View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4541_low_4 (Length: 615)
Name: NF4541_low_4
Description: NF4541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4541_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 491; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 15 - 601
Target Start/End: Original strand, 1628693 - 1629290
Alignment:
| Q |
15 |
tcaatcctaatttatgaaagtttagttacacatgat--------aactgtcataaacaacataattcaaaggacggaagagaaatacataagctgcggtg |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
1628693 |
tcaatcctaatttatgaaagtttagttacacatgataacttgataactgtcataaacaacataattcaaaggacggaagcgaaatacataagttgcggtg |
1628792 |
T |
|
| Q |
107 |
ttgatcctcaaacttgtttccaaaccttcaaaaacacgcacgagtctcgcgcatggacatactactgtggcgttagcaactactcattggtttggtgtgc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1628793 |
ttgatcctcaaacttgtttccaaaccttcaaaaacacgcacgagtctcgcgcatggacatactactgtggcgttagcaactactcattggtttggtgtcc |
1628892 |
T |
|
| Q |
207 |
acctcaagcgtttccttctgcgcctcgcgcatgctgtcgagagatcaaggagatgagcaactgccaaaggcgatgcatggcctcatgcacctcgcgcata |
306 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
1628893 |
acctcaagtgtttccttctgcgcctcgcgcatgctgtcgagagatcaaggagatgagcaactgccacaggcgatgcatggcctcatgcacctcgcgcata |
1628992 |
T |
|
| Q |
307 |
ggacttaattttatatatattttttaaaggacaggatgcttatttgttacttagtttctgacatattgactttttaaacatagatccgtcggatcatcaa |
406 |
Q |
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|||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1628993 |
ggacttaattttatatatatttttaaaatgacaagatgcttatttgttacttagtttctgacatattgactttttaaacatagatccgctggatcatcaa |
1629092 |
T |
|
| Q |
407 |
agttgaacttgttaagtagtacaaaattaaagaatatgaata---atatctctctcaatatacaaattaaagaatattgacacattttctttttagaatt |
503 |
Q |
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| T |
1629093 |
agttgaacttgtaaagtagtacaaaattaaagaatatgaataattatatctctctcaatatacaaattaaagaatattgacacattttcttttaagaatt |
1629192 |
T |
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| Q |
504 |
acaatgaatttaattacagataactatgtagaataattgacttaatgaagagatatagctataccataaaacaaatgatcaaagaccagatgtaaatg |
601 |
Q |
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| T |
1629193 |
acaatgaatttaattacaaataactatgtagaataattgaattaatgaagagatatagctataccaaaatacaaatgatcaaagaccagatgtaaatg |
1629290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 176 - 521
Target Start/End: Complemental strand, 10821778 - 10821438
Alignment:
| Q |
176 |
gcgttagcaactactcattggtttggtgtgcacctcaagcgtttccttctgcgcctcgcgcatgctgtcgagagatcaaggagatgagcaactgccaaag |
275 |
Q |
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| T |
10821778 |
gcgttagcaactcatccttggtttgctatgcacctcatgtgtttccttctgcgcctagcgcgtgctgatgagatatcaaggagatgagcaactgtcacgc |
10821679 |
T |
|
| Q |
276 |
gcgatgcatggcctcatgcacctcgcgcataggacttaattttatatatattttttaaaggacaggatgcttatttgttacttagtttctgacatattga |
375 |
Q |
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|||| |||||||||||||| ||||||||||||||||| || ||| | | ||||| ||| ||| ||| |||||||||||| |||||| ||| ||||||| |
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| T |
10821678 |
gcgacgcatggcctcatgcgcctcgcgcataggactt--ttctat-tttttttttaaaattacaagattcttatttgttacatagtttatgatatattga |
10821582 |
T |
|
| Q |
376 |
ctttttaaacatagatccgtcggatcatcaaagttgaacttgttaagtagtacaaaattaaagaatatg---aataatatctctctcaatatacaaatta |
472 |
Q |
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| T |
10821581 |
ctttttaaacatatatcagttgaatcatcaaaggtgaacttgtaaagttgtaca-----aaggaatatgaataataatatctctctcaatatacaaatta |
10821487 |
T |
|
| Q |
473 |
aagaatattgacacattttctttttagaattacaatgaatttaattaca |
521 |
Q |
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| T |
10821486 |
aagaatattgactcatgttcttacaaaaattacaatgaatttaattaca |
10821438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 105 - 167
Target Start/End: Complemental strand, 10821868 - 10821806
Alignment:
| Q |
105 |
tgttgatcctcaaacttgtttccaaaccttcaaaaacacgcacgagtctcgcgcatggacata |
167 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
10821868 |
tgttgatcctcaaacttgtttccaaaccttcaaaaacatgcacgagtctcgcgcatggacata |
10821806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 498 - 601
Target Start/End: Original strand, 1605891 - 1605992
Alignment:
| Q |
498 |
agaattacaatgaatttaattacagataactatgtagaataattgacttaatgaagagatatagctataccataaaacaaatgatcaaagaccagatgta |
597 |
Q |
| |
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|||||||||||||| ||||||||| | || || ||| ||||| ||| |||||||| ||| |||||| || || | |||||||||||||||||||||| |
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| T |
1605891 |
agaattacaatgaacttaattacaaagaattaagtacaataactgaggcaatgaagaaata--gctatagcacaacataaatgatcaaagaccagatgta |
1605988 |
T |
|
| Q |
598 |
aatg |
601 |
Q |
| |
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|||| |
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| T |
1605989 |
aatg |
1605992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 498 - 601
Target Start/End: Original strand, 18780707 - 18780808
Alignment:
| Q |
498 |
agaattacaatgaatttaattacagataactatgtagaataattgacttaatgaagagatatagctataccataaaacaaatgatcaaagaccagatgta |
597 |
Q |
| |
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|||||||||||||||||||||||| | || || ||| ||||||||| ||||| ||| ||||||||| || || | ||| |||||||||||||||||| |
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| T |
18780707 |
agaattacaatgaatttaattacaaagaattaagtacaataattgaagcaatga--agaaatagctatagcacaacataaaagatcaaagaccagatgta |
18780804 |
T |
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| Q |
598 |
aatg |
601 |
Q |
| |
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|||| |
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| T |
18780805 |
aatg |
18780808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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