View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4542_high_14 (Length: 222)
Name: NF4542_high_14
Description: NF4542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4542_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 45514999 - 45514788
Alignment:
| Q |
1 |
atgaactgatgatgatgttaattttcccaatgtcattccttcaaggtttcctatgcatcgaggtattgaaccttgcaatttgtttctagagaggtccaga |
100 |
Q |
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| T |
45514999 |
atgaactgatgatgatgttgattttcccaatgtcattccttcaaggtttcctatgcatcgaggtattgaaccttgcaatttgtttctagagaggtccaga |
45514900 |
T |
|
| Q |
101 |
atttgtagtgatttgagttgacatagttgtgaaggaatactagcgctaaacatattttgtcgcaatataagaatttgcaatgaagggaaggtgtttgctg |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45514899 |
atttggagtgatttgagttgacatagttgtgaaggaatactagcgctaaacatattttgtcgcaatataagaatttgcaatgaagggaaggtgtttgctg |
45514800 |
T |
|
| Q |
201 |
tccatgatgatg |
212 |
Q |
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|||||||||||| |
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| T |
45514799 |
tccatgatgatg |
45514788 |
T |
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