View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4541_low_3 (Length: 729)
Name: NF4541_low_3
Description: NF4541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4541_low_3 |
 | |
|
| [»] scaffold0232 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 542; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 10 - 710
Target Start/End: Original strand, 42392028 - 42392733
Alignment:
| Q |
10 |
acatcatcaaaatgacctagaactaacatccttaaaacaaccttagaaaaggcaagataaacttcaagaagctaagaagggaagccatggaaactgtttg |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
42392028 |
acatcatcaaaatgacctagaactaacatccttaaaactaccttagacaaggcaagataaacttcaagaagctaagaagggaagccatgaaaactgtttg |
42392127 |
T |
|
| Q |
110 |
agaaactggtaaaataaataaaccgcnnnnnnn---aacacaaaccggttctgaaccggacccaaagcaaacctgaactgtttcgtnnnnnnn-ttggtt |
205 |
Q |
| |
|
||||||||||||||| |||||||||| || |||||| ||||||||||||||||||| ||||| |||||| |||||| |||||| |
|
|
| T |
42392128 |
agaaactggtaaaatgaataaaccgcttttttttttaatgcaaaccagttctgaaccggacccaaaacaaacttgaactatttcgtaaaaaaaattggtt |
42392227 |
T |
|
| Q |
206 |
ttttctgaaacagtttaagaaaccaaaccataaattggatatggtttggtttggtttatgaaccatgcacactcctagttataacaacttaacaagaagt |
305 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42392228 |
ttttctgaaacaggttaagaaaccaaaccataaattgaatatggtttggtttgatttatgaaccatgcacactcctagttataacaacttaacaagaagt |
42392327 |
T |
|
| Q |
306 |
atatccattaggtcactcaacacct-ggtatgaacctctttcccgcaacactactaacaatacacatggccatttcaaatgagtaatatttatgaatttt |
404 |
Q |
| |
|
||| |||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42392328 |
ataaccattacgtcactcaacaccttggtatgaacctctttcccgcaacactgctaacaatacacatggccatttcaaatgagtaatatttatgaatttt |
42392427 |
T |
|
| Q |
405 |
aaaaggtaaatatgtgcttaaattttaagactgaagaatacaccgtatgtatcaaaaagaagcatgttaacatgaaaagtaccagttataattggctcat |
504 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
42392428 |
aaaaggtaaatatgtgcttaaattttaagacagaagaatacactgtatgtatcgaaaagaagcatgtcaacatgaaaagtaccagttataattggctcat |
42392527 |
T |
|
| Q |
505 |
cttcaaacttttcagacaaatgaaaacaaatttctcttccatttttatttagtgtagctaaataaattatttagactaaacttcaagtagcacacatcta |
604 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
42392528 |
cttcaaacttttcagacaaatgaaaacaaatttctcttccatttttatttagtgtagctaaataaattattgagactaaacttcaagtagcccacatcta |
42392627 |
T |
|
| Q |
605 |
aatacaagtattcattctgattttatatgttgatgtaataatgtttttgcagactttaagctatttagattatctcaaattcaaagcattatacacaact |
704 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42392628 |
aatacaagtattcattttgattttatatgttgatgtaataatgtttttgcagactttaagctatttagattatctcaaattcaaagcattatacacaact |
42392727 |
T |
|
| Q |
705 |
ggagta |
710 |
Q |
| |
|
|||||| |
|
|
| T |
42392728 |
ggagta |
42392733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 489 - 652
Target Start/End: Original strand, 42386634 - 42386808
Alignment:
| Q |
489 |
gttataattggctcatcttcaaacttttcagacaaatgaaaacaaatttctcttccattttt---attt-------agtgtagctaaataaattattt-a |
577 |
Q |
| |
|
|||||| |||| ||||||||||| |||| |||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||| | |
|
|
| T |
42386634 |
gttatatttggttcatcttcaaattttttcgacaaatgaaaacaaaattctcttccatttttcttattttttatacagtgtagctaaataaattatttaa |
42386733 |
T |
|
| Q |
578 |
gactaaacttcaagtagcacacatctaaatacaagtattcattctgattttatatgttgatgtaataatgttttt |
652 |
Q |
| |
|
|||||||| | ||||| ||||||| ||| |||| ||||||| |||||||| || | |||||||||||||||| |
|
|
| T |
42386734 |
gactaaacctaaagtaaaccacatcttaatgtaagttttcattccgattttatttgctaatgtaataatgttttt |
42386808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 249 - 282
Target Start/End: Original strand, 4010590 - 4010623
Alignment:
| Q |
249 |
gtttggtttggtttatgaaccatgcacactccta |
282 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
|
|
| T |
4010590 |
gtttggtttggtttatgaaccatgcacaccccta |
4010623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0232 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0232
Description:
Target: scaffold0232; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 247 - 276
Target Start/End: Complemental strand, 21452 - 21423
Alignment:
| Q |
247 |
tggtttggtttggtttatgaaccatgcaca |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
21452 |
tggtttggtttggtttatgaaccatgcaca |
21423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 249 - 290
Target Start/End: Complemental strand, 7528163 - 7528122
Alignment:
| Q |
249 |
gtttggtttggtttatgaaccatgcacactcctagttataac |
290 |
Q |
| |
|
||||||||||||| ||||| ||||||||| |||||||||||| |
|
|
| T |
7528163 |
gtttggtttggttcatgaatcatgcacacccctagttataac |
7528122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University