View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4542_high_12 (Length: 234)
Name: NF4542_high_12
Description: NF4542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4542_high_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 25011186 - 25010967
Alignment:
| Q |
1 |
ttttaaactgaaactcaccgcacctctctaaggatacataaaaatgagcagacagaagtttacgctgttaccatttttgctttttactagacaagtctgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25011186 |
ttttaaactgaaactcaccgcacctctctaaggatacttaaaaatgagcagacagaagtttacgctgttaccatttttgctttttactagacaagtctgt |
25011087 |
T |
|
| Q |
101 |
ttattctgcaactgactagatgatatttcatttgaatttggctcctttgtaggcgttggaaagatgtgagtattggcgcttgtcggatcagcagggaaaa |
200 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25011086 |
ttattttgcaactgactagatgacatttcatttgaatttggctcctttgtaggcgttggaaagatgtgagtattggcgcttgtcggatcagcagggaaaa |
25010987 |
T |
|
| Q |
201 |
ccccctggcgttatgggatg |
220 |
Q |
| |
|
|||||||| ||||||||||| |
|
|
| T |
25010986 |
ccccctggtgttatgggatg |
25010967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University