View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4541_high_23 (Length: 235)
Name: NF4541_high_23
Description: NF4541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4541_high_23 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 13 - 217
Target Start/End: Original strand, 7500586 - 7500790
Alignment:
| Q |
13 |
gagaagaaggaacggtaaccaccagggaaagtggtgataatgtggctaacggttggatgcagaaggcaaggccacatggaggtgcaaatgttccgccata |
112 |
Q |
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| T |
7500586 |
gagaagaaggaacggtaaccaccagggaaagtggtgataatgtggctaacggttggatgcagaaggcaaggccacatggaggtgcaaatgttccgccata |
7500685 |
T |
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| Q |
113 |
attcctcgttgttgcagatcaagtggcgaaggtcagaacatacacaggacaatgccattaaggctgccccatcgaggcgtggaaggatataggtctggat |
212 |
Q |
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| T |
7500686 |
attcctcgttgttgcagatcaagtggcgaaggtcggaacatacacaggacaatgccattaaggctgccccatcgaggcgtggaaggatataggtctggat |
7500785 |
T |
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| Q |
213 |
gatgt |
217 |
Q |
| |
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||||| |
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| T |
7500786 |
gatgt |
7500790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 7502019 - 7502118
Alignment:
| Q |
13 |
gagaagaaggaacggtaaccaccagggaaagtggtgataatgtggctaacggttggatgcagaaggcaaggccacatggaggtgcaaatgttccgccata |
112 |
Q |
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| T |
7502019 |
gagaagaatgaactgtaaccaccggggaaagtggagatgacatcgttaacgattggatccataagggaaggccactttgaggtgcaaatattccgccata |
7502118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 161
Target Start/End: Complemental strand, 27253177 - 27253110
Alignment:
| Q |
94 |
gtgcaaatgttccgccataattcctcgttgttgcagatcaagtggcgaaggtcagaacatacacagga |
161 |
Q |
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| T |
27253177 |
gtgcatatgttccgccatagatcttcgttgttgcagatcatgtggcggagttctgaagatacacagga |
27253110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 27240952 - 27240919
Alignment:
| Q |
13 |
gagaagaaggaacggtaaccaccagggaaagtgg |
46 |
Q |
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||||| |||||||||||||||||||||||||||| |
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| T |
27240952 |
gagaaaaaggaacggtaaccaccagggaaagtgg |
27240919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 27246481 - 27246448
Alignment:
| Q |
13 |
gagaagaaggaacggtaaccaccagggaaagtgg |
46 |
Q |
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|||||||||||| ||||||||||||||||||||| |
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| T |
27246481 |
gagaagaaggaatggtaaccaccagggaaagtgg |
27246448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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