View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4541_low_5 (Length: 453)
Name: NF4541_low_5
Description: NF4541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4541_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 11 - 435
Target Start/End: Original strand, 29649792 - 29650216
Alignment:
| Q |
11 |
agaacctgtgtcaaacatcaacaaagttgtgaatggtggtgtgccaatcctcatttcaacagcatatatgttagaaatagttggcacaagtggttgaaaa |
110 |
Q |
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| T |
29649792 |
agaacctgtgtcaaacatcaacaaagttgtgaatggtggtgtgccaatcctcatttcaacagcatatatgttagaaatagttgggacaagtggttgaaaa |
29649891 |
T |
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| Q |
111 |
gtttgtggggatattgcattggtgttgttcatttgatacttaagagcatgaatttttgagagttggactaatttattgtgtttctcttcaagagaaatgt |
210 |
Q |
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| T |
29649892 |
gtttgtggggatattgcattggtgttgttcatttgatacttaagagcatgaatttttgagagttggactaatctattgtgtttctcttcaagagaaatgt |
29649991 |
T |
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| Q |
211 |
ttttgggaaagagcaatgaatcaaagtttactcgtgggattaatttcattgagaaagacatggttcctatgggaatgtagacacaaaataacacaaagag |
310 |
Q |
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| T |
29649992 |
ttttgggaaagagaattgaatcaaagtttactcgtgggattaatttcattgagaaagacatggttcctatgggaatgtagacacaaaataacacaaagag |
29650091 |
T |
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| Q |
311 |
tgttaagaaactaaatgaagaagccattttcattatatgatcaatgtgcttttgtgttatgtttgttaggattgtgaagcaaactagctcttttatacac |
410 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29650092 |
tgttaagaaactaaatgaagaagccatttttattatatgatcaatgtgcttttgtgttatgtttgttaggattgtgaagcaaactagctcttttatacac |
29650191 |
T |
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| Q |
411 |
acacacatggctagggtttcatact |
435 |
Q |
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| T |
29650192 |
acacacatggctagggtttcatact |
29650216 |
T |
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