View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4541_low_22 (Length: 251)
Name: NF4541_low_22
Description: NF4541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4541_low_22 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 9052124 - 9051884
Alignment:
| Q |
1 |
catcgtctaaggtcaccggttgaagaaggcgaaacctcgccaccaagactctcagtacaacaagaagagtaattggaattttgctccaatccataatgtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9052124 |
catcgtctaaggtcaccggttgaagaaggcgaaacctcgccaccaagactctcagtacaacaagaagagtaattggaattttgctccaatccataatgtg |
9052025 |
T |
|
| Q |
101 |
atgctgctacattcacactcttgaaacttggactccttaaactatgtccataatttccataaccaactcctcctacattataaggatcaggagcagggaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9052024 |
atgctgctacattcacactcttgaaacttggactccttaaactatgtccataatttccataaccaactcctcctacattataaggatcaggagcagggaa |
9051925 |
T |
|
| Q |
201 |
agaaagccttttctttactgatccggatctatccctctctg |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9051924 |
agaaagccttttctttactgatccggatctatccctctctg |
9051884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University