View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4541_low_8 (Length: 421)
Name: NF4541_low_8
Description: NF4541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4541_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 26608012 - 26608417
Alignment:
| Q |
1 |
tcagtttcagtgttgttctcactgcaaagtcgtctctgaagtctgaacaatgcttagggcaggaagaatgtgtcgttaatgtcaaatgaaattaattctt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
26608012 |
tcagtttcagtgttgttctcactgcaaagtcgtctctgaagtctgaacaatgcttagggcaggaagaatgtgtcgctaatgtcaaatgaaattaattctt |
26608111 |
T |
|
| Q |
101 |
actgtgactagaagtaagcaaatggcaggaagaaagtgctaacaaggtagcaagaccacagcaggaagaagggnnnnnnnnnnnnnnnnnngggggaaag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
26608112 |
actgtgactagaagtaagcaaatggcaggaagaaagtgctaacaaggtagcaagaccacagcaggaagaagggaaaaaatgaaatgaaaaagggggaaag |
26608211 |
T |
|
| Q |
201 |
catagcgatttgggaaaccggcgaagcaggatggcacgaccaacggaaggctgtgaggcaagacgacacagctagttgggtgaaaaaac--gggttgtgt |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
26608212 |
catagcgatttgggaaaccggcgaagcaggatggcacgaccaacggaaggctgtgaggcaagacgacacagctagttgggtgaaaaaacaggggttgtgt |
26608311 |
T |
|
| Q |
299 |
ttcaattagtcaatgatgcgcaagattgcattgcaggacgaagtggcgaaacagtgctgcagaagggagcgtcaagatggcgtggtgagacggaagatca |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
26608312 |
ttcaattagtcaatgatgcgcaagattgcattgcaggacgaagtggcgaaacagtgcagcagaagggagcgtcaagatggcgtggtgagacggaagatca |
26608411 |
T |
|
| Q |
399 |
aaatag |
404 |
Q |
| |
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|||||| |
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| T |
26608412 |
aaatag |
26608417 |
T |
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