View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4542_high_15 (Length: 220)

Name: NF4542_high_15
Description: NF4542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4542_high_15
NF4542_high_15
[»] chr3 (15 HSPs)
chr3 (15-201)||(2760111-2760297)
chr3 (15-201)||(2819457-2819643)
chr3 (20-199)||(2749894-2750073)
chr3 (37-199)||(5413785-5413947)
chr3 (15-199)||(2791219-2791397)
chr3 (38-199)||(2808166-2808327)
chr3 (30-199)||(2854880-2855049)
chr3 (20-199)||(2837660-2837839)
chr3 (16-199)||(2769968-2770145)
chr3 (22-199)||(2798260-2798437)
chr3 (38-118)||(3356444-3356524)
chr3 (35-94)||(3321307-3321366)
chr3 (15-96)||(3303000-3303081)
chr3 (20-96)||(3201934-3202010)
chr3 (30-118)||(3722512-3722600)
[»] scaffold0691 (1 HSPs)
scaffold0691 (20-193)||(5212-5385)
[»] chr1 (1 HSPs)
chr1 (38-89)||(4257719-4257770)


Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 15 - 201
Target Start/End: Complemental strand, 2760297 - 2760111
Alignment:
Q  15 catcatcatgcatacaatggcagaaactcaaatccttcatttttctaatgatcacttcccgcaataaatcatggacttgacatgtatgtactttcccttc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2760297 catcatcatgcatacaatggcagaaactcaaatccttcatttttctaatgatcacttcccgcaataaatcatggacttgacatgtatgtactttcccttc 2760198  T
Q  115 aaagttaacatccgagacttggactagacttctctgaatcaattcagacaagtactcctctgcaacttgctctggagttcttctccc 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2760197 aaagttaacatccgagacttggactagacttctctgaatcaattcagacaagtactcctctgcaacttgctctggagttcttctccc 2760111  T

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Target: chr3; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 15 - 201
Target Start/End: Complemental strand, 2819643 - 2819457
Alignment:
Q  15 catcatcatgcatacaatggcagaaactcaaatccttcatttttctaatgatcacttcccgcaataaatcatggacttgacatgtatgtactttcccttc 114  Q
    |||||||||||| |||||| || || || |||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||  ||||| |||||    
T  2819643 catcatcatgcacacaatgacaaaatcttaaatcctttatttttgtaatgatcacttcccgcaataaatcatggacttgacatttatcaactttaccttc 2819544  T
Q  115 aaagttaacatccgagacttggactagacttctctgaatcaattcagacaagtactcctctgcaacttgctctggagttcttctccc 201  Q
    ||||| ||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2819543 aaagtcaacatccgagacttgaaccagacttctctgaatcagttcagacaagtactcctctgcaacttgctctggagttcttctccc 2819457  T

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Target: chr3; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 20 - 199
Target Start/End: Complemental strand, 2750073 - 2749894
Alignment:
Q  20 tcatgcatacaatggcagaaactcaaatccttcatttttctaatgatcacttcccgcaataaatcatggacttgacatgtatgtactttcccttcaaagt 119  Q
    |||||||| ||||| | |||| | ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| || ||||| |||||||||     
T  2750073 tcatgcatgcaatgaccgaaatttaaatccttcatttttctaatgatcaattcccgcattaaatcatggacttgacatgtttgaacttttccttcaaagc 2749974  T
Q  120 taacatccgagacttggactagacttctctgaatcaattcagacaagtactcctctgcaacttgctctggagttcttctc 199  Q
     |||||  ||||| || || | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2749973 caacatttgagacctgaaccaaacttctctgaatcaattcagacaagtactcttctgcaacttgctctggagttcttctc 2749894  T

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Target: chr3; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 37 - 199
Target Start/End: Complemental strand, 5413947 - 5413785
Alignment:
Q  37 gaaactcaaatccttcatttttctaatgatcacttcccgcaataaatcatggacttgacatgtatgtactttcccttcaaagttaacatccgagacttgg 136  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| || ||||| |||||||||  |||||  ||||| ||     
T  5413947 gaaacttaaatccttcatttttctaatgatcacttcccgcagtaaatcatgtacttgacatgtttgaacttttccttcaaagccaacatttgagacctga 5413848  T
Q  137 actagacttctctgaatcaattcagacaagtactcctctgcaacttgctctggagttcttctc 199  Q
    || |||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  5413847 accagacttctttgaatcaattcagacaagtattcctctgcaacttgctccggagttcttctc 5413785  T

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Target: chr3; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 15 - 199
Target Start/End: Complemental strand, 2791397 - 2791219
Alignment:
Q  15 catcatcatgcatacaatggcagaaactcaaatccttcatttttctaatgatcacttcccgcaataaatcatggacttgacatgtatgtactttcccttc 114  Q
    |||||||||||| |||||| |||||||| || |||||||||||||| ||||  |||||||  ||||||||||||||||||||||| || |||||||||||    
T  2791397 catcatcatgcacacaatgacagaaacttaagtccttcatttttctgatgagaacttcccagaataaatcatggacttgacatgtttgaactttcccttc 2791298  T
Q  115 aaagttaacatccgagacttggactagacttctctgaatcaattcagacaagtactcctctgcaacttgctctggagttcttctc 199  Q
          ||||   |||||||| |||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  2791297 ------aacaattgagacttgaactaaacttctatgaatcaattcagacaagtactcctctgcaacttcctctggagttcgtctc 2791219  T

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Target: chr3; HSP #6
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 38 - 199
Target Start/End: Complemental strand, 2808327 - 2808166
Alignment:
Q  38 aaactcaaatccttcatttttctaatgatcacttcccgcaataaatcatggacttgacatgtatgtactttcccttcaaagttaacatccgagacttgga 137  Q
    ||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||| | || ||||| |||||||||  |||||  ||||| || |    
T  2808327 aaacttaaatccttcattttcctaatgatcacttgccgcaataaatcatggacttgacatatttgaacttttccttcaaagccaacatttgagacctgaa 2808228  T
Q  138 ctagacttctctgaatcaattcagacaagtactcctctgcaacttgctctggagttcttctc 199  Q
    | |||||||| |||||||||||| ||||||| |||||||| |  ||||||||||||||||||    
T  2808227 ccagacttctgtgaatcaattcatacaagtattcctctgctatatgctctggagttcttctc 2808166  T

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Target: chr3; HSP #7
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 30 - 199
Target Start/End: Original strand, 2854880 - 2855049
Alignment:
Q  30 aatggcagaaactcaaatccttcatttttctaatgatcacttcccgcaataaatcatggacttgacatgtatgtactttcccttcaaagttaacatccga 129  Q
    |||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||  |||||  ||    
T  2854880 aatgacagaaacttaaattcttcatttttctaatgatcacttcccgcaataaatcatggacttgacatgttttaactttcccttcaaagccaacatttga 2854979  T
Q  130 gacttggactagacttctctgaatcaattcagacaagtactcctctgcaacttgctctggagttcttctc 199  Q
    ||| || |  |||||||| ||||||||||| |||||||| ||||| || ||||||||   ||||||||||    
T  2854980 gacctgaatcagacttctgtgaatcaattctgacaagtattcctcagccacttgctccaaagttcttctc 2855049  T

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Target: chr3; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 199
Target Start/End: Original strand, 2837660 - 2837839
Alignment:
Q  20 tcatgcatacaatggcagaaactcaaatccttcatttttctaatgatcacttcccgcaataaatcatggacttgacatgtatgtactttcccttcaaagt 119  Q
    ||||||| | |||| |||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |  |||||||||||||||     
T  2837660 tcatgcacaaaatgacagaaacttaaattcttcatttttctaatgataacttcccgcaataaatcatggacttgacatgttttaactttcccttcaaagc 2837759  T
Q  120 taacatccgagacttggactagacttctctgaatcaattcagacaagtactcctctgcaacttgctctggagttcttctc 199  Q
     |||||  ||||| || |  |||||||| ||||||||||| |||||||| ||||| || ||||||||   ||||||||||    
T  2837760 caacatttgagacctgaatcagacttctgtgaatcaattctgacaagtattcctcagccacttgctccaaagttcttctc 2837839  T

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Target: chr3; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 199
Target Start/End: Complemental strand, 2770145 - 2769968
Alignment:
Q  16 atcatcatgcatacaatggcagaaactcaaatccttcatttttctaatgatcacttcccgcaataaatcatggacttgacatgtatgtactttcccttca 115  Q
    ||||||||||| |||||| |||||||| || |||||||||||| ||||||  |||||| | ||||||||||||||||||||||| || | |||||||||     
T  2770145 atcatcatgcacacaatgacagaaacttaagtccttcatttttttaatgaaaacttcctggaataaatcatggacttgacatgtttgaattttcccttc- 2770047  T
Q  116 aagttaacatccgagacttggactagacttctctgaatcaattcagacaagtactcctctgcaacttgctctggagttcttctc 199  Q
         ||||   |||||||| |||| |||||| ||||||||||||||||||||||||||||||||||  ||||| |||| ||||    
T  2770046 -----aacaattgagacttgaactaaacttctatgaatcaattcagacaagtactcctctgcaacttcttctggggttcgtctc 2769968  T

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Target: chr3; HSP #10
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 22 - 199
Target Start/End: Complemental strand, 2798437 - 2798260
Alignment:
Q  22 atgcatacaatggcagaaactcaaatccttcatttttctaatgatcacttcccgcaataaatcatggacttgacatgtatgtactttcccttcaaagtta 121  Q
    ||||| |||||| ||||| || |||||||||||||||||||||| ||||||||| ||||||||||||||| | ||||| || ||||||||||||||   |    
T  2798437 atgcacacaatgacagaatcttaaatccttcatttttctaatgagcacttcccggaataaatcatggactcggcatgtttgaactttcccttcaaatcca 2798338  T
Q  122 acatccgagacttggactagacttctctgaatcaattcagacaagtactcctctgcaacttgctctggagttcttctc 199  Q
    ||||  ||||| || || | |||||| ||||| | ||||||||| ||||| |||||||||  |||| |||||| ||||    
T  2798337 acatttgagacctgaaccatacttctgtgaattagttcagacaaatactcttctgcaactatctcttgagttcgtctc 2798260  T

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Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 118
Target Start/End: Original strand, 3356444 - 3356524
Alignment:
Q  38 aaactcaaatccttcatttttctaatgatcacttcccgcaataaatcatggacttgacatgtatgtactttcccttcaaag 118  Q
    ||||| ||||| ||||||||| |||||| |||||| ||||| |||||||||||||||||| | |  |||||||| ||||||    
T  3356444 aaacttaaatctttcatttttttaatgaccacttcacgcaacaaatcatggacttgacatcttttaactttcccatcaaag 3356524  T

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Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 94
Target Start/End: Original strand, 3321307 - 3321366
Alignment:
Q  35 cagaaactcaaatccttcatttttctaatgatcacttcccgcaataaatcatggacttga 94  Q
    |||||||| ||||| ||||||||||||| ||||||||| ||||| |||||||| ||||||    
T  3321307 cagaaacttaaatctttcatttttctaaggatcacttcacgcaacaaatcatgaacttga 3321366  T

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Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 3303000 - 3303081
Alignment:
Q  15 catcatcatgcatacaatggcagaaactcaaatccttcatttttctaatgatcacttcccgcaataaatcatggacttgaca 96  Q
    |||| ||||||||  |||| ||||||||   ||| ||||||||| ||||||||||||| ||||| | |||||||||||||||    
T  3303000 catcttcatgcattaaatgacagaaactttgatctttcatttttttaatgatcacttcacgcaacacatcatggacttgaca 3303081  T

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Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 3202010 - 3201934
Alignment:
Q  20 tcatgcatacaatggcagaaactcaaatccttcatttttctaatgatcacttcccgcaataaatcatggacttgaca 96  Q
    ||||||||  ||||||| || || ||||| | ||||||||||| ||||||||| ||||| |||| ||||||||||||    
T  3202010 tcatgcattaaatggcaaaagcttaaatcttgcatttttctaaggatcacttcacgcaacaaattatggacttgaca 3201934  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 118
Target Start/End: Complemental strand, 3722600 - 3722512
Alignment:
Q  30 aatggcagaaactcaaatccttcatttttctaatgatcacttcccgcaataaatcatggacttgacatgtatgtactttcccttcaaag 118  Q
    ||||||| ||||| ||||| ||||||||| |||| | || ||| | ||| |||||||||||||||||| | |  |||||||| ||||||    
T  3722600 aatggcaaaaactaaaatctttcatttttttaataaccatttcacacaacaaatcatggacttgacatcttttaactttcccatcaaag 3722512  T

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Target: scaffold0691 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 20 - 193
Target Start/End: Original strand, 5212 - 5385
Alignment:
Q  20 tcatgcatacaatggcagaaactcaaatccttcatttttctaatgatcacttcccgcaataaatcatggacttgacatgtatgtactttcccttcaaagt 119  Q
    ||||||| |||||| || ||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||| ||||||     
T  5212 tcatgcacacaatgacaaaaagttaaatccttcatttttctaatgatcacttcacgcaataaatcatggacttgacatgtttgaactttcccctcaaagc 5311  T
Q  120 taacatccgagacttggactagacttctctgaatcaattcagacaagtactcctctgcaacttgctctggagtt 193  Q
     |||||  ||||| || || |||||||| ||||||||||||||||||||||| |||||||||||||| ||||||    
T  5312 caacatttgagacctgaaccagacttctgtgaatcaattcagacaagtactcatctgcaacttgctcgggagtt 5385  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 89
Target Start/End: Complemental strand, 4257770 - 4257719
Alignment:
Q  38 aaactcaaatccttcatttttctaatgatcacttcccgcaataaatcatgga 89  Q
    ||||||||||||||||||||||| ||||||| ||| || || ||||||||||    
T  4257770 aaactcaaatccttcatttttctcatgatcatttctcgtaacaaatcatgga 4257719  T

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