View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4541_high_10 (Length: 408)
Name: NF4541_high_10
Description: NF4541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4541_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 20 - 389
Target Start/End: Complemental strand, 6946154 - 6945785
Alignment:
| Q |
20 |
tcagaattatacttcaccaacaccaaagatccaaccaagagcctttccaaaattgtaacatctctacaactcctatcaagccagagaaaaggcaccatga |
119 |
Q |
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| T |
6946154 |
tcagaattatacttcaccaacaccaaagatccaaccaagagccttttcaaaattgtaacatctctacaactcctatcaagccagagaaaaggcaccatga |
6946055 |
T |
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| Q |
120 |
actacatcccagaagattgaccaacaatcaactatttcaccaaaggattaaactccacagatcacctgacccaccaaacctcacaatgcaaaggaaaaac |
219 |
Q |
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| T |
6946054 |
actacatcccagaagattgaccaacaatcaactatttcaccaaaggattaaactccacagatcacctgacccaccaaacctcacaatgcaaaggaaaaac |
6945955 |
T |
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| Q |
220 |
agttaaccgttagcgaatcaaaagacaaaataccccaatctgctgccattaaagaaaactaaaatgagacctccaagacaactaatacagaaacagtgag |
319 |
Q |
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| T |
6945954 |
agttaactgttagcgaatcaaaagacaaaataccccaatctgctgccattaaagaaaactaaaatgagacctccaagacaactaatacagaaacagtgag |
6945855 |
T |
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| Q |
320 |
acaaaacaccaatgcatcaatctggtctgaaacttcaggtcactatatcgcccatacacaccgtcggatt |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
6945854 |
acaaaacaccaatgcatcaatctggtctgaaacttcaggtcactatatcgcccatacacaccctcggatt |
6945785 |
T |
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