View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4541_high_7 (Length: 446)
Name: NF4541_high_7
Description: NF4541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4541_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 20 - 430
Target Start/End: Original strand, 8074066 - 8074478
Alignment:
| Q |
20 |
caatggttgtatttaacgtctccgacttcctgagacattaaagtaaaaccaacaacaccaagaaccaatatcaatattactacaacactgattttctaaa |
119 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
8074066 |
caatggttgtatttaacgtctctgacttcctgagacattaaagtaaaaccaacaacaccaagaaccaatatcagtattactataacactgattttctaaa |
8074165 |
T |
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| Q |
120 |
tttcttgttttatttatggtgccaatnnnnnnnn-cttggttaacatgatctgattaaatgatcttgcagttttatactttccttgag-acgtctctagt |
217 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
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| T |
8074166 |
tttcttgttttatttatggtgccaataaaaaaaaacttggttaacatgatctgattaaatgatctggcagttttatactttccttgagtacgtctctagt |
8074265 |
T |
|
| Q |
218 |
gacggcatcgttactgccacatttcatagcattctttagtgatggagaaatccctggaacacctagctctcttgctacgacttttcttgcttttggtagg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8074266 |
gacggcatcgttactgccacatttcatagcattctttagtgatggagaaatccctggaacacctagctctcttgctacgacttttcttgcttttggtagg |
8074365 |
T |
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| Q |
318 |
atctctaacactccgttctagattttgattccatctgtgagtttatgtaacaatgttggattacctgcagttttgaacctcgctttcgcattgagtgtga |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8074366 |
atctctaacactccgttctagattttgattccatctgtgagtttatgtaacaatgttggattacctgcagttttgaacctcgctttcgcattgagtgtga |
8074465 |
T |
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| Q |
418 |
tgggatttctgat |
430 |
Q |
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| T |
8074466 |
tgggatttctgat |
8074478 |
T |
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