View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4541_low_19 (Length: 257)
Name: NF4541_low_19
Description: NF4541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4541_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 11 - 242
Target Start/End: Complemental strand, 47320050 - 47319819
Alignment:
| Q |
11 |
catcatcaccttgttgttcatcaccatccaatggaagtgagattttgtgtccctctggcaaccaagtgttgattcccaaaagtaaatctttatggtcttt |
110 |
Q |
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| T |
47320050 |
catcatcaccttgttgttcatcaccatccaatggaagtgagattttgtgtccctctggcaaccaagtgttgagtcccaaaagtaaatctttatggtcttt |
47319951 |
T |
|
| Q |
111 |
aaacaactccatcagtccttctttgaaaactctcatatcaattcttttggcattgtaatcaactacgagtttcaagaattcatcatacttttccatctta |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47319950 |
aaacaactccatcagtccttctttgaaaactctcatatcaattcttttggcattgtaatcaactacgagtttcaagaattcatcatacttttccatctta |
47319851 |
T |
|
| Q |
211 |
tctggaaatgcaactttaactgctgttgcaaa |
242 |
Q |
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| T |
47319850 |
tatggaaatgcaactttaactgctgttgcaaa |
47319819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 11 - 237
Target Start/End: Complemental strand, 47316586 - 47316359
Alignment:
| Q |
11 |
catcatcaccttgttgttc-atcaccatccaatggaagtgagattttgtgtccctctggcaaccaagtgttgattcccaaaagtaaatctttatggtctt |
109 |
Q |
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||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| | ||||||| ||| ||||||||| ||||||||||| |
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| T |
47316586 |
catcatcaccttgttgttctatcaccatccaatgaaagtgagattttgtgtccctctggcaagaaggtgttgaatcctgaaagtaaatttttatggtctt |
47316487 |
T |
|
| Q |
110 |
taaacaactccatcagtccttctttgaaaactctcatatcaattcttttggcattgtaatcaactacgagtttcaagaattcatcatacttttccatctt |
209 |
Q |
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| T |
47316486 |
taaacaactccatcattccttctttgacaactcttacatcaattcttttggcttggtaatcagctaggagtttcaagaattcattgaacttttccatctt |
47316387 |
T |
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| Q |
210 |
atctggaaatgcaactttaactgctgtt |
237 |
Q |
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|||| ||||| ||| |||||| ||||| |
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| T |
47316386 |
atcttcaaatgtaaccttaacttctgtt |
47316359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 147 - 237
Target Start/End: Complemental strand, 47314700 - 47314608
Alignment:
| Q |
147 |
atcaattcttttggcattgtaatcaactacgagtttcaagaatt--catcatacttttccatcttatctggaaatgcaactttaactgctgtt |
237 |
Q |
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| T |
47314700 |
atcaattcttttggcatggtaattaactaggagtttcaggaattttcaccatacttttccctcttattttgaaatgcaactttaaccgctgtt |
47314608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 93 - 213
Target Start/End: Complemental strand, 47319755 - 47319635
Alignment:
| Q |
93 |
taaatctttatggtctttaaacaactccatcagtccttctttgaaaactctcatatcaattcttttggcattgtaatcaactacgagtttcaagaattca |
192 |
Q |
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| T |
47319755 |
taaatcttgatgttctttcaacaactccataattccttctttgatgactcttctatcaattcttttggccctgaaatcatgtaggagtttcatgaaatca |
47319656 |
T |
|
| Q |
193 |
tcatacttttccatcttatct |
213 |
Q |
| |
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||| |||||||| |||||||| |
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| T |
47319655 |
tcaaacttttccttcttatct |
47319635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 218
Target Start/End: Complemental strand, 47316323 - 47316120
Alignment:
| Q |
15 |
atcaccttgttgttcatcaccatccaatggaagtgagattttgtgtccctctggcaaccaagtgttgattcccaaaagtaaatctttatggtctttaaac |
114 |
Q |
| |
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||||| ||||||| |||| ||||||||||||||||||||| ||||| |||||| | |||||| || |||| |||||||| ||| ||||| ||| |
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| T |
47316323 |
atcacgttgttgtaaatcatcatccaatggaagtgagatttcatgtcctggtggcaagaagatgttgaatcttaaaattaaatcttgatgttctttcaac |
47316224 |
T |
|
| Q |
115 |
aactccatcagtccttctttgaaaactctcatatcaattcttttggcattgtaatcaactacgagtttcaagaattcatcatacttttccatcttatctg |
214 |
Q |
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|||||| | | ||||||||||| ||||| |||||||||||||||| | |||| || |||||||| |||||| |||||| ||||| |||||||| |
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| T |
47316223 |
aactccgtaactccttctttgacgactcttctatcaattcttttggcgccgaaatcttgtaggagtttcacgaattcttcatacatttccctcttatctt |
47316124 |
T |
|
| Q |
215 |
gaaa |
218 |
Q |
| |
|
|||| |
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|
| T |
47316123 |
gaaa |
47316120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 93 - 162
Target Start/End: Complemental strand, 47314506 - 47314437
Alignment:
| Q |
93 |
taaatctttatggtctttaaacaactccatcagtccttctttgaaaactctcatatcaattcttttggca |
162 |
Q |
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|||||||| ||| ||||||||||||||||| | ||||||||||| |||||| ||||||||||||||||| |
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| T |
47314506 |
taaatcttgatgctctttaaacaactccataactccttctttgacaactcttttatcaattcttttggca |
47314437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 47314765 - 47314698
Alignment:
| Q |
31 |
tcaccatccaatggaagtgagattttgtgtccctctggcaaccaagtgttgattcccaaaagtaaatc |
98 |
Q |
| |
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|||||| ||||||||| |||||||||||||||| |||||| ||||||||| ||||||||||||||| |
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| T |
47314765 |
tcaccacccaatggaaatgagattttgtgtcccggtggcaagaaagtgttgagtcccaaaagtaaatc |
47314698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 134
Target Start/End: Complemental strand, 47307166 - 47307046
Alignment:
| Q |
14 |
catcaccttgttgttcatcaccatccaatggaagtgagattttgtgtccctctggcaaccaagtgttgattcccaaaagtaaatctttatggtctttaaa |
113 |
Q |
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|||||||| ||||||||||| ||||||||||||||||||||| ||||| |||||| | |||||| || ||| |||| ||||||| ||||| || |
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| T |
47307166 |
catcacctcgttgttcatcatcatccaatggaagtgagatttcttgtcctggtggcaagaagatgttgaatcttgaaattaaacctttatgatcttttaa |
47307067 |
T |
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| Q |
114 |
caactccatcagtccttcttt |
134 |
Q |
| |
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||||||| ||| ||||||||| |
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| T |
47307066 |
caactccgtcattccttcttt |
47307046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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