View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4541_low_16 (Length: 305)
Name: NF4541_low_16
Description: NF4541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4541_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 40820076 - 40820269
Alignment:
| Q |
17 |
aagaacatgtgaatatcatactctactgcattatcacacatcacacatgtcatttggaaaaggacacctccatggtggaagttgaatctggtgggaaggc |
116 |
Q |
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| T |
40820076 |
aagaacatgtgaatatcatactctactgcattatcacacatcacacatgtcatttggaaaagaacacctccatggtggaggttgaatctggtgggaaggc |
40820175 |
T |
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| Q |
117 |
aaaactggagtaaacggcaacaaaaatgtttgatttttggaggtaatggcaacgatcaagcctcattcgagcaatagaagtttctatctgtata |
210 |
Q |
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| T |
40820176 |
aaaactggagtaaacggcaacaaaaatgtttgatttttggaggtaatggcaacgatcaagcctcattcgagcaacagaagtttctatctgtata |
40820269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 291
Target Start/End: Original strand, 40820312 - 40820350
Alignment:
| Q |
253 |
cctaactcctaagatatagaaacgagttaatgacctatg |
291 |
Q |
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| T |
40820312 |
cctaactcctaagagatagaaacgagttaatgacctatg |
40820350 |
T |
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