View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4541_high_20 (Length: 252)
Name: NF4541_high_20
Description: NF4541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4541_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 37090972 - 37090747
Alignment:
| Q |
1 |
aacaagctcgctccctcaggtattgttctcattcattcttagtccatttactgttacaaacttgtttacgtgatccttgagtgatgtactatnnnnnnnn |
100 |
Q |
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| T |
37090972 |
aacaagctcgctccctcaggtattgttctcattcattcttagtccatttactgttacaaacttgtttacgtgatccttgagtgatgtactataaaaaaaa |
37090873 |
T |
|
| Q |
101 |
ttcattactcaggaggaatcttacggctagtggaccaagacctaatccgcaaggatcttaccattatggtttgataaacacaacgcgtacaataagactt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
37090872 |
ttcattactcaggaggaatcttacggctagtggaccaagacctaatccgcaaggatcttaccattatggtttgataaacacgacgcgtacaataagactt |
37090773 |
T |
|
| Q |
201 |
gaaaactctgcaccagttatcaatgg |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
37090772 |
gaaaactctgcaccagttatcaatgg |
37090747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 110 - 228
Target Start/End: Original strand, 17348196 - 17348314
Alignment:
| Q |
110 |
caggaggaatcttacggctagtggaccaagacctaatccgcaaggatcttaccattatggtttgataaacacaacgcgtacaataagacttgaaaactct |
209 |
Q |
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||||||||||||||| || |||||||||||||| ||||| |||||||| ||||||||||| ||||||||||||| |||||||| |||||| |||| ||| |
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| T |
17348196 |
caggaggaatcttacagcaagtggaccaagaccaaatccacaaggatcctaccattatggaatgataaacacaacacgtacaattagacttcaaaattct |
17348295 |
T |
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| Q |
210 |
gcaccagttatcaatggaa |
228 |
Q |
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| T |
17348296 |
gctccaattatcaatggaa |
17348314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 110 - 228
Target Start/End: Complemental strand, 17135675 - 17135557
Alignment:
| Q |
110 |
caggaggaatcttacggctagtggaccaagacctaatccgcaaggatcttaccattatggtttgataaacacaacgcgtacaataagacttgaaaactct |
209 |
Q |
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| T |
17135675 |
caggaggaatcttacagcaagtggaccaagaccaaatccacaaggatcctaccattatggaatgataaacacaacacgtacaattagacttcaaaattct |
17135576 |
T |
|
| Q |
210 |
gcaccagttatcaatggaa |
228 |
Q |
| |
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|| ||| ||||||| |||| |
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| T |
17135575 |
gctccaattatcaaaggaa |
17135557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 180
Target Start/End: Complemental strand, 28939748 - 28939685
Alignment:
| Q |
117 |
aatcttacggctagtggaccaagacctaatccgcaaggatcttaccattatggtttgataaaca |
180 |
Q |
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| T |
28939748 |
aatcttactgcaagtggaccaaggcctaatccacaaggatcataccactatggtatgataaaca |
28939685 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 8571062 - 8571006
Alignment:
| Q |
123 |
acggctagtggaccaagacctaatccgcaaggatcttaccattatggtttgataaac |
179 |
Q |
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||||| |||||||||||||| |||||||||||||| |||||||| || |||||||| |
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| T |
8571062 |
acggcaagtggaccaagaccaaatccgcaaggatcataccattacggcatgataaac |
8571006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 184
Target Start/End: Complemental strand, 53749675 - 53749611
Alignment:
| Q |
120 |
cttacggctagtggaccaagacctaatccgcaaggatcttaccattatggtttgataaacacaac |
184 |
Q |
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||||| || ||||||||||| ||||| || |||||||| |||||||| ||| | ||||||||||| |
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| T |
53749675 |
cttacagcaagtggaccaaggcctaacccacaaggatcctaccattacggtctcataaacacaac |
53749611 |
T |
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