View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4541_high_15 (Length: 382)
Name: NF4541_high_15
Description: NF4541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4541_high_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 20 - 361
Target Start/End: Original strand, 27080611 - 27080951
Alignment:
| Q |
20 |
atgactccttttagaatcttctaaaattcttcatgttgagttttatgtcatttatcaaggactcttattgtctagacatatgcaccaccatgaagtcatt |
119 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27080611 |
atgattccttttagaatcttctaaaattcttcatgttgagctttatgtcatttatcagggactcttattgtctagacatatgcaccaccatgaagtcatt |
27080710 |
T |
|
| Q |
120 |
tgtttcaccgactctttacatttcattgttcttcttcaagatcaaactccaaaatttcacaaatttgctacattgatcaaaggcataaattatcttctac |
219 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||| |
|
|
| T |
27080711 |
tgtttcacagactctttacatttcattgttcttcttcaagatcaaactccaaaatttcacaaatttgctacattaatcaaaggcataaaaaatctt-tac |
27080809 |
T |
|
| Q |
220 |
atcaaaattggcatgtctgcatcacccacactctctgagaagaaaataattgtaatcattttcttgctaagctatgcgcttcttccaatattggtctcat |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27080810 |
atcaaaattggcatgtctgcatcacccacactgtctgagaagaaaataattgtaatcattttcttgctaagctatgcgcttcttccaatattggtctcat |
27080909 |
T |
|
| Q |
320 |
tgtccatcaaactcctctaataattctctttaacctcctcta |
361 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
27080910 |
ggtccatcaaactcctctaataagtctctttaacctcctcta |
27080951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 20 - 361
Target Start/End: Complemental strand, 27149046 - 27148706
Alignment:
| Q |
20 |
atgactccttttagaatcttctaaaattcttcatgttgagttttatgtcatttatcaaggactcttattgtctagacatatgcaccaccatgaagtcatt |
119 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27149046 |
atgattccttttagaatcttctaaaattcttcatgttgagctttatgtcatttatcagggactcttattgtctagacatatgcaccaccatgaagtcatt |
27148947 |
T |
|
| Q |
120 |
tgtttcaccgactctttacatttcattgttcttcttcaagatcaaactccaaaatttcacaaatttgctacattgatcaaaggcataaattatcttctac |
219 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||| |
|
|
| T |
27148946 |
tgtttcacagactctttacatttcattgttcttcttcaagatcaaactccaaaatttcacaaatttgctacattaatcaaaggcataaaaaatctt-tac |
27148848 |
T |
|
| Q |
220 |
atcaaaattggcatgtctgcatcacccacactctctgagaagaaaataattgtaatcattttcttgctaagctatgcgcttcttccaatattggtctcat |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27148847 |
atcaaaattggcatgtctgcatcacccacactgtctgagaagaaaataattgtaatcattttcttgctaagctatgcgcttcttccaatattggtctcat |
27148748 |
T |
|
| Q |
320 |
tgtccatcaaactcctctaataattctctttaacctcctcta |
361 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
27148747 |
ggtccatcaaactcctctaataagtctctttaacctcctcta |
27148706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University