View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4541_low_20 (Length: 255)
Name: NF4541_low_20
Description: NF4541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4541_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 17 - 249
Target Start/End: Original strand, 52761324 - 52761556
Alignment:
| Q |
17 |
aaaacaagcttgtactctataagttcattataagtgtgctgcaacttctcattgtttgaattaatctcaattagctcagcttcaagttctgctagtttaa |
116 |
Q |
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| T |
52761324 |
aaaacaagcttgtactctataagttcattataagtgtgctgcaacttctcattgtttgaattaatctcaattagctcggcttcaagttctgctagtttaa |
52761423 |
T |
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| Q |
117 |
cctatatccatgaagaaaaattgtgttgcatggcaatgctatcttaaatgtacggtagaaaagatatgaaaattttaaaaacacctgacaacctccaatt |
216 |
Q |
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||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52761424 |
cctatatccatgaagaaaaattgtgttacatggcaatgctctcttaaatgtacggtagaaaagatatgaaaattttaaaaacacctgacaacctccaatt |
52761523 |
T |
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| Q |
217 |
tttctagatcaatagaaccatctctcgttgacc |
249 |
Q |
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||||||||||||||||||||||||| ||||||| |
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| T |
52761524 |
tttctagatcaatagaaccatctcttgttgacc |
52761556 |
T |
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