View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4541_high_17 (Length: 287)
Name: NF4541_high_17
Description: NF4541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4541_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 8e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 22 - 280
Target Start/End: Original strand, 49871081 - 49871320
Alignment:
| Q |
22 |
ccatctctagttgatgtgcttgccctaaatactaaatcagtacagttgaaattatttgattattattattagattagatacattaaaagaaggtggaagc |
121 |
Q |
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| T |
49871081 |
ccatctctagttgatgtgcttgccctaaatactaaatcagtacagttgaaattatttcattattattattagattagatacattaaaagaaggtggaagc |
49871180 |
T |
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| Q |
122 |
aatatgcatatcagttaactgatacagtgatagtttatattgatatcttttacaggaagaaaagctccgccaaatcattacacattcaaaatgcagtgcc |
221 |
Q |
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| T |
49871181 |
aatatgcatatcagttaactgatacagtgatagtttatattgatatcttttacagaaaggaaagctccgccaagtcattacacat--------------- |
49871265 |
T |
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| Q |
222 |
tccatagaaaaatgtgtctaggaagagtttgaagctggggacacttagattgatgatgt |
280 |
Q |
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| T |
49871266 |
----tagaaaaatgtgtctaggaagagtttgaagctggggacacttagattgatgatgt |
49871320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 23 - 218
Target Start/End: Complemental strand, 44204631 - 44204438
Alignment:
| Q |
23 |
catctctagtt-gatgtgcttgccctaaatactaaatcagtacagttgaaattatttgattattattattagattagatacattaaaagaaggtggaagc |
121 |
Q |
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| T |
44204631 |
catctctagtttgatgtgtttgtcgtaaatacaaaatcagaacagttgaaattatt---ccattattattagattagatacattaaaagaaggtggatat |
44204535 |
T |
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| Q |
122 |
aatatgcatatcagttaactgatacagtgatagtttatattgatatcttttacaggaagaaaagctccgccaaatcattacacattcaaaatgcagt |
218 |
Q |
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| T |
44204534 |
agtatgcatatcatttaactgaaatggtgataatttatatttatatcttttacatgaaggaaagctccgccaagtcattacacattcaaaatgcagt |
44204438 |
T |
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