View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4541_low_14 (Length: 385)
Name: NF4541_low_14
Description: NF4541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4541_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 115; Significance: 3e-58; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 27080838 - 27080984
Alignment:
| Q |
1 |
cactctctgagaagaaaataattggaataattttcttgctaagatatgcgcttcttccaatattggtatcatggtacatcaaactcctctaataagtatc |
100 |
Q |
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|||| ||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||| || |
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| T |
27080838 |
cactgtctgagaagaaaataattgtaatcattttcttgctaagctatgcgcttcttccaatattggtctcatggtccatcaaactcctctaataagtctc |
27080937 |
T |
|
| Q |
101 |
tttaacatcctctactcggattctatacctatttcgatataatatag |
147 |
Q |
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| T |
27080938 |
tttaacctcctctactcggattctatacctatttcgatataatatag |
27080984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 27148819 - 27148673
Alignment:
| Q |
1 |
cactctctgagaagaaaataattggaataattttcttgctaagatatgcgcttcttccaatattggtatcatggtacatcaaactcctctaataagtatc |
100 |
Q |
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|||| ||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||| || |
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| T |
27148819 |
cactgtctgagaagaaaataattgtaatcattttcttgctaagctatgcgcttcttccaatattggtctcatggtccatcaaactcctctaataagtctc |
27148720 |
T |
|
| Q |
101 |
tttaacatcctctactcggattctatacctatttcgatataatatag |
147 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
27148719 |
tttaacctcctctactcggattctatacctatttcgatataatatag |
27148673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 340 - 378
Target Start/End: Original strand, 27081100 - 27081138
Alignment:
| Q |
340 |
gcaattattcgatccttataaacactacccttcttctct |
378 |
Q |
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| T |
27081100 |
gcaattatttgatccttataaacacttcccttcttctct |
27081138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 340 - 378
Target Start/End: Complemental strand, 27148557 - 27148519
Alignment:
| Q |
340 |
gcaattattcgatccttataaacactacccttcttctct |
378 |
Q |
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||||||||| |||||||||||||||| |||||||||||| |
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| T |
27148557 |
gcaattatttgatccttataaacacttcccttcttctct |
27148519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 279
Target Start/End: Original strand, 27080999 - 27081039
Alignment:
| Q |
239 |
atttatactttcctcttttacgttttgtcctttagctttgt |
279 |
Q |
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|||| ||||||||| |||||| ||||||||||||||||||| |
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| T |
27080999 |
atttttactttccttttttactttttgtcctttagctttgt |
27081039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 279
Target Start/End: Complemental strand, 27148658 - 27148618
Alignment:
| Q |
239 |
atttatactttcctcttttacgttttgtcctttagctttgt |
279 |
Q |
| |
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|||| ||||||||| |||||| ||||||||||||||||||| |
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| T |
27148658 |
atttttactttccttttttactttttgtcctttagctttgt |
27148618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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