacttaatagaattatttaatgccagagactaaagtgataacggaagtgtacagtcaaagacttctttgtatttaattctgagttagggacct 4703295  T
Q  109 atgtgacagtgaggtgcagagtcag 133  Q
    ||||||||| ||| || ||||||||    
T  4703296 atgtgacagcgagatgtagagtcag 4703320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 151
Target Start/End: Original strand, 26685435 - 26685538
Alignment:
Q  43 gactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagagtcagagactaaat 142  Q
    ||||||| ||||||||||||| || | | |||||||  | |||||||||     ||| ||||||||||||||||| ||||||||||||||| |||||||     
T  26685435 gactaaagtgataacggaagtgcatagtcaaggacttctatgtatttaa-----agtgagggacctatgtgacagcgaggtgcagagtcagggactaaaa 26685529  T
Q  143 taatcattt 151  Q
    ||| |||||    
T  26685530 taaccattt 26685538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 108
Target Start/End: Original strand, 25810392 - 25810491
Alignment:
Q  9 acatcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacct 108  Q
    |||||||||||||||| ||||| |||||| | | ||||||| ||||| ||||||| |||||| |  | ||| ||||||||||||| ||| | ||||||||    
T  25810392 acatcatcagttaacagaagttattaacgtcagagactaaagtgatagcggaagtgcacattcataggctactttgtatttaatcttgaatgagggacct 25810491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 129
Target Start/End: Original strand, 48740033 - 48740119
Alignment:
Q  43 gactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagag 129  Q
    ||||||| ||||||| ||||| || | ||  |||||  |||||||||||| |||||||||||| ||| |||||| ||||||||||||    
T  48740033 gactaaagtgataacagaagtgcagagttggggacttctttgtatttaattatgagtcagggatctacgtgacaatgaggtgcagag 48740119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 152
Target Start/End: Original strand, 39870731 - 39870796
Alignment:
Q  87 tttaatcatgagtcagggacctatgtgacagtgaggtgcagagtcagagactaaattaatcattta 152  Q
    ||||||| ||| ||||| || |||||||||| |||||||||||||||||| |||| | ||||||||    
T  39870731 tttaatcttgactcaggaacttatgtgacagcgaggtgcagagtcagagattaaagtgatcattta 39870796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 24746062 - 24746138
Alignment:
Q  17 agttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatc 93  Q
    |||||| |||| | ||||||| ||  || |||| ||||||||||||| |||||||||||| || |||||||||||||    
T  24746062 agttaataaaattatttaacgtcgtggattaaagtgataacggaagtgcacatttaaggagtactttgtatttaatc 24746138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 117
Target Start/End: Complemental strand, 42278193 - 42278085
Alignment:
Q  9 acatcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacct 108  Q
    ||||||||| |||||| |  ||||||||| | | || |||| ||||||||||||| || | | | | |||  |||||||||||||  |||||||||||||    
T  42278193 acatcatcacttaacagatttttttaacgtcagggattaaagtgataacggaagtgcagagtcaggaacttatttgtatttaatcccgagtcagggacct 42278094  T
Q  109 atgtgacag 117  Q
    |||||||||    
T  42278093 atgtgacag 42278085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 104
Target Start/End: Original strand, 24753540 - 24753635
Alignment:
Q  9 acatcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcaggg 104  Q
    ||||||||||||||||||| | ||||||||   |||||||| ||||||| ||||| |||||| | |   || ||| |||||||| |||||||||||    
T  24753540 acatcatcagttaacaaaattatttaacgcgaatgactaaagtgataacagaagtgcacattcaggagttactttatatttaattatgagtcaggg 24753635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 408 - 441
Target Start/End: Original strand, 4010590 - 4010623
Alignment:
Q  408 gtttggtttggtttatgaaccatgcacactccta 441  Q
    ||||||||||||||||||||||||||||| ||||    
T  4010590 gtttggtttggtttatgaaccatgcacaccccta 4010623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 3e-26; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 12 - 137
Target Start/End: Original strand, 2677768 - 2677893
Alignment:
Q  12 tcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatg 111  Q
    |||||||||||| ||||||||||||||  | |||||||||||||||| |||| |||||||| ||| || |||||||||||||||||||||  ||||| ||    
T  2677768 tcatcagttaactaaagtttttaacgcgagggactaaactgataacgaaagtgcacatttagggaatactttgtatttaatcatgagtcatagacctttg 2677867  T
Q  112 tgacagtgaggtgcagagtcagagac 137  Q
    |||||  ||||| |||||||| ||||    
T  2677868 tgacaacgaggtacagagtcaaagac 2677893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 24844707 - 24844589
Alignment:
Q  19 ttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatgtgacagt 118  Q
    |||||||||||||||||||   | |||||||||||||| |||||| |||||| || ||||| ||||||||||||| ||||| | ||||||  |||||||     
T  24844707 ttaacaaaagtttttaacgtttgagactaaactgataatggaagtgcacattcaatgactactttgtatttaatcctgagttatggaccttggtgacagc 24844608  T
Q  119 gaggtgcagagtcagagac 137  Q
    |||||||||||||||||||    
T  24844607 gaggtgcagagtcagagac 24844589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 19985248 - 19985352
Alignment:
Q  12 tcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatg 111  Q
    |||||||||||||||||||||||||  | | || ||||||| |||||||| | ||||| ||||||||| |||||||||||||  |||||| |||||| ||    
T  19985248 tcatcagttaacaaaagtttttaacatcagggattaaactggtaacggaaatgcacatctaaggactactttgtatttaatctcgagtcatggacctttg 19985347  T
Q  112 tgaca 116  Q
    |||||    
T  19985348 tgaca 19985352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 81 - 133
Target Start/End: Complemental strand, 44333211 - 44333159
Alignment:
Q  81 tttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagagtcag 133  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  44333211 tttgtatttaatcatgagtcagggacctatgtgacagcgaggtgcagagtcag 44333159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 11 - 145
Target Start/End: Original strand, 25621702 - 25621836
Alignment:
Q  11 atcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctat 110  Q
    ||||||||||||||||| | ||||||| | ||||||||| ||||||| ||||| |||||| ||  |||| ||||||||||||| ||| |||   ||||||    
T  25621702 atcatcagttaacaaaattatttaacgtcagtgactaaagtgataacagaagtgcacattcaaaaactaatttgtatttaatcctgaatcaaaaacctat 25621801  T
Q  111 gtgacagtgaggtgcagagtcagagactaaattaa 145  Q
    || || ||||| |||||||| ||  ||||||||||    
T  25621802 gtaacggtgagatgcagagtgaggcactaaattaa 25621836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 43 - 141
Target Start/End: Complemental strand, 48777366 - 48777268
Alignment:
Q  43 gactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagagtcagagactaaa 141  Q
    ||||||| ||||||||||||| || | | | ||| |  |||||||||||||||||||||||||| |||||||||| ||| |||||| ||||||||||||    
T  48777366 gactaaagtgataacggaagtgcagagtcagggaattatttgtatttaatcatgagtcagggacttatgtgacagcgagctgcagaatcagagactaaa 48777268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 8375572 - 8375693
Alignment:
Q  19 ttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatgtgacagt 118  Q
    ||||||||| | ||||||| ||  ||||||| ||||||||||||| || | | |   |||  ||||||||||||||||||||||||||||||||||||||    
T  8375572 ttaacaaaattatttaacgtcgcggactaaattgataacggaagtgcagagtcagaaacttctttgtatttaatcatgagtcagggacctatgtgacagt 8375671  T
Q  119 gaggtgcagagtcagagactaa 140  Q
    | |||||  |||||| ||||||    
T  8375672 gcggtgcgaagtcagggactaa 8375693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 29 - 133
Target Start/End: Complemental strand, 48646173 - 48646069
Alignment:
Q  29 tttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcaga 128  Q
    ||||||||| | | ||||||| |||||||||||||  | | | | |||||  ||||||||||||| ||||||||||||||||||||||| |||||||| |    
T  48646173 tttttaacgacagagactaaagtgataacggaagtgtagagtcagggacttatttgtatttaatcctgagtcagggacctatgtgacagcgaggtgcata 48646074  T
Q  129 gtcag 133  Q
    |||||    
T  48646073 gtcag 48646069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 132
Target Start/End: Original strand, 48788651 - 48788774
Alignment:
Q  9 acatcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacct 108  Q
    |||||||||  |||||||  ||||||||| | | ||||||| ||||||||||||| || | | |  ||||  ||| |||||||| |||||||||||||||    
T  48788651 acatcatcacctaacaaatttttttaacgtcagagactaaagtgataacggaagtgcagagtcagagacttatttatatttaattatgagtcagggacct 48788750  T
Q  109 atgtgacagtgaggtgcagagtca 132  Q
    ||||||||| |||||||| |||||    
T  48788751 atgtgacagcgaggtgcaaagtca 48788774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 138
Target Start/End: Complemental strand, 39824270 - 39824144
Alignment:
Q  12 tcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatg 111  Q
    ||||||||||||||||| |||||  | | | ||||||||| |||||  |||| ||||||||  || || ||||||||||||||||||||||  |||| |     
T  39824270 tcatcagttaacaaaaggttttactgacagagactaaacttataacataagtgcacatttagagattattttgtatttaatcatgagtcagataccttta 39824171  T
Q  112 tgacagtgaggtgcagagtcagagact 138  Q
    ||||||| ||||| | |||||||||||    
T  39824170 tgacagtaaggtgtaaagtcagagact 39824144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 154
Target Start/End: Original strand, 10899052 - 10899197
Alignment:
Q  9 acatcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacct 108  Q
    ||||||||| |||||| |  ||||||||| | | ||||||| ||||||||||||| || | | |  ||||  ||||||||||||| || |||| ||| ||    
T  10899052 acatcatcacttaacagatttttttaacgtcagggactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcctgggtcaaggatct 10899151  T
Q  109 atgtgacagtgaggtgcagagtcagagactaaattaatcatttact 154  Q
    ||||||||| ||||||||||||||| ||| ||| |||  |||||||    
T  10899152 atgtgacagcgaggtgcagagtcagggaccaaagtaacaatttact 10899197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 81 - 141
Target Start/End: Complemental strand, 8374986 - 8374926
Alignment:
Q  81 tttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagagtcagagactaaa 141  Q
    ||||||||||||  |||||||| |||||||||||||| ||||||||||||||| |||||||    
T  8374986 tttgtatttaattctgagtcagagacctatgtgacagcgaggtgcagagtcagggactaaa 8374926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 141
Target Start/End: Original strand, 12223678 - 12223810
Alignment:
Q  9 acatcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacct 108  Q
    ||||||||| |||||| || | ||||||  | ||||||||| | ||||||||| | || | | | |||||  ||| ||||||||| ||||||||||||||    
T  12223678 acatcatcacttaacagaattatttaacatcagtgactaaagtaataacggaactgcagagtcagggacttctttatatttaatcctgagtcagggacct 12223777  T
Q  109 atgtgacagtgaggtgcagagtcagagactaaa 141  Q
    |||||||| ||| |||||| ||||| |||||||    
T  12223778 atgtgacattgatgtgcagtgtcagggactaaa 12223810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 85 - 133
Target Start/End: Complemental strand, 35727767 - 35727719
Alignment:
Q  85 tatttaatcatgagtcagggacctatgtgacagtgaggtgcagagtcag 133  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  35727767 tatttaatcctgagtcagggacctatgtgacagcgaggtgcagagtcag 35727719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 141
Target Start/End: Complemental strand, 43457566 - 43457469
Alignment:
Q  44 actaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagagtcagagactaaa 141  Q
    |||||| ||||||||||||| || | |   |||||  ||||||||||||| ||||||||||||||||| ||||| ||| |||||| |||| |||||||    
T  43457566 actaaagtgataacggaagtgcagagtcggggacttatttgtatttaatcctgagtcagggacctatgcgacagcgagctgcagaatcagggactaaa 43457469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 133
Target Start/End: Complemental strand, 7258419 - 7258295
Alignment:
Q  9 acatcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacct 108  Q
    ||||||||| |||||| |  ||||||||| | | ||||||| ||||||| ||||| || | | |  ||||  ||||||||||||| ||||| ||||||||    
T  7258419 acatcatcacttaacagatttttttaacgtcagggactaaagtgataacagaagtgcagagtcagagacttatttgtatttaatcctgagttagggacct 7258320  T
Q  109 atgtgacagtgaggtgcagagtcag 133  Q
    ||||||||  |||||| ||||||||    
T  7258319 atgtgacaacgaggtgtagagtcag 7258295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 117
Target Start/End: Original strand, 24288845 - 24288953
Alignment:
Q  9 acatcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacct 108  Q
    |||||||||||||||| || | | ||||||| | || |||| |||||| |||||| |||||| |||||||| |||||| |||||| ||||| || || ||    
T  24288845 acatcatcagttaacagaattatataacgccagagaataaagtgataatggaagtgcacattcaaggactactttgtaattaatcctgagttagagatct 24288944  T
Q  109 atgtgacag 117  Q
     ||||||||    
T  24288945 ttgtgacag 24288953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 132
Target Start/End: Complemental strand, 42477524 - 42477402
Alignment:
Q  9 acatcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacct 108  Q
    ||||||||| |||||| |  ||||||||| | | || |||| ||||||||||||| || | | | |||||  ||||||||||||| |||||||| |||||    
T  42477524 acatcatcacttaacatatttttttaacgtcagggattaaaatgataacggaagtgcagagtca-ggacttatttgtatttaatcctgagtcagagacct 42477426  T
Q  109 atgtgacagtgaggtgcagagtca 132  Q
    ||| ||||  ||||||||||||||    
T  42477425 atgcgacaacgaggtgcagagtca 42477402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 135
Target Start/End: Original strand, 8048835 - 8048889
Alignment:
Q  81 tttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagagtcagag 135  Q
    ||||||||||||| |||||||| ||||| |||| ||| |||||||||||||||||    
T  8048835 tttgtatttaatcttgagtcagagacctttgtgtcagcgaggtgcagagtcagag 8048889  T

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Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 126
Target Start/End: Complemental strand, 22621268 - 22621154
Alignment:
Q  12 tcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatg 111  Q
    ||||||||||||| |||||||||||| |   ||||| ||||||||| ||||| |||||| | |||||| ||| ||||||||| | ||| | |||||| |     
T  22621268 tcatcagttaacagaagtttttaacgacatagactagactgataacagaagtgcacattcagggactactttatatttaatcttaagttatggaccttta 22621169  T
Q  112 tgacagtgaggtgca 126  Q
    |||||  ||||||||    
T  22621168 tgacatagaggtgca 22621154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 133
Target Start/End: Original strand, 44334462 - 44334552
Alignment:
Q  43 gactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagagtcag 133  Q
    ||||||| |||||| |||||| || | | | |||||  ||| |||||||||||||||||||||||||||| |||| ||| |||||| ||||    
T  44334462 gactaaagtgataatggaagtgcagagtcagggacttatttatatttaatcatgagtcagggacctatgtaacagcgagctgcagaatcag 44334552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 151
Target Start/End: Original strand, 8879525 - 8879665
Alignment:
Q  12 tcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcaggga-cctat 110  Q
    |||| ||||||||||| | ||||||| | | ||||||| ||||||| ||| | |||||| | | |||| ||||||||||||| ||||||||| | | | |    
T  8879525 tcattagttaacaaaattatttaacgtcagggactaaagtgataacagaaatgcacattcaggaactactttgtatttaatcctgagtcaggaagctttt 8879624  T
Q  111 gtgacagtgaggtgcagagtcagagactaaattaatcattt 151  Q
     ||||||  |||||||||||||| ||| ||| | |||||||    
T  8879625 atgacagctaggtgcagagtcagggaccaaactgatcattt 8879665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 141
Target Start/End: Complemental strand, 34704981 - 34704921
Alignment:
Q  81 tttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagagtcagagactaaa 141  Q
    ||||||||||||| |||||||| | ||| |||||||  ||||||||||||| |||||||||    
T  34704981 tttgtatttaatcctgagtcagaggcctttgtgacaacgaggtgcagagtcggagactaaa 34704921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 141
Target Start/End: Complemental strand, 39708175 - 39708115
Alignment:
Q  81 tttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagagtcagagactaaa 141  Q
    |||||||| |||| ||||||| |||||| |||||| | ||||| |||||||||||||||||    
T  39708175 tttgtattcaatcttgagtcatggacctttgtgacggcgaggtacagagtcagagactaaa 39708115  T

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Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 141
Target Start/End: Complemental strand, 21062887 - 21062829
Alignment:
Q  83 tgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagagtcagagactaaa 141  Q
    ||||||||||| ||||||| |||||| | |||||| |||||||| |||||| |||||||    
T  21062887 tgtatttaatcctgagtcaaggacctttatgacagcgaggtgcaaagtcagggactaaa 21062829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 24844807 - 24844737
Alignment:
Q  19 ttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtattt 89  Q
    |||||| |||||||||||  | | |||||||||||||| ||||||  |||||||| ||||| |||||||||    
T  24844807 ttaacagaagtttttaacatcagggactaaactgataatggaagtgtacatttaaagactactttgtattt 24844737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 117
Target Start/End: Original strand, 34888936 - 34889010
Alignment:
Q  43 gactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatgtgacag 117  Q
    ||||||| ||||||||||||| || | ||||||||   ||| ||||||||||||||| || ||||| ||||||||    
T  34888936 gactaaagtgataacggaagtgcagagttaaggacatctttatatttaatcatgagtgagagacctttgtgacag 34889010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 114
Target Start/End: Original strand, 48647494 - 48647527
Alignment:
Q  81 tttgtatttaatcatgagtcagggacctatgtga 114  Q
    ||||||||||||| ||||||||||||||||||||    
T  48647494 tttgtatttaatcctgagtcagggacctatgtga 48647527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 9 - 141
Target Start/End: Original strand, 32898424 - 32898556
Alignment:
Q  9 acatcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacct 108  Q
    ||||||||| |||||| |  ||||||||| | | ||||||| ||||||||||||| || | | | |||||  ||||||||||||| | ||||||||||||    
T  32898424 acatcatcacttaacagatttttttaacgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcctaagtcagggacct 32898523  T
Q  109 atgtgacagtgaggtgcagagtcagagactaaa 141  Q
    ||||||||||||| ||||||||||| |||||||    
T  32898524 atgtgacagtgagttgcagagtcagggactaaa 32898556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 28524902 - 28524810
Alignment:
Q  9 acatcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtca 101  Q
    ||||||||||||||||||| | ||||||| | | ||||||| ||||||||||||| |||||| ||||| || ||||||||||||| |||||||    
T  28524902 acatcatcagttaacaaaattatttaacgtcagagactaaaatgataacggaagtgcacattcaaggattactttgtatttaatcctgagtca 28524810  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 9 - 141
Target Start/End: Original strand, 10407563 - 10407695
Alignment:
Q  9 acatcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacct 108  Q
    ||||||||| |||||| |  ||||||||| | |  |||||| ||||||||||||| || | ||| |||||  ||||| ||||||| | |||||  |||||    
T  10407563 acatcatcacttaacagatttttttaacgtcaggaactaaagtgataacggaagtgcaaagttatggacttatttgtgtttaatcctaagtcaatgacct 10407662  T
Q  109 atgtgacagtgaggtgcagagtcagagactaaa 141  Q
    ||||||||||||| |||||| ||||||||||||    
T  10407663 atgtgacagtgagctgcagaatcagagactaaa 10407695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 132
Target Start/End: Complemental strand, 8569535 - 8569429
Alignment:
Q  26 aagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatgtgacagtgaggtgc 125  Q
    |||||||||||| | | |||||||||||||||| |||| |||||| |   |||| |||||||||||||||||||||  ||||| ||||| || ||||||     
T  8569535 aagtttttaacgtcagggactaaactgataacgaaagtgcacattcataaactactttgtatttaatcatgagtcaaagacctttgtgagagcgaggtga 8569436  T
Q  126 agagtca 132  Q
    |||||||    
T  8569435 agagtca 8569429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 154
Target Start/End: Original strand, 31075272 - 31075413
Alignment:
Q  12 tcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatg 111  Q
    ||||||||||| | || | ||||||| | ||||||||| ||||||||| |||||| ||| | |||||| ||||||||||||  |||| || | |||| ||    
T  31075272 tcatcagttaatataattatttaacgtcagtgactaaagtgataacgggagtacatattca-ggactattttgtatttaatgctgagccaagaacctttg 31075370  T
Q  112 tgacagtgaggtgcagagtcagagactaaattaatcatttact 154  Q
    | |||  ||||||||||||||||||| ||||| | ||||||||    
T  31075371 taacaacgaggtgcagagtcagagaccaaattgaccatttact 31075413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 35177539 - 35177405
Alignment:
Q  9 acatcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacct 108  Q
    ||||||||| |||||| |   |||||||| | | ||||||| ||||||||||||| || | | | |||||  |||||||||||||  |||||||||||||    
T  35177539 acatcatcacttaacagattattttaacgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatccggagtcagggacct 35177440  T
Q  109 atgtgacagtgaggtgcagagtcagagactaaatt 143  Q
    ||||||||| ||| |||||| | || |||||||||    
T  35177439 atgtgacagcgagctgcagaattagggactaaatt 35177405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 133
Target Start/End: Original strand, 35178803 - 35178907
Alignment:
Q  29 tttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcaga 128  Q
    ||||||||| | | ||||||| ||||||||||||| || | | | |||||  ||||||||||||| ||||||||||||| || |||||| || |||||||    
T  35178803 tttttaacgtcagggactaaagtgataacggaagtgcagaatcagggacttatttgtatttaatcctgagtcagggaccaatatgacagcgatgtgcaga 35178902  T
Q  129 gtcag 133  Q
    |||||    
T  35178903 gtcag 35178907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 154
Target Start/End: Complemental strand, 24199044 - 24198933
Alignment:
Q  43 gactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagagtcagagactaaat 142  Q
    ||||||| ||||||||||||| |||||| || || || ||||||||||||| ||| |||  ||||| |||||||| ||| || ||| |||||||| |||     
T  24199044 gactaaagtgataacggaagtgcacattcaatgattactttgtatttaatcctgaatcaaagacctttgtgacagcgagatgtagaatcagagacaaaaa 24198945  T
Q  143 taatcatttact 154  Q
    | ||||||||||    
T  24198944 tgatcatttact 24198933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 154
Target Start/End: Original strand, 28006576 - 28006718
Alignment:
Q  11 atcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctat 110  Q
    |||||||||||||| || | ||||||| | | |  |||| |||||||||||||||||||| |||||||| ||| ||||||||  ||| ||||| |||| |    
T  28006576 atcatcagttaacagaattatttaacgtcaggggttaaagtgataacggaagtacacattcaaggactactttatatttaattctgattcaggaaccttt 28006675  T
Q  111 gtgacagtgaggtgcagagtcagagactaaattaatcatttact 154  Q
    |  |||  || |||||||||||||||  ||| ||||||||||||    
T  28006676 gcaacatcgaagtgcagagtcagagaacaaa-taatcatttact 28006718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 154
Target Start/End: Original strand, 28063879 - 28064021
Alignment:
Q  11 atcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctat 110  Q
    |||||||||||||| || | ||||||| | | |  |||| |||||||||||||||||||| |||||||| ||| ||||||||  ||| ||||| |||| |    
T  28063879 atcatcagttaacagaattatttaacgtcaggggttaaagtgataacggaagtacacattcaaggactactttatatttaattctgattcaggaaccttt 28063978  T
Q  111 gtgacagtgaggtgcagagtcagagactaaattaatcatttact 154  Q
    |  |||  || |||||||||||||||  ||| ||||||||||||    
T  28063979 gcaacatcgaagtgcagagtcagagaacaaa-taatcatttact 28064021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 154
Target Start/End: Complemental strand, 31074138 - 31073993
Alignment:
Q  9 acatcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacct 108  Q
    ||||||||||||||||||| | |||||  || | ||||||| ||||||| ||||| |||||| |   |||| |||| ||||||||  ||||||| ||| |    
T  31074138 acatcatcagttaacaaaattatttaattccagagactaaagtgataacagaagtgcacattcagaaactactttgcatttaatccagagtcagagactt 31074039  T
Q  109 atgtgacagtgaggtgcagagtcagagactaaattaatcatttact 154  Q
     ||||||||  || ||||||||||| || |||| ||| ||||||||    
T  31074038 ttgtgacagcaagatgcagagtcagggattaaagtaaccatttact 31073993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 74 - 141
Target Start/End: Complemental strand, 41754077 - 41754010
Alignment:
Q  74 ggactagtttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagagtcagagactaaa 141  Q
    ||||| |||| ||||||||| |||||||||||||||||||||||  |||||||||  ||| |||||||    
T  41754077 ggacttgtttatatttaatcctgagtcagggacctatgtgacagcaaggtgcagaaccagggactaaa 41754010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 28619133 - 28619028
Alignment:
Q  9 acatcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacct 108  Q
    ||||||||| ||||||||| | ||||||| | | ||||||| |||||||| |||| || | | || || |  |||||||||||||||| |||||||||||    
T  28619133 acatcatcacttaacaaaattatttaacggccgagactaaagtgataacgaaagtgcagagtcaatgatttctttgtatttaatcatgggtcagggacct 28619034  T
Q  109 atgtga 114  Q
     |||||    
T  28619033 ttgtga 28619028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 130
Target Start/End: Complemental strand, 30134638 - 30134589
Alignment:
Q  81 tttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagagt 130  Q
    |||||||||||||||||||  ||||||| |||||||| ||||||||||||    
T  30134638 tttgtatttaatcatgagtaggggacctttgtgacagcgaggtgcagagt 30134589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 133
Target Start/End: Original strand, 41754845 - 41754898
Alignment:
Q  80 gtttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagagtcag 133  Q
    |||||||||||||| |||||||| || ||||||||||| |||||||||| ||||    
T  41754845 gtttgtatttaatcctgagtcagagatctatgtgacagcgaggtgcagaatcag 41754898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 112
Target Start/End: Original strand, 5738002 - 5738105
Alignment:
Q  9 acatcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacct 108  Q
    ||||||||| |||||| || | |||||||||   |||| || |||||||||||||||| | | ||  |||  ||||||||||||| ||||||| ||||||    
T  5738002 acatcatcacttaacagaattatttaacgccaaagactgaagtgataacggaagtacagagtcaataacttctttgtatttaatcttgagtcatggacct 5738101  T
Q  109 atgt 112  Q
    ||||    
T  5738102 atgt 5738105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 138
Target Start/End: Original strand, 5965455 - 5965550
Alignment:
Q  43 gactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagagtcagagact 138  Q
    ||||||| ||||||||||||| || | | || ||||  ||||||||||||| |||||||||||| | |||||||  |||||| | | |||||||||    
T  5965455 gactaaagtgataacggaagtgcagagtcaaagacttctttgtatttaatcctgagtcagggacatttgtgacaacgaggtgtaaaatcagagact 5965550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 12637771 - 12637836
Alignment:
Q  43 gactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacct 108  Q
    ||||||| ||||||||||||| |||||| | | |||| |||||||| |||| ||||| ||||||||    
T  12637771 gactaaagtgataacggaagtgcacattcaggaactactttgtattcaatcctgagttagggacct 12637836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 2e-21; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 38853896 - 38853775
Alignment:
Q  12 tcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatg 111  Q
    |||| |||||||| || | ||||||| | ||||||||| ||||||||||||| |||||||| |||||| ||||||||||||| |||||||| ||||| |     
T  38853896 tcatgagttaacataattatttaacgtcagtgactaaattgataacggaagtgcacatttagggactactttgtatttaatcctgagtcagagaccttta 38853797  T
Q  112 tgacagtgaggtgcagagtcag 133  Q
    ||||| ||| ||| ||||||||    
T  38853796 tgacaatgaagtgtagagtcag 38853775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 9 - 133
Target Start/End: Original strand, 31091506 - 31091630
Alignment:
Q  9 acatcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacct 108  Q
    ||||||||| |||||| |  ||||||||| | | ||||||| ||||||||||||| || | | | |||||  ||||||||||||| ||||||||||||||    
T  31091506 acatcatcacttaacatatttttttaacgtcagagactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcctgagtcagggacct 31091605  T
Q  109 atgtgacagtgaggtgcagagtcag 133  Q
    |||||||||  ||||||||||||||    
T  31091606 atgtgacagcaaggtgcagagtcag 31091630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 9 - 136
Target Start/End: Original strand, 15441950 - 15442077
Alignment:
Q  9 acatcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacct 108  Q
    ||||||||||||||||||| | |||||| |  | ||||||| ||||||   |||| |||||| |||||||| ||||||||||||| ||||||||| | ||    
T  15441950 acatcatcagttaacaaaattatttaacactagagactaaagtgataataaaagtgcacattcaaggactactttgtatttaatcctgagtcaggaatct 15442049  T
Q  109 atgtgacagtgaggtgcagagtcagaga 136  Q
     |||||||| ||||  ||||||||||||    
T  15442050 ttgtgacagcgaggaacagagtcagaga 15442077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 43 - 133
Target Start/End: Original strand, 32766252 - 32766342
Alignment:
Q  43 gactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagagtcag 133  Q
    ||||||| ||||||||||||| || | | | |||||  ||||||||||||| ||||||||||||||||||||||  |||||||||||||||    
T  32766252 gactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcctgagtcagggacctatgtgacaacgaggtgcagagtcag 32766342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 37607243 - 37607149
Alignment:
Q  12 tcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggac 106  Q
    ||||||||||||| || | | ||||| | | ||||||| ||||||||||||| |||||| ||||||||  |||||||||||||||||| ||||||    
T  37607243 tcatcagttaacataattatataacgtcagggactaaagtgataacggaagtgcacattaaaggactaccttgtatttaatcatgagttagggac 37607149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 140
Target Start/End: Original strand, 34582683 - 34582780
Alignment:
Q  43 gactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagagtcagagactaa 140  Q
    ||||||| ||||||||||||| |||||| | |||||| |||||||||||||  ||||||  ||||| ||| ||||  |||||||||||||| ||||||    
T  34582683 gactaaagtgataacggaagtgcacattcagggactactttgtatttaatcccgagtcaatgacctttgtaacagcaaggtgcagagtcagggactaa 34582780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 42 - 154
Target Start/End: Complemental strand, 8420124 - 8420012
Alignment:
Q  42 tgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagagtcagagactaaa 141  Q
    |||||||||||||||| ||||| |||||| | |||||| ||||||||||||| ||| |||||||| | |||||| | ||  ||||||||||| ||| |||    
T  8420124 tgactaaactgataacagaagtgcacattcagggactactttgtatttaatcttgactcagggacatttgtgaccgcgaaatgcagagtcagggaccaaa 8420025  T
Q  142 ttaatcatttact 154  Q
     | | ||||||||    
T  8420024 gtgaccatttact 8420012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 81 - 141
Target Start/End: Original strand, 17330281 - 17330341
Alignment:
Q  81 tttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagagtcagagactaaa 141  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||| |||  |||||||    
T  17330281 tttgtatttaatcctgagtcagggacctatgtgacagtgagctgcagaatcaaggactaaa 17330341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 154
Target Start/End: Original strand, 31443231 - 31443368
Alignment:
Q  16 cagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatgtgac 115  Q
    |||||||||||||||||||| | |   |||||||||||||||  |||| ||| || | |||||| |||||||||||| || |||||  ||| | ||||||    
T  31443231 cagttaacaaaagtttttaaagtcaaagactaaactgataacataagtgcac-ttcagggactactttgtatttaattataagtcaatgacttttgtgac 31443329  T
Q  116 agtgaggtgcagagtcagagactaaattaatcatttact 154  Q
    |  ||| ||||||||||||||||||| | | ||||||||    
T  31443330 aacgagatgcagagtcagagactaaagtgaccatttact 31443368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 132
Target Start/End: Complemental strand, 10729044 - 10728922
Alignment:
Q  12 tcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaagg---actagtttgtatttaatcatgagtcagggacct 108  Q
    ||||||||||||| |||||||||||| | | | ||||||||||||||||||| |||||  || |   |||| ||| |||||||||||| |||| ||||||    
T  10729044 tcatcagttaacataagtttttaacgtcaggggctaaactgataacggaagtgcacatccaatgactactactttatatttaatcatgcgtca-ggacct 10728946  T
Q  109 atgtgacagtgaggtgcagagtca 132  Q
     |||||||  |||||| |||||||    
T  10728945 ttgtgacaccgaggtgtagagtca 10728922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 133
Target Start/End: Original strand, 24459497 - 24459549
Alignment:
Q  81 tttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagagtcag 133  Q
    ||||||||||||| ||| ||||||||||||||||||| ||| |||||||||||    
T  24459497 tttgtatttaatcctgattcagggacctatgtgacagcgagatgcagagtcag 24459549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 132
Target Start/End: Original strand, 17466807 - 17466930
Alignment:
Q  9 acatcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacct 108  Q
    ||||||||| |||||| || | ||||||| |   ||||||| ||||||||||||| || | | |  ||||  ||||||||||||| |||||||| | | |    
T  17466807 acatcatcacttaacagaattatttaacgtcttagactaaagtgataacggaagtgcagagtcagagacttctttgtatttaatcctgagtcagcggctt 17466906  T
Q  109 atgtgacagtgaggtgcagagtca 132  Q
    ||||||||| ||||||||||||||    
T  17466907 atgtgacagcgaggtgcagagtca 17466930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 31 - 102
Target Start/End: Original strand, 26586296 - 26586367
Alignment:
Q  31 tttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcag 102  Q
    ||||||||| | ||||||| ||||||||||||| |||||| || ||||| ||| ||||||||| ||||||||    
T  26586296 tttaacgccagagactaaagtgataacggaagtgcacattcaaagactactttatatttaatcttgagtcag 26586367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 12 - 143
Target Start/End: Complemental strand, 31090305 - 31090174
Alignment:
Q  12 tcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatg 111  Q
    |||||| |||||| |  ||||||||| | | ||||||| | ||||||||||| || | | |  ||||  ||| ||||||||| ||||||| |||||||||    
T  31090305 tcatcacttaacatatttttttaacgtcagggactaaaatcataacggaagtgcagagtcagagacttatttatatttaatcctgagtcaaggacctatg 31090206  T
Q  112 tgacagtgaggtgcagagtcagagactaaatt 143  Q
    |||||| ||| |||||| |||| |||||||||    
T  31090205 tgacagcgagctgcagaatcagggactaaatt 31090174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 45 - 92
Target Start/End: Complemental strand, 31442441 - 31442394
Alignment:
Q  45 ctaaactgataacggaagtacacatttaaggactagtttgtatttaat 92  Q
    ||||||||||||||||||| |||||||| |||||| ||||||||||||    
T  31442441 ctaaactgataacggaagtgcacatttatggactactttgtatttaat 31442394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 111
Target Start/End: Complemental strand, 14704130 - 14704048
Alignment:
Q  29 tttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatg 111  Q
    ||||||||| | | ||||||| ||||||||||||| || | | | |||||  ||||||||||||| |||||||||||||||||    
T  14704130 tttttaacgtcagggactaaagtgataacggaagtgcagagtgagggacttatttgtatttaatcctgagtcagggacctatg 14704048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 18675228 - 18675122
Alignment:
Q  9 acatcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacct 108  Q
    |||| |||||||||||||| | ||| |||||   ||||||| |||||| |||||| |||||  |||||||| ||| ||||||||  |||||||  |||||    
T  18675228 acattatcagttaacaaaattatttgacgccaaagactaaagtgataatggaagtgcacatccaaggactattttatatttaattctgagtcaatgacct 18675129  T
Q  109 atgtgac 115  Q
    |||||||    
T  18675128 atgtgac 18675122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 9616024 - 9616113
Alignment:
Q  19 ttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacct 108  Q
    |||||| || ||||||||| ||| ||||||| |||||||| |||| | |||| | |||||| |||||||||||| |||||| ||| ||||    
T  9616024 ttaacagaaatttttaacgtcggagactaaattgataacgaaagtgcgcattcagggactactttgtatttaattatgagttaggaacct 9616113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 132
Target Start/End: Original strand, 12746214 - 12746303
Alignment:
Q  43 gactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagagtca 132  Q
    ||||||| ||||||||||||  |||||| | | |||| ||||||||||||| ||||||||| |||| |  ||| | ||||||||||||||    
T  12746214 gactaaagtgataacggaagggcacattcaggaactactttgtatttaatcctgagtcaggaacctttaagactgcgaggtgcagagtca 12746303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 141
Target Start/End: Original strand, 34037652 - 34037784
Alignment:
Q  9 acatcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacct 108  Q
    ||||||||| |||||| || ||||||||| |||  |||||| ||||||| ||||| || | | |  ||||  ||||||||||||| ||||| | ||||||    
T  34037652 acatcatcacttaacataattttttaacggcgggaactaaagtgataacagaagtgcagagtcatagacttatttgtatttaatcctgagttatggacct 34037751  T
Q  109 atgtgacagtgaggtgcagagtcagagactaaa 141  Q
     | ||||||  |||||||||||||  |||||||    
T  34037752 ttatgacagcaaggtgcagagtcaaggactaaa 34037784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 133
Target Start/End: Complemental strand, 39015077 - 39015025
Alignment:
Q  81 tttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagagtcag 133  Q
    ||||||||||||| ||||||| ||| ||||||| ||| |||||||||||||||    
T  39015077 tttgtatttaatcctgagtcaaggatctatgtggcagcgaggtgcagagtcag 39015025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 99
Target Start/End: Original strand, 12004976 - 12005066
Alignment:
Q  9 acatcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagt 99  Q
    |||||||| | ||||| ||||||| || ||  | ||||| |||||||| |||||| || ||| |||||||| ||| |||||||||||||||    
T  12004976 acatcatccgctaacagaagttttcaatgctagagactatactgataatggaagtgcatattcaaggactattttatatttaatcatgagt 12005066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 154
Target Start/End: Complemental strand, 2910172 - 2910099
Alignment:
Q  81 tttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagagtcagagactaaattaatcatttact 154  Q
    |||||||||||||  |||||||||| ||||||||||| ||| |||| | ||| |||||||| | || |||||||    
T  2910172 tttgtatttaatcccgagtcagggatctatgtgacagcgagctgcaaaatcaaagactaaagtgattatttact 2910099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 133
Target Start/End: Complemental strand, 11985828 - 11985711
Alignment:
Q  16 cagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatgtgac 115  Q
    ||||||||| ||| ||||||||   | |||||||||||||||| || | ||| || |  ||||| ||||||||||||| |||||||| ||||| | | ||    
T  11985828 cagttaacagaagcttttaacgttagggactaaactgataacgaaaatgcaccttcagagactactttgtatttaatcctgagtcagagacctttataac 11985729  T
Q  116 agtgaggtgcagagtcag 133  Q
    || ||||||  |||||||    
T  11985728 agcgaggtgtggagtcag 11985711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 33439382 - 33439261
Alignment:
Q  12 tcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatg 111  Q
    ||||||||||||| || ||||||| | | |  |||||| |||||| ||| || |||||| || ||||| ||| ||||||||||||| ||| | |||| |     
T  33439382 tcatcagttaacataaatttttaatgtcagaaactaaattgataatggaggtgcacattaaaagactactttatatttaatcatgactcaagtaccttta 33439283  T
Q  112 tgacagtgaggtgcagagtcag 133  Q
    |||||  || ||||||||||||    
T  33439282 tgacaacgatgtgcagagtcag 33439261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 38854930 - 38854841
Alignment:
Q  12 tcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtca 101  Q
    |||| |||||||| || | ||||||  | ||||||||| |||||||  |||| |||||||| | |||| ||||||||||||| |||||||    
T  38854930 tcatgagttaacataattatttaacttcagtgactaaattgataacataagtgcacatttaggaactactttgtatttaatcctgagtca 38854841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 6e-21; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 9 - 141
Target Start/End: Complemental strand, 2464813 - 2464681
Alignment:
Q  9 acatcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacct 108  Q
    ||||||||| ||||||||  ||||||||| | | ||||||| |||||||| |||| || | ||| |||||  ||||||||||||||||||||| ||||||    
T  2464813 acatcatcacttaacaaatttttttaacgtcagagactaaagtgataacgtaagtgcagagttagggacttatttgtatttaatcatgagtcatggacct 2464714  T
Q  109 atgtgacagtgaggtgcagagtcagagactaaa 141  Q
    || |||||| ||| |||||| |||| |||||||    
T  2464713 atatgacagcgagctgcagaatcagtgactaaa 2464681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 11 - 126
Target Start/End: Original strand, 546017 - 546132
Alignment:
Q  11 atcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctat 110  Q
    ||||||| ||||||||  ||||||||| | | ||||||| ||||||||||||| || | | |||||||  | ||||||||||| ||||||||||||||||    
T  546017 atcatcacttaacaaatttttttaacgtcagggactaaagtgataacggaagtgcagagtcaaggacttatctgtatttaatcctgagtcagggacctat 546116  T
Q  111 gtgacagtgaggtgca 126  Q
    ||||||| ||| ||||    
T  546117 gtgacagcgagctgca 546132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 85 - 154
Target Start/End: Complemental strand, 18400258 - 18400189
Alignment:
Q  85 tatttaatcatgagtcagggacctatgtgacagtgaggtgcagagtcagagactaaattaatcatttact 154  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||| | | ||||||||    
T  18400258 tatttaatcctgagtcaaggacctatgtgacagtgaggtgcagagtcagggactaaagtgaccatttact 18400189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 9 - 134
Target Start/End: Complemental strand, 25590574 - 25590450
Alignment:
Q  9 acatcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacct 108  Q
    ||||||||| ||||||||| ||||||||| | | || |||| ||||||| ||||| || | | |  ||||  |||||||||||||  |||||||||||||    
T  25590574 acatcatcacttaacaaaattttttaacgtcagagattaaagtgataacagaagtgcagaatcagagacttatttgtatttaatcc-gagtcagggacct 25590476  T
Q  109 atgtgacagtgaggtgcagagtcaga 134  Q
    ||||||||| ||||||||||||||||    
T  25590475 atgtgacagcgaggtgcagagtcaga 25590450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 9 - 133
Target Start/End: Original strand, 28591092 - 28591217
Alignment:
Q  9 acatcatcagttaacaaaagtttt-taacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacc 107  Q
    ||||||||| |||||| |  |||| ||||| ||| ||||||| |||||| |||||| || | | | ||| |  ||||||||||||| |||||||||||||    
T  28591092 acatcatcacttaacagattttttgtaacgtcggggactaaagtgataaaggaagtgcagagtcagggatttatttgtatttaatcctgagtcagggacc 28591191  T
Q  108 tatgtgacagtgaggtgcagagtcag 133  Q
    |||||||||| |||||||||||||||    
T  28591192 tatgtgacagcgaggtgcagagtcag 28591217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 32640432 - 32640311
Alignment:
Q  9 acatcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacct 108  Q
    ||||||||| ||||||||  ||||||||| | | ||||||| ||||||| |||||  | | ||| |||||  ||||||||||||| ||||| | || |||    
T  32640432 acatcatcacttaacaaatttttttaacgtcagagactaaagtgataacagaagtttagagttagggacttatttgtatttaatcctgagttatggtcct 32640333  T
Q  109 atgtgacagtgaggtgcagagt 130  Q
    ||||||||||||||||||||||    
T  32640332 atgtgacagtgaggtgcagagt 32640311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 9 - 141
Target Start/End: Complemental strand, 21069433 - 21069301
Alignment:
Q  9 acatcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacct 108  Q
    ||||||||| ||||||||| ||||||||| |    | |||| ||| ||| ||||| || | | |||||||  ||||||||||||| |||||||| |||||    
T  21069433 acatcatcacttaacaaaattttttaacggcatatattaaagtgaaaacagaagtgcagagtcaaggacttatttgtatttaatcctgagtcagagacct 21069334  T
Q  109 atgtgacagtgaggtgcagagtcagagactaaa 141  Q
     |||||||  |||||||||||||||||||||||    
T  21069333 ctgtgacaacgaggtgcagagtcagagactaaa 21069301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 132
Target Start/End: Original strand, 12445405 - 12445518
Alignment:
Q  18 gttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatgtgacag 117  Q
    |||||||||||||||||||||||| ||||||  ||||||||||||| |||| || ||||||| ||| ||||||||   || |||| ||||| ||| | ||    
T  12445405 gttaacaaaagtttttaacgccggagactaaggtgataacggaagtgcaca-ttcaggactactttatatttaattccgaatcagagacctttgtaagag 12445503  T
Q  118 tgaggtgcagagtca 132  Q
     ||||||||||||||    
T  12445504 cgaggtgcagagtca 12445518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 19271483 - 19271397
Alignment:
Q  12 tcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgag 98  Q
    |||| |||||||| || ||||||||| |   ||||||||||||||||||||| |||||| |||||||| ||| ||||||||||||||    
T  19271483 tcattagttaacataaatttttaacgtcatggactaaactgataacggaagtgcacattaaaggactactttatatttaatcatgag 19271397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 43099203 - 43099122
Alignment:
Q  12 tcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatc 93  Q
    ||||||||||||||||||||||||||   | ||||||||||||||||| | |||||||  || ||||| |||||||||||||    
T  43099203 tcatcagttaacaaaagtttttaacgttagggactaaactgataacggtactacacatgcaaagactattttgtatttaatc 43099122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 137
Target Start/End: Original strand, 2466773 - 2466881
Alignment:
Q  29 tttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcaga 128  Q
    ||||||||| | | ||||||| ||||||||||||| || | ||| |||||  ||| ||||||||| ||| |||  ||||||||||| || ||||||||||    
T  2466773 tttttaacgtcagggactaaagtgataacggaagtgcagagttagggacttatttttatttaatcctgaatcaatgacctatgtgatagcgaggtgcaga 2466872  T
Q  129 gtcagagac 137  Q
    |||||||||    
T  2466873 gtcagagac 2466881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 117
Target Start/End: Complemental strand, 4593005 - 4592897
Alignment:
Q  9 acatcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacct 108  Q
    ||||||||| |||||| |  ||||||||| | | ||||||| ||||||||||||| || | | | |||||  ||||||||||||| |||||||||||| |    
T  4593005 acatcatcacttaacagatttttttaacgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcttgagtcagggactt 4592906  T
Q  109 atgtgacag 117  Q
    |||||||||    
T  4592905 atgtgacag 4592897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 133
Target Start/End: Original strand, 9538062 - 9538152
Alignment:
Q  43 gactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagagtcag 133  Q
    ||||||| ||||||||||||| |||| | |  ||||  ||||||||||||| |||||||||||||||| |||||  ||| |||||||||||    
T  9538062 gactaaaatgataacggaagtgcacaatcagagacttctttgtatttaatcctgagtcagggacctatatgacaacgagatgcagagtcag 9538152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 141
Target Start/End: Complemental strand, 8074560 - 8074463
Alignment:
Q  44 actaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagagtcagagactaaa 141  Q
    |||||| ||||||||||||| || | | | |||||  ||||||||||||| |||||||||||| |||||||||| ||| |||| | |||| |||||||    
T  8074560 actaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcctgagtcagggacttatgtgacagcgagctgcataatcagggactaaa 8074463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 141
Target Start/End: Complemental strand, 9537166 - 9537035
Alignment:
Q  9 acatcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacct 108  Q
    ||||||||| ||| || || | ||||||| | ||||||||| |||||| |||||| |||| | | | |||  ||||||||||||  | |||||| |||||    
T  9537166 acatcatcacttaccataattatttaacgtcagtgactaaagtgataatggaagtgcacagtcatg-acttctttgtatttaattctaagtcagagacct 9537068  T
Q  109 atgtgacagtgaggtgcagagtcagagactaaa 141  Q
    ||||||||| |||||||||||| || |||||||    
T  9537067 atgtgacagcgaggtgcagagtgagggactaaa 9537035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 130
Target Start/End: Original strand, 14891199 - 14891243
Alignment:
Q  86 atttaatcatgagtcagggacctatgtgacagtgaggtgcagagt 130  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||    
T  14891199 atttaatcatgagtcagagacctatgtgacagcgaggtgcagagt 14891243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 81 - 132
Target Start/End: Complemental strand, 16611800 - 16611749
Alignment:
Q  81 tttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagagtca 132  Q
    ||||||||||||| |||||||| |||||||||||||| |||||| |||||||    
T  16611800 tttgtatttaatcctgagtcagagacctatgtgacagcgaggtgtagagtca 16611749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 81 - 132
Target Start/End: Complemental strand, 19183022 - 19182971
Alignment:
Q  81 tttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagagtca 132  Q
    ||||||||||||| |||||||| |||||||||||||| |||||||| |||||    
T  19183022 tttgtatttaatcctgagtcagagacctatgtgacagcgaggtgcaaagtca 19182971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 141
Target Start/End: Original strand, 40612712 - 40612770
Alignment:
Q  83 tgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagagtcagagactaaa 141  Q
    ||||||||||| ||||||||||||||| ||||||||||| |||| | |||| |||||||    
T  40612712 tgtatttaatcctgagtcagggacctacgtgacagtgagctgcaaaatcagggactaaa 40612770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 26327054 - 26327175
Alignment:
Q  12 tcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatg 111  Q
    ||||||||||||| || ||||||||| |   |||||||||||| |||||||| |||||  ||||  || ||| ||||||||| |||||||||  ||  |     
T  26327054 tcatcagttaacagaaatttttaacgtcaaggactaaactgattacggaagtgcacatccaagggttattttatatttaatcctgagtcaggagccctta 26327153  T
Q  112 tgacagtgaggtgcagagtcag 133  Q
    |||||  |||||||||||||||    
T  26327154 tgacaacgaggtgcagagtcag 26327175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 154
Target Start/End: Complemental strand, 18004681 - 18004637
Alignment:
Q  110 tgtgacagtgaggtgcagagtcagagactaaattaatcatttact 154  Q
    |||||||||||||||||||||||| ||||||| |||| |||||||    
T  18004681 tgtgacagtgaggtgcagagtcagggactaaagtaattatttact 18004637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 102
Target Start/End: Original strand, 35538317 - 35538373
Alignment:
Q  46 taaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcag 102  Q
    |||| ||||||||||||| |||||| ||| |||| |||||||||||||| |||||||    
T  35538317 taaagtgataacggaagtgcacattgaagaactactttgtatttaatcacgagtcag 35538373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 117
Target Start/End: Original strand, 13651173 - 13651207
Alignment:
Q  83 tgtatttaatcatgagtcagggacctatgtgacag 117  Q
    ||||||||||| |||||||||||||||||||||||    
T  13651173 tgtatttaatcctgagtcagggacctatgtgacag 13651207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 129
Target Start/End: Original strand, 19186265 - 19186319
Alignment:
Q  75 gactagtttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagag 129  Q
    |||| |||||||||||||| | ||||||||||||||||||| | ||| |||||||    
T  19186265 gacttgtttgtatttaatcctaagtcagggacctatgtgactgggagatgcagag 19186319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 6e-21; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 9 - 141
Target Start/End: Original strand, 32665749 - 32665881
Alignment:
Q  9 acatcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacct 108  Q
    ||||||||| |||||| |  ||| ||||||| | ||||||| ||||||||||||| || | | || ||||  |||||||||||||||||||||| |||||    
T  32665749 acatcatcacttaacagatttttgtaacgccagggactaaagtgataacggaagtgcagagtcaaagacttatttgtatttaatcatgagtcagagacct 32665848  T
Q  109 atgtgacagtgaggtgcagagtcagagactaaa 141  Q
    ||||||||| ||| |||||| |||| |||||||    
T  32665849 atgtgacagcgagctgcagaatcagggactaaa 32665881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 81 - 141
Target Start/End: Complemental strand, 5782486 - 5782426
Alignment:
Q  81 tttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagagtcagagactaaa 141  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||    
T  5782486 tttgtatttaatcatgagtcagagacctatgtgacagcgaggtgcagagtcagggactaaa 5782426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 12 - 132
Target Start/End: Original strand, 11060766 - 11060886
Alignment:
Q  12 tcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatg 111  Q
    ||||||||||||| || | ||||||| ||| ||||||| |||||||| |||| | |||| | |||||| ||||||||||||  ||||||| |||||| ||    
T  11060766 tcatcagttaacagaattatttaacgtcggggactaaagtgataacgaaagtgcccattcagggactattttgtatttaattttgagtcatggacctttg 11060865  T
Q  112 tgacagtgaggtgcagagtca 132  Q
    |||||| |||||||| |||||    
T  11060866 tgacagcgaggtgcatagtca 11060886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 12 - 102
Target Start/End: Original strand, 1001884 - 1001974
Alignment:
Q  12 tcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcag 102  Q
    |||||||||||||||| |||||||||   | |||||||||||||||||||||||||||| |  ||||| ||| |||||||| |||||||||    
T  1001884 tcatcagttaacaaaattttttaacgttagagactaaactgataacggaagtacacattcatagactaatttttatttaattatgagtcag 1001974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 29 - 133
Target Start/End: Original strand, 7945553 - 7945657
Alignment:
Q  29 tttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcaga 128  Q
    ||||||||| | | ||||||| ||||||||||||| || | | |  ||||  ||||||||||||| ||||||||| ||||||||||||| ||||||||||    
T  7945553 tttttaacgtcagggactaaagtgataacggaagtgcatagtcagagacttatttgtatttaatcctgagtcaggaacctatgtgacagcgaggtgcaga 7945652  T
Q  129 gtcag 133  Q
    |||||    
T  7945653 gtcag 7945657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 108
Target Start/End: Complemental strand, 39725483 - 39725384
Alignment:
Q  9 acatcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacct 108  Q
    ||||||||||| ||||||||||||||||| |   ||||||||| ||||||||||| || ||| ||  |||| ||||||||||||||||||| ||| ||||    
T  39725483 acatcatcagtcaacaaaagtttttaacgtcaaagactaaactaataacggaagtgcatattcaataactattttgtatttaatcatgagttaggaacct 39725384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 116
Target Start/End: Complemental strand, 8975301 - 8975196
Alignment:
Q  11 atcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctat 110  Q
    ||||||| ||||||||| | |||||||||   ||||||| |||||||| |||| || ||| | |||||| ||| ||||||||| |||||||||||||| |    
T  8975301 atcatcaattaacaaaattatttaacgccaaagactaaagtgataacgaaagtgcatattcatggactactttatatttaatcttgagtcagggaccttt 8975202  T
Q  111 gtgaca 116  Q
    ||||||    
T  8975201 gtgaca 8975196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 154
Target Start/End: Complemental strand, 1001264 - 1001153
Alignment:
Q  43 gactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagagtcagagactaaat 142  Q
    ||||||||||||||| ||||| |||||| |  ||||| |||||||||||||  |||||| |||||| |||| ||  |||||||| |||||  |||||||     
T  1001264 gactaaactgataacagaagtgcacattcagagactactttgtatttaatcccgagtcatggacctttgtggcaacgaggtgcaaagtcatggactaaag 1001165  T
Q  143 taatcatttact 154  Q
    | ||||||||||    
T  1001164 ttatcatttact 1001153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 136
Target Start/End: Original strand, 10333165 - 10333292
Alignment:
Q  9 acatcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacct 108  Q
    ||||||||| |||||| |  ||||||||||  | ||||||| ||||||||||||| || | | |  ||||  ||||||||||||| |||||||| |||||    
T  10333165 acatcatcacttaacagatttttttaacgctagagactaaagtgataacggaagtgcagagtcagagacttatttgtatttaatcttgagtcagagacct 10333264  T
Q  109 atgtgacagtgaggtgcagagtcagaga 136  Q
    |||| |||| ||| |||||| |||||||    
T  10333265 atgtaacagcgagctgcagaatcagaga 10333292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 141
Target Start/End: Complemental strand, 6612563 - 6612431
Alignment:
Q  9 acatcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacct 108  Q
    |||| |||| ||||||||| | ||||||| | | || |||| |||||| |||||| || | | |  |||| ||||||||||||||||||||||| ||| |    
T  6612563 acataatcacttaacaaaattatttaacgtcagggattaaagtgataatggaagtgcagagtcagagacttgtttgtatttaatcatgagtcagagacat 6612464  T
Q  109 atgtgacagtgaggtgcagagtcagagactaaa 141  Q
     | | |||| ||||||||||||||| |||||||    
T  6612463 ttataacagcgaggtgcagagtcagggactaaa 6612431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 139
Target Start/End: Complemental strand, 7944265 - 7944169
Alignment:
Q  43 gactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagagtcagagacta 139  Q
    ||||||| |||||||| |||| || | | |||||||  ||||||||||||  ||||||||||||||||||||||| ||| |||| | |||| |||||    
T  7944265 gactaaattgataacgaaagtgcagagtcaaggacttatttgtatttaattttgagtcagggacctatgtgacagcgagttgcaaaatcagggacta 7944169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 141
Target Start/End: Complemental strand, 9339790 - 9339658
Alignment:
Q  9 acatcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacct 108  Q
    ||||||||| |||||| |  ||||||||| | | ||||||| ||||||||||||| || | |   ||| |  ||||||||||||| ||||||||||||||    
T  9339790 acatcatcacttaacagatttttttaacgtcagggactaaagtgataacggaagtgcagagtcggggatttatttgtatttaatcctgagtcagggacct 9339691  T
Q  109 atgtgacagtgaggtgcagagtcagagactaaa 141  Q
    |||| |||  ||| |||||| |||| |||||||    
T  9339690 atgtaacaacgagctgcagaatcagggactaaa 9339658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 11830050 - 11829946
Alignment:
Q  12 tcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatg 111  Q
    ||||||||||||| |||||||||||| |   | ||||||| ||||||||| | || ||  |||||||| ||||||||||||| ||||| || ||||| ||    
T  11830050 tcatcagttaacataagtttttaacgtcaaagcctaaactaataacggaaatgcatatacaaggactaatttgtatttaatcttgagttagtgacctttg 11829951  T
Q  112 tgaca 116  Q
    |||||    
T  11829950 tgaca 11829946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 136
Target Start/End: Complemental strand, 1407784 - 1407657
Alignment:
Q  9 acatcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacct 108  Q
    ||||||||||||||||||| | ||||||| | | ||||||| |||||||  |||| || ||| |   |||| ||| |||||| |||| ||||| ||||||    
T  1407784 acatcatcagttaacaaaattatttaacgtcagggactaaagtgataacataagtgcatattcagaaactactttatatttagtcataagtcatggacct 1407685  T
Q  109 atgtgacagtgaggtgcagagtcagaga 136  Q
     |||||||   |||||||||||||||||    
T  1407684 ttgtgacaacaaggtgcagagtcagaga 1407657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 81 - 128
Target Start/End: Original strand, 9341076 - 9341123
Alignment:
Q  81 tttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcaga 128  Q
    ||||||||||||| |||||||||||||||||||| |||||| ||||||    
T  9341076 tttgtatttaatcctgagtcagggacctatgtgatagtgagatgcaga 9341123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 141
Target Start/End: Complemental strand, 10333096 - 10332998
Alignment:
Q  43 gactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagagtcagagactaaa 141  Q
    ||||||| ||||||||||||| || | | | |||||  ||| ||||||||| ||| ||| ||||||||||||||  |||||||| |||||| |||||||    
T  10333096 gactaaaatgataacggaagtgcagagtaagggacttatttatatttaatcctgaatcaaggacctatgtgacaacgaggtgcaaagtcagggactaaa 10332998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 102
Target Start/End: Complemental strand, 26518250 - 26518160
Alignment:
Q  12 tcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcag 102  Q
    ||||| ||||||| |||||||| ||||  | ||||||| ||||||||||| | |||||| | | |||| ||||||||||||| ||||||||    
T  26518250 tcatcggttaacataagttttttacgctagagactaaattgataacggaactgcacattcatgaactactttgtatttaatcttgagtcag 26518160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 102
Target Start/End: Original strand, 50107185 - 50107275
Alignment:
Q  12 tcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcag 102  Q
    ||||||||||||| || | |||||||||   ||||||| ||||||||||||| |||||| |  ||||| ||||||||||||| ||| ||||    
T  50107185 tcatcagttaacataattatttaacgccaaggactaaagtgataacggaagtgcacattcagagactattttgtatttaatcctgaatcag 50107275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 141
Target Start/End: Complemental strand, 22856824 - 22856692
Alignment:
Q  9 acatcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacct 108  Q
    |||| |||| |||||| || | ||||||| ||| ||||||| ||||||||||||| || | |||  ||||  ||||||||||||| ||||||| | | ||    
T  22856824 acataatcacttaacataattatttaacgtcggagactaaagtgataacggaagtgcagagttagagacttctttgtatttaatcctgagtcaagaatct 22856725  T
Q  109 atgtgacagtgaggtgcagagtcagagactaaa 141  Q
     ||| |||  | ||||||||||||| |||||||    
T  22856724 ttgtaacaacgtggtgcagagtcagtgactaaa 22856692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 108
Target Start/End: Original strand, 26519084 - 26519180
Alignment:
Q  12 tcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacct 108  Q
    |||||| || ||| |||||||||||||| | || ||||||||||||  |||| |||||| || ||||| ||||||||||| |  |||| ||||||||    
T  26519084 tcatcaattgacataagtttttaacgccagagattaaactgataacaaaagtgcacattcaaagactactttgtatttaacccggagttagggacct 26519180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 52440614 - 52440666
Alignment:
Q  85 tatttaatcatgagtcagggacctatgtgacagtgaggtgcagagtcagagac 137  Q
    ||||||||| ||| ||||||||||||||||||| || ||||| ||||||||||    
T  52440614 tatttaatcctgactcagggacctatgtgacagcgatgtgcaaagtcagagac 52440666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 126
Target Start/End: Original strand, 5783110 - 5783205
Alignment:
Q  31 tttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatgtgacagtgaggtgca 126  Q
    ||||||||  ||||||||| ||||||||||||| || | | | |||||  ||||||||||||  ||||||  ||| ||||||||||| ||||||||    
T  5783110 tttaacgctagtgactaaagtgataacggaagtgcagagtcatggacttctttgtatttaattctgagtcgaggatctatgtgacagcgaggtgca 5783205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 134
Target Start/End: Original strand, 534600 - 534661
Alignment:
Q  73 aggactagtttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagagtcaga 134  Q
    |||||| |||||||||||||| ||| ||| | |||||||| |||| ||||||||||| ||||    
T  534600 aggacttgtttgtatttaatcctgaatcaagaacctatgtaacagcgaggtgcagagccaga 534661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 408 - 449
Target Start/End: Complemental strand, 7528163 - 7528122
Alignment:
Q  408 gtttggtttggtttatgaaccatgcacactcctagttataac 449  Q
    ||||||||||||| ||||| ||||||||| ||||||||||||    
T  7528163 gtttggtttggttcatgaatcatgcacacccctagttataac 7528122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 51; Significance: 9e-20; HSPs: 2)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 79217 - 79083
Alignment:
Q  9 acatcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacct 108  Q
    ||||||||| ||||||||| | ||||||| |   ||||||| ||||| |||| || || | | |||||||  ||| ||||||||||||||||| ||||||    
T  79217 acatcatcacttaacaaaattatttaacgtcaaagactaaagtgatatcggaggtgcaaagtcaaggacttctttttatttaatcatgagtcaaggacct 79118  T
Q  109 atgtgacagtgaggtgcagagtcagagactaaatt 143  Q
    ||||||||| |||||||||||||||  ||||||||    
T  79117 atgtgacagcgaggtgcagagtcaggaactaaatt 79083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 72 - 141
Target Start/End: Original strand, 74355 - 74424
Alignment:
Q  72 aaggactagtttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagagtcagagactaaa 141  Q
    |||||||  ||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||    
T  74355 aaggacttctttgtatttaatcatgagttagggacctatgtgacagtgagttgcagagtcagggactaaa 74424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 29 - 141
Target Start/End: Complemental strand, 17700642 - 17700530
Alignment:
Q  29 tttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcaga 128  Q
    ||||||||| | | ||||||| ||||||||||||| || | | | |||||  ||||||||||||| ||||||||| ||||||||||||  ||||||||||    
T  17700642 tttttaacgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcctgagtcaggaacctatgtgacaacgaggtgcaga 17700543  T
Q  129 gtcagagactaaa 141  Q
    |||| ||||||||    
T  17700542 gtcaaagactaaa 17700530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 29 - 141
Target Start/End: Original strand, 17701918 - 17702030
Alignment:
Q  29 tttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcaga 128  Q
    ||||||||| | | ||||||| ||||||||||||| || | | | |||||  ||||||||||||| |||||||||||||||| |||||| ||| ||||||    
T  17701918 tttttaacgtcagggactaaagtgataacggaagtgcagagtcagggacttatttgtatttaatcttgagtcagggacctatatgacagcgagctgcaga 17702017  T
Q  129 gtcagagactaaa 141  Q
     ||||||||||||    
T  17702018 atcagagactaaa 17702030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 39497348 - 39497244
Alignment:
Q  12 tcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatg 111  Q
    |||||||||||||| ||||||||||| | | || ||||||||||||| |||| |||||| ||  |||| ||||||||||||| ||||||| |||||| ||    
T  39497348 tcatcagttaacaagagtttttaacgacagagattaaactgataacgaaagtgcacattcaataactattttgtatttaatcctgagtcatggacctttg 39497249  T
Q  112 tgaca 116  Q
    |||||    
T  39497248 tgaca 39497244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 9 - 141
Target Start/End: Complemental strand, 52317123 - 52316991
Alignment:
Q  9 acatcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacct 108  Q
    ||||||||| |||||| |  ||||||||| |   ||||||| |||||||||| || || | |||| ||||  |||||||||||||||||||||| |||||    
T  52317123 acatcatcacttaacagatttttttaacgtcatggactaaaatgataacggaggtgcagagttaaagacttatttgtatttaatcatgagtcagagacct 52317024  T
Q  109 atgtgacagtgaggtgcagagtcagagactaaa 141  Q
    || |||||| ||| |||||| ||||||||||||    
T  52317023 atatgacagcgagctgcagaatcagagactaaa 52316991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 43 - 151
Target Start/End: Complemental strand, 19114643 - 19114535
Alignment:
Q  43 gactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagagtcagagactaaat 142  Q
    ||||||| ||||||||||||| || | |||  ||||  ||||||||||||| |||||||||||||| |||||||  || |||||||||||| |||||||     
T  19114643 gactaaagtgataacggaagtgcaaagttagtgacttctttgtatttaatcttgagtcagggacctctgtgacaacgaagtgcagagtcagggactaaag 19114544  T
Q  143 taatcattt 151  Q
    | |||||||    
T  19114543 tgatcattt 19114535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 9 - 117
Target Start/End: Original strand, 53959079 - 53959187
Alignment:
Q  9 acatcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacct 108  Q
    ||||||||| ||||||||  ||||||||| | | ||||||| ||||||||||||| || | | | | |||  |||||||||||||||||||||| |||||    
T  53959079 acatcatcacttaacaaatttttttaacgtcagagactaaagtgataacggaagtgcagagtcatgaacttatttgtatttaatcatgagtcagagacct 53959178  T
Q  109 atgtgacag 117  Q
    |||||||||    
T  53959179 atgtgacag 53959187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 154
Target Start/End: Complemental strand, 40206023 - 40205880
Alignment:
Q  12 tcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtc-agggacctat 110  Q
    |||| |||||||| || |||||||||||  |||||||||||||||||||||| |||||| |  ||||| ||||| ||||||| |||||| || ||||| |    
T  40206023 tcattagttaacataattttttaacgccaatgactaaactgataacggaagtgcacattcagagactactttgtttttaatcgtgagtcaagagaccttt 40205924  T
Q  111 gtgacagtgaggtgcagagtcagagactaaattaatcatttact 154  Q
     |||||| ||| | ||||||| | ||||||| | | ||||||||    
T  40205923 atgacagcgagctacagagtccgggactaaaatgaccatttact 40205880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 43 - 141
Target Start/End: Original strand, 40206951 - 40207049
Alignment:
Q  43 gactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagagtcagagactaaa 141  Q
    ||||||||||||||||||| | |||||| |||||||| ||| || |||||||||||||| ||| || ||||| |  || ||||||||||||| ||||||    
T  40206951 gactaaactgataacggaaatgcacattcaaggactaatttatacttaatcatgagtcaaggaactttgtgataacgatgtgcagagtcagatactaaa 40207049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 81 - 133
Target Start/End: Complemental strand, 19331180 - 19331128
Alignment:
Q  81 tttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagagtcag 133  Q
    ||||||||||||| |||||||||||||||||||||||  ||||||||||||||    
T  19331180 tttgtatttaatcctgagtcagggacctatgtgacagcaaggtgcagagtcag 19331128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 141
Target Start/End: Complemental strand, 20464213 - 20464081
Alignment:
Q  9 acatcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacct 108  Q
    ||||||||| |||||| |  | ||||||| ||  ||||||| ||||||| ||||| || | | | |||||  |||||||||||||||||| |||||||||    
T  20464213 acatcatcacttaacagagttatttaacgtcgtggactaaagtgataacagaagtgcagagtcagggacttctttgtatttaatcatgagccagggacct 20464114  T
Q  109 atgtgacagtgaggtgcagagtcagagactaaa 141  Q
     |||||||  ||||||||||||| | |||||||    
T  20464113 ttgtgacaacgaggtgcagagtcggggactaaa 20464081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 52318368 - 52318424
Alignment:
Q  81 tttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagagtcagagac 137  Q
    ||||||||||||| ||||||||||| ||||||||||| || ||||||||||||||||    
T  52318368 tttgtatttaatcctgagtcagggatctatgtgacagcgaagtgcagagtcagagac 52318424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 141
Target Start/End: Complemental strand, 2591705 - 2591639
Alignment:
Q  75 gactagtttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagagtcagagactaaa 141  Q
    |||| |||||||||||||| |||||||||||||||||||||||  || |||||| |||| |||||||    
T  2591705 gacttgtttgtatttaatcctgagtcagggacctatgtgacagcaagctgcagaatcagggactaaa 2591639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 141
Target Start/End: Original strand, 2592020 - 2592118
Alignment:
Q  43 gactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagagtcagagactaaa 141  Q
    ||||||| ||||||||||||||   | | | |||||  ||||||||||||| ||||||||||||||||||||||| ||| |||||| | || |||||||    
T  2592020 gactaaagtgataacggaagtattgagtcagggacttatttgtatttaatcctgagtcagggacctatgtgacagcgagctgcagaattagggactaaa 2592118  T

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Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 133
Target Start/End: Original strand, 33428448 - 33428538
Alignment:
Q  43 gactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagagtcag 133  Q
    ||||||| ||| ||||||| | || | | |||||||  ||||||||||||  ||||||||||||||||||||||  |||||||||||||||    
T  33428448 gactaaagtgacaacggaaatgcagagtcaaggacttctttgtatttaattctgagtcagggacctatgtgacaacgaggtgcagagtcag 33428538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 141
Target Start/End: Original strand, 45600952 - 45601049
Alignment:
Q  43 gactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagagtcagagactaaa 141  Q
    ||||||| ||||||||||||| || | | | |||||  ||||||||||||| ||| ||||||||||||||||||| ||||  ||||||||| |||||||    
T  45600952 gactaaagtgataacggaagtgcagagtca-ggacttctttgtatttaatcctgaatcagggacctatgtgacagcgagggacagagtcagggactaaa 45601049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 133
Target Start/End: Complemental strand, 48573057 - 48573005
Alignment:
Q  81 tttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagagtcag 133  Q
    ||||||||||||| |||||||||||||||||||| |  |||||||||||||||    
T  48573057 tttgtatttaatcctgagtcagggacctatgtgataacgaggtgcagagtcag 48573005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 141
Target Start/End: Complemental strand, 55388217 - 55388085
Alignment:
Q  9 acatcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacct 108  Q
    ||||||||| ||||||||  ||||||||| | | ||||||| ||||||||| ||| || | | |   |||  ||||||||||||| |||||||| |||||    
T  55388217 acatcatcacttaacaaatttttttaacgtcagggactaaagtgataacgggagtgcagagtcagtaacttatttgtatttaatcctgagtcagagacct 55388118  T
Q  109 atgtgacagtgaggtgcagagtcagagactaaa 141  Q
    || |||||| ||| |||||| |||| |||||||    
T  55388117 atatgacagcgagctgcagaatcagggactaaa 55388085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 116
Target Start/End: Complemental strand, 36279096 - 36278989
Alignment:
Q  9 acatcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacct 108  Q
    ||||||||| |||| | || ||||||||| | | ||||||| ||||||||||||| || | | |  ||||  ||||||||||||| ||| ||||||||||    
T  36279096 acatcatcacttaaaagaattttttaacgtcagggactaaaatgataacggaagtgcagagtcagagacttatttgtatttaatcctgaatcagggacct 36278997  T
Q  109 atgtgaca 116  Q
    ||||||||    
T  36278996 atgtgaca 36278989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 117
Target Start/End: Original strand, 11773053 - 11773138
Alignment:
Q  32 ttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatgtgacag 117  Q
    |||||||| | ||||||| |||||||||||||  | | | |  ||||  ||||||||||||| |||||||||||||||||||||||    
T  11773053 ttaacgccagggactaaagtgataacggaagtgtagagtcagagacttatttgtatttaatcctgagtcagggacctatgtgacag 11773138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 26107065 - 26106985
Alignment:
Q  44 actaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatgtgacagtgaggtg 124  Q
    ||||||||||||| |||||| |||||| || ||||| ||| |||||| |||||||| ||||| || | ||||| |||||||    
T  26107065 actaaactgataatggaagtgcacattcaaagactattttatatttattcatgagttagggaactttatgacaatgaggtg 26106985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 133
Target Start/End: Complemental strand, 34263877 - 34263825
Alignment:
Q  81 tttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagagtcag 133  Q
    ||||||||||||| ||| ||| |||||| |||||||| |||||||||||||||    
T  34263877 tttgtatttaatcctgaatcaaggacctctgtgacagcgaggtgcagagtcag 34263825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 40318694 - 40318786
Alignment:
Q  9 acatcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtca 101  Q
    ||||||||| |||||| |||||||| ||  | | ||||||| ||||||||||| | |||||||||  |||| ||||||||||||  |||||||    
T  40318694 acatcatcaattaacataagttttttacatcagggactaaattgataacggaaatgcacatttaaaaactactttgtatttaattctgagtca 40318786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 132
Target Start/End: Original strand, 19115197 - 19115248
Alignment:
Q  81 tttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagagtca 132  Q
    ||||||||||||| ||||| | ||||||||||||||  ||||||||||||||    
T  19115197 tttgtatttaatcctgagtgaaggacctatgtgacatcgaggtgcagagtca 19115248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 91
Target Start/End: Original strand, 30360447 - 30360526
Alignment:
Q  12 tcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaa 91  Q
    |||||||||||||||| |||||||||||   ||||||| | ||||||||| | ||||||||  ||||| ||| |||||||    
T  30360447 tcatcagttaacaaaaatttttaacgccaaagactaaattaataacggaaatgcacatttagagactactttatatttaa 30360526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 132
Target Start/End: Original strand, 47075402 - 47075453
Alignment:
Q  81 tttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagagtca 132  Q
    ||||||||||||| ||||| | ||||||||||||||  ||||||||||||||    
T  47075402 tttgtatttaatcttgagtgacggacctatgtgacaacgaggtgcagagtca 47075453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 116
Target Start/End: Original strand, 49261585 - 49261620
Alignment:
Q  81 tttgtatttaatcatgagtcagggacctatgtgaca 116  Q
    ||||||||||||| ||||||||||||||||||||||    
T  49261585 tttgtatttaatcctgagtcagggacctatgtgaca 49261620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 133
Target Start/End: Original strand, 26652617 - 26652707
Alignment:
Q  43 gactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagagtcag 133  Q
    ||||||||||||||| ||  |||||||| | |||||| ||||||||| ||| | ||||||||||  | ||||||| ||| |||| ||||||    
T  26652617 gactaaactgataacagagatacacattcatggactattttgtattttatcctaagtcagggactaaagtgacagcgagatgcaaagtcag 26652707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 141
Target Start/End: Original strand, 47118040 - 47118162
Alignment:
Q  19 ttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatgtgacagt 118  Q
    ||||||||| | ||||||| | | ||||||| |||||||| |||| || | | |  ||||  |||| |||||||| |||||| ||||| ||| |||||      
T  47118040 ttaacaaaattatttaacgtcagggactaaagtgataacgaaagtgcagagtcagagacttctttgcatttaatcctgagtcggggacttatatgacaac 47118139  T
Q  119 gaggtgcagagtcagagactaaa 141  Q
    ||||||||||||||| |||||||    
T  47118140 gaggtgcagagtcagggactaaa 47118162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 133
Target Start/End: Original strand, 47428614 - 47428660
Alignment:
Q  87 tttaatcatgagtcagggacctatgtgacagtgaggtgcagagtcag 133  Q
    ||||||| ||||||| ||||||||||||||| |||||||| ||||||    
T  47428614 tttaatcttgagtcacggacctatgtgacagagaggtgcaaagtcag 47428660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 36280296 - 36280401
Alignment:
Q  9 acatcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacct 108  Q
    ||||||||| |||||| |  ||||||||| | | ||||||| ||||||||||||| || | | |  ||||  ||| ||||||||| |||||||| |||||    
T  36280296 acatcatcacttaacatatttttttaacgtcagggactaaagtgataacggaagtgcagagtcagagacttatttatatttaatcctgagtcagagacct 36280395  T
Q  109 atgtga 114  Q
    ||||||    
T  36280396 atgtga 36280401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 126
Target Start/End: Complemental strand, 47427932 - 47427887
Alignment:
Q  81 tttgtatttaatcatgagtcagggacctatgtgacagtgaggtgca 126  Q
    ||||||||||||  ||||||| ||||||||||||||| ||||||||    
T  47427932 tttgtatttaattttgagtcaaggacctatgtgacagcgaggtgca 47427887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 129
Target Start/End: Complemental strand, 50753890 - 50753841
Alignment:
Q  80 gtttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagag 129  Q
    |||| ||||||||| ||| | ||||||||||||||||| |||||||||||    
T  50753890 gtttatatttaatcctgaattagggacctatgtgacagcgaggtgcagag 50753841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 132
Target Start/End: Complemental strand, 1825 - 1707
Alignment:
Q  13 catcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatgt 112  Q
    ||||| ||||||||||||||||||||| | ||||||||||||||| ||||| ||| ||| ||||||| |||||||||| ||  |||| || ||| | |||    
T  1825 catcaattaacaaaagtttttaacgccagagactaaactgataacagaagtgcacgttt-aggactactttgtatttattcccgagttagagacttttgt 1727  T
Q  113 gacagtgaggtgcagagtca 132  Q
    ||||| ||||| | ||||||    
T  1726 gacagcgaggttctgagtca 1707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 91
Target Start/End: Complemental strand, 3086 - 3009
Alignment:
Q  13 catcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaa 91  Q
    ||||| ||||||||||||||||||||| | ||||||||||||||||||| | ||| ||| ||||||| |||||||||||    
T  3086 catcaattaacaaaagtttttaacgccagagactaaactgataacggaaatgcacgttt-aggactactttgtatttaa 3009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 134
Target Start/End: Original strand, 12676459 - 12676574
Alignment:
Q  19 ttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatgtgacagt 118  Q
    |||||| || ||||||| ||| | |||||||||||||||  |||| ||||||||  ||||| ||||||||||||| |||| ||| ||||  |||||||      
T  12676459 ttaacataaatttttaatgccagagactaaactgataacaaaagtgcacatttagagactactttgtatttaatcctgagacagagaccattgtgacaac 12676558  T
Q  119 gaggtgcagagtcaga 134  Q
    ||||||||||||||||    
T  12676559 gaggtgcagagtcaga 12676574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 132
Target Start/End: Complemental strand, 29845620 - 29845502
Alignment:
Q  13 catcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatgt 112  Q
    ||||| ||||||||||||||||||||| | ||||||||||||||| ||||| ||| ||| ||||||| |||||||||| ||  |||| || ||| | |||    
T  29845620 catcaattaacaaaagtttttaacgccagagactaaactgataacagaagtgcacgttt-aggactactttgtatttattcccgagttagagacttttgt 29845522  T
Q  113 gacagtgaggtgcagagtca 132  Q
    ||||| ||||| | ||||||    
T  29845521 gacagcgaggttctgagtca 29845502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 91
Target Start/End: Complemental strand, 29856884 - 29856807
Alignment:
Q  13 catcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaa 91  Q
    ||||| ||||||||||||||||||||| | ||||||||||||||||||| | ||| ||| ||||||| |||||||||||    
T  29856884 catcaattaacaaaagtttttaacgccagagactaaactgataacggaaatgcacgttt-aggactactttgtatttaa 29856807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 75 - 141
Target Start/End: Complemental strand, 30748077 - 30748011
Alignment:
Q  75 gactagtttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagagtcagagactaaa 141  Q
    |||| |||||||||||||| | ||||||||||||||||||||| |||||||||| |||| |||||||    
T  30748077 gacttgtttgtatttaatcctaagtcagggacctatgtgacagcgaggtgcagaatcagggactaaa 30748011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 81 - 141
Target Start/End: Complemental strand, 31219027 - 31218967
Alignment:
Q  81 tttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagagtcagagactaaa 141  Q
    ||||||||||||| ||||| | ||||||||||||||| |||||||||||||||||| ||||    
T  31219027 tttgtatttaatcctgagttaaggacctatgtgacagcgaggtgcagagtcagagattaaa 31218967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 24621345 - 24621440
Alignment:
Q  13 catcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacct 108  Q
    ||||||||||||||||||| ||||||| | ||||||||| |||||  |||| || ||| ||  |||| ||||||||||||||| |||||| |||||    
T  24621345 catcagttaacaaaagtttgtaacgccagagactaaactaataacaaaagtgcaaattcaaaaactactttgtatttaatcattagtcagagacct 24621440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 75 - 132
Target Start/End: Original strand, 6468826 - 6468883
Alignment:
Q  75 gactagtttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagagtca 132  Q
    ||||| |||||||||||||||||||||||||||| |||||||| ||  ||||||||||    
T  6468826 gactattttgtatttaatcatgagtcagggacctttgtgacagcgatatgcagagtca 6468883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 24621218 - 24621122
Alignment:
Q  12 tcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacct 108  Q
    ||||||||||| | |||||||||| | |  |||||||||||||||||||||  | ||||||  || |  ||||||||||||||||||||| ||||||    
T  24621218 tcatcagttaatagaagtttttaatgtcaatgactaaactgataacggaagcgcgcatttagagatttctttgtatttaatcatgagtcaaggacct 24621122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 141
Target Start/End: Complemental strand, 23508021 - 23507961
Alignment:
Q  80 gtttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagagtcagagactaaa 141  Q
    |||||||||||||| ||| ||||| ||||||||||||| |||||| |||| |||||||||||    
T  23508021 gtttgtatttaatcctgaatcaggaacctatgtgacagggaggtgtagag-cagagactaaa 23507961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 128
Target Start/End: Complemental strand, 5265339 - 5265224
Alignment:
Q  12 tcatcagttaacaaaagtttttaacgccggtgactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatg 111  Q
    |||||| |||||| | |||||||||| | | ||||||||||||||||||||| |||||| || | ||| |||| |||||||| ||| |||| ||||  ||    
T  5265339 tcatcaattaacagatgtttttaacgtcag-gactaaactgataacggaagtgcacattcaaaggctaatttgcatttaatcttgaatcagagaccattg 5265241  T
Q  112 tgacagtgaggtgcaga 128  Q
    | |||  ||||||||||    
T  5265240 taacaacgaggtgcaga 5265224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 133
Target Start/End: Original strand, 31219211 - 31219263
Alignment:
Q  81 tttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcagagtcag 133  Q
    ||||||||||||| ||||| |  |||||||||||||| |||||||||||||||    
T  31219211 tttgtatttaatcctgagttaatgacctatgtgacagcgaggtgcagagtcag 31219263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 128
Target Start/End: Complemental strand, 116165 - 116080
Alignment:
Q  43 gactaaactgataacggaagtacacatttaaggactagtttgtatttaatcatgagtcagggacctatgtgacagtgaggtgcaga 128  Q
    ||||||| ||||||||||||| || | | | |||||  ||||||||||||| ||||||||||||||||||||||| ||| ||||||    
T  116165 gactaaagtgataacggaagtgcatagtcagggacttatttgtatttaatcctgagtcagggacctatgtgacagcgagctgcaga 116080  T

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Target: scaffold0232 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0232
Description:

Target: scaffold0232; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 406 - 435
Target Start/End: Complemental strand, 21452 - 21423
Alignment:
Q  406 tggtttggtttggtttatgaaccatgcaca 435  Q
    ||||||||||||||||||||||||||||||    
T  21452 tggtttggtttggtttatgaaccatgcaca 21423  T

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