View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4542_high_5 (Length: 377)

Name: NF4542_high_5
Description: NF4542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4542_high_5
NF4542_high_5
[»] chr4 (16 HSPs)
chr4 (13-285)||(6812992-6813262)
chr4 (14-165)||(6591910-6592061)
chr4 (20-202)||(6625500-6625686)
chr4 (29-163)||(6536750-6536884)
chr4 (13-201)||(6648322-6648516)
chr4 (13-170)||(6712915-6713072)
chr4 (13-178)||(6793618-6793787)
chr4 (13-187)||(6750122-6750299)
chr4 (21-201)||(6501000-6501179)
chr4 (13-201)||(6549035-6549225)
chr4 (21-157)||(6716687-6716823)
chr4 (24-165)||(6770704-6770845)
chr4 (21-154)||(6833577-6833710)
chr4 (290-353)||(6813321-6813384)
chr4 (27-96)||(10034985-10035054)
chr4 (27-97)||(7889435-7889505)
[»] scaffold0552 (1 HSPs)
scaffold0552 (13-203)||(464-653)
[»] scaffold0373 (1 HSPs)
scaffold0373 (13-165)||(12534-12686)
[»] scaffold0813 (1 HSPs)
scaffold0813 (21-157)||(1853-1989)


Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 13 - 285
Target Start/End: Original strand, 6812992 - 6813262
Alignment:
Q  13 tcatcaagaaggtcagtttggaaaagctttggaagatcttatatcaacaatctcagtagatgaatccacaaagagtaattggaaaagagaactctttaat 112  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||   |||    
T  6812992 tcatcaagaaggtcaatttggaaaagctttggaagatcttatgtcaacaatctcaatagatgaatccacaaagagtaattggaaaagagaactc---aat 6813088  T
Q  113 attggtggcatagcagggtttgtactcctagattccaggttatttattta-tttcttttagaatattgtttgtgatgctttaaaattcttcaattttaag 211  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||| ||||||||||||||||||| |||||||    
T  6813089 attggtggcatagcagggtttgtactcctagattccagtttatttatttattttctcttagaatattgtttgggatgctttaaaattcttcatttttaag 6813188  T
Q  212 ccttggtggtgtaaaaatatctgttaatttaaaatcaatcttctttagaaataatcatttttagaatttttcat 285  Q
     || ||||||| ||||||||||||||||||||||||| ||||| ||| |||| ||||| |||||||||||||||    
T  6813189 tctaggtggtgcaaaaatatctgttaatttaaaatcactcttcattaaaaattatcatatttagaatttttcat 6813262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 14 - 165
Target Start/End: Complemental strand, 6592061 - 6591910
Alignment:
Q  14 catcaagaaggtcagtttggaaaagctttggaagatcttatatcaacaatctcagtagatgaatccacaaagagtaattggaaaagagaactctttaata 113  Q
    ||||| |||||||||||||| ||| |||| || ||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||| |||    
T  6592061 catcaggaaggtcagtttgggaaatcttttgatgatcttatatcaaaaaattcagtagatgaatccacaaagagtaattggaaaagagaactctttgata 6591962  T
Q  114 ttggtggcatagcagggtttgtactcctagattccaggttatttatttattt 165  Q
    ||||||| |||||||||||||| ||| |||||||||||||||||||||||||    
T  6591961 ttggtggaatagcagggtttgtcctcatagattccaggttatttatttattt 6591910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 20 - 202
Target Start/End: Complemental strand, 6625686 - 6625500
Alignment:
Q  20 gaaggtcagtttggaaaagctttggaagatcttatatcaacaatctcagtagatgaatccacaaagagtaattggaaaagagaactctttaatattggtg 119  Q
    ||||||||||||||||||||||| ||| | |||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||  ||||||||     
T  6625686 gaaggtcagtttggaaaagcttttgaaaaacttataccaacaatctcagtggatgaatccacaaagagtaattggaaaagagcactcttcgatattggta 6625587  T
Q  120 gcatagcagggtttgtactcctagattccaggttatt----tatttatttcttttagaatattgtttgtgatgctttaaaattcttc 202  Q
    |||||||||| ||||||||| ||||||||||||||||    | | | | ||| ||||||||||||||||||| |||| |||||||||    
T  6625586 gcatagcaggttttgtactcatagattccaggttatttttctctctctctctcttagaatattgtttgtgatcctttgaaattcttc 6625500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 29 - 163
Target Start/End: Complemental strand, 6536884 - 6536750
Alignment:
Q  29 tttggaaaagctttggaagatcttatatcaacaatctcagtagatgaatccacaaagagtaattggaaaagagaactctttaatattggtggcatagcag 128  Q
    ||||||||||| || ||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||| ||| || ||||||||||||||||||    
T  6536884 tttggaaaagcctttgaagatcttatatcaacaatctcggtggatgaatccacaaagagtaattggagaagagacctcattgatattggtggcatagcag 6536785  T
Q  129 ggtttgtactcctagattccaggttatttatttat 163  Q
    |||||||||||  ||||||||||||||||||||||    
T  6536784 ggtttgtactcaaagattccaggttatttatttat 6536750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 6648322 - 6648516
Alignment:
Q  13 tcatcaagaaggtcagtttggaaaagctttggaagatcttatatcaacaatctcagtagatgaatccacaaagagtaattggaaaagagaactctttaat 112  Q
    |||||| |||||||||||||||||| |||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||| || ||    
T  6648322 tcatcaggaaggtcagtttggaaaatcttttgaagatcttatctcaacaatctcagtggatgaatccacaaagagtaattggaaaagagacctcattgat 6648421  T
Q  113 attggtggcatagcagggtttgtactcctagattccagg-----ttatttattta-tttcttttagaatattgtttgtgatgctttaaaattctt 201  Q
    ||||| ||||||||||| |||||||||  ||||||||||     || ||| |||| ||||| || ||| |||||||||| |||||||||||||||    
T  6648422 attggcggcatagcaggctttgtactcaaagattccaggtcattttctttttttattttctcttggaaaattgtttgtggtgctttaaaattctt 6648516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 13 - 170
Target Start/End: Original strand, 6712915 - 6713072
Alignment:
Q  13 tcatcaagaaggtcagtttggaaaagctttggaagatcttatatcaacaatctcagtagatgaatccacaaagagtaattggaaaagagaactctttaat 112  Q
    |||||||||||||||||||||||||||||||||||||||||| | |  ||||||||| ||||||||||||||||||||||||| |||||| ||| || ||    
T  6712915 tcatcaagaaggtcagtttggaaaagctttggaagatcttatcttagaaatctcagtggatgaatccacaaagagtaattggagaagagacctcattgat 6713014  T
Q  113 attggtggcatagcagggtttgtactcctagattccaggttatttatttatttctttt 170  Q
    |||||||||| ||  |||||| || ||  |||||||||||||||||||||||| ||||    
T  6713015 attggtggcaaagatgggtttatagtcacagattccaggttatttatttatttatttt 6713072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 13 - 178
Target Start/End: Original strand, 6793618 - 6793787
Alignment:
Q  13 tcatcaagaaggtcagtttggaaaagctttggaagatcttatatcaacaatctcagtagatgaatccacaaagagtaattggaaaagagaactctttaat 112  Q
    |||||| |||||||  ||||| |||||||| || ||||||||||| ||||| || || |||||||||||||||| |||||||||||| ||||||||| ||    
T  6793618 tcatcaggaaggtccatttgggaaagcttttgatgatcttatatctacaatttccgtggatgaatccacaaagactaattggaaaagtgaactctttgat 6793717  T
Q  113 attggtggcatagcagggtttgtactcctagattccaggttatttatttattt----cttttagaatatt 178  Q
    |||||||| |||||||||||||| ||| ||||||||||||||||| |||||||    |||||||||||||    
T  6793718 attggtggtatagcagggtttgttctcatagattccaggttatttgtttatttttgtcttttagaatatt 6793787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 13 - 187
Target Start/End: Original strand, 6750122 - 6750299
Alignment:
Q  13 tcatcaagaaggtcagtttggaaaagctttggaagatcttatatcaacaatctcagtagatgaatccacaaagagtaattggaaaagagaactctttaat 112  Q
    ||||||| ||||||||||||| |||| ||| || ||||||||||||| ||||||||| |||||||| |||||||||||||||| |||||| ||| || ||    
T  6750122 tcatcaaaaaggtcagtttgggaaaggttttgacgatcttatatcaaaaatctcagtggatgaatcaacaaagagtaattggagaagagacctcattgat 6750221  T
Q  113 attggtggcatagcagggtttgtactcctagattccagg---ttatttatttatttcttttagaatattgtttgtgat 187  Q
    |||||||||| ||| |||||||| ||| |||||||||||   || ||| ||| ||||||||||||||||||| |||||    
T  6750222 attggtggcacagctgggtttgtcctcatagattccaggtttttttttttttttttcttttagaatattgttggtgat 6750299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 21 - 201
Target Start/End: Complemental strand, 6501179 - 6501000
Alignment:
Q  21 aaggtcagtttggaaaagctttggaagatcttatatcaacaatctcagtagatgaatccacaaagagtaattggaaaagagaactctttaatattggtgg 120  Q
    ||||| |||||||||||||||| ||||| |||||||||||||||||||| ||||| || || |||||| |||||| |||||| |||  | ||||||| ||    
T  6501179 aaggtaagtttggaaaagcttttgaagaacttatatcaacaatctcagtggatgagtctaccaagagtgattggagaagagacctcagtgatattggggg 6501080  T
Q  121 catagcagggtttgtactcctagattccaggttatttatttatttcttttagaatattgtttgtgatgctttaaaattctt 201  Q
    |||||||||  |||||||| | |||||||||||||||   | ||||| ||||||||||||| |||||||||||||||||||    
T  6501079 catagcaggcattgtactcattgattccaggttatttgaat-tttctcttagaatattgttagtgatgctttaaaattctt 6501000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 6549225 - 6549035
Alignment:
Q  13 tcatcaagaaggtcagtttggaaaagctttggaagatcttatatcaacaatctcagtagatgaatccacaaagagtaattggaaaagagaactctttaat 112  Q
    ||||||| ||||||| ||||| |||| ||| || ||||||||||||| || |||||| |||||||| |||||||||||||||| |||||| |||||| ||    
T  6549225 tcatcaaaaaggtcattttgggaaaggttttgatgatcttatatcaaaaacctcagttgatgaatcaacaaagagtaattggagaagagagctctttgat 6549126  T
Q  113 attggtggcatagcagggtttgtactcctagattccaggttatttattt--atttcttttagaatattgtttgtgatgctttaaaattctt 201  Q
    ||| |||||||| |||||||||| ||| || |||| |||||||||||||   |||| |||| | ||||||| ||||| |||||||||||||    
T  6549125 atttgtggcatatcagggtttgtcctcataaattcaaggttatttattttattttcctttacagtattgttggtgattctttaaaattctt 6549035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 21 - 157
Target Start/End: Original strand, 6716687 - 6716823
Alignment:
Q  21 aaggtcagtttggaaaagctttggaagatcttatatcaacaatctcagtagatgaatccacaaagagtaattggaaaagagaactctttaatattggtgg 120  Q
    |||||| ||||||||||||||| ||||| ||| ||||||| |||||||| |||||||||||| | |||||||||| |||| |||||||| ||||||||||    
T  6716687 aaggtcggtttggaaaagcttttgaagaacttttatcaactatctcagtggatgaatccacatatagtaattggagaagacaactctttgatattggtgg 6716786  T
Q  121 catagcagggtttgtactcctagattccaggttattt 157  Q
    |||||| |||||||||||  ||| |||||||| ||||    
T  6716787 catagctgggtttgtactagtaggttccaggtaattt 6716823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 24 - 165
Target Start/End: Original strand, 6770704 - 6770845
Alignment:
Q  24 gtcagtttggaaaagctttggaagatcttatatcaacaatctcagtagatgaatccacaaagagtaattggaaaagagaactctttaatattggtggcat 123  Q
    |||||||||| |||| ||| || ||||||||||||| ||||||||| |||||||||||||||||||| |||| ||| ||| ||||  ||||| |||||||    
T  6770704 gtcagtttgggaaaggttttgatgatcttatatcaaaaatctcagtggatgaatccacaaagagtaactggagaagggaaatcttcgatatttgtggcat 6770803  T
Q  124 agcagggtttgtactcctagattccaggttatttatttattt 165  Q
    | |||| |||   ||| ||||||||||||||| |||||||||    
T  6770804 atcaggttttaccctcatagattccaggttatgtatttattt 6770845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 21 - 154
Target Start/End: Original strand, 6833577 - 6833710
Alignment:
Q  21 aaggtcagtttggaaaagctttggaagatcttatatcaacaatctcagtagatgaatccacaaagagtaattggaaaagagaactctttaatattggtgg 120  Q
    |||||| |||||||||||||||  || |  | ||||| | ||||||| | |||||||||| |||||||||||||| |||||| |||||| ||||||||||    
T  6833577 aaggtcggtttggaaaagcttttaaaaagttgatatcgaaaatctcaatggatgaatccaaaaagagtaattggagaagagatctctttgatattggtgg 6833676  T
Q  121 catagcagggtttgtactcctagattccaggtta 154  Q
    |||||| |||||||||||| ||| ||||||||||    
T  6833677 catagctgggtttgtactcttaggttccaggtta 6833710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 290 - 353
Target Start/End: Original strand, 6813321 - 6813384
Alignment:
Q  290 atgattacttctttaaagcttctgcttctaactttaaaaaagcttcagaaaaatgacaacatat 353  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  6813321 atgattacttctttaaagcttctgcttctaacttcaaaaaagcttcagaaaaatgacaacatat 6813384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 27 - 96
Target Start/End: Original strand, 10034985 - 10035054
Alignment:
Q  27 agtttggaaaagctttggaagatcttatatcaacaatctcagtagatgaatccacaaagagtaattggaa 96  Q
    |||||||| ||||||| ||| |||||||||||||||| ||||| ||||||| ||||||||| ||||||||    
T  10034985 agtttggagaagcttttgaatatcttatatcaacaatatcagtggatgaatacacaaagaggaattggaa 10035054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 7889505 - 7889435
Alignment:
Q  27 agtttggaaaagctttggaagatcttatatcaacaatctcagtagatgaatccacaaagagtaattggaaa 97  Q
    |||||||||||||||| |||  |||| |||| ||||  ||||| ||||||| ||||||||| |||||||||    
T  7889505 agtttggaaaagcttttgaatgtcttctatctacaaaatcagtggatgaatacacaaagagaaattggaaa 7889435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0552 (Bit Score: 131; Significance: 7e-68; HSPs: 1)
Name: scaffold0552
Description:

Target: scaffold0552; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 13 - 203
Target Start/End: Original strand, 464 - 653
Alignment:
Q  13 tcatcaagaaggtcagtttggaaaagctttggaagatcttatatcaacaatctcagtagatgaatccacaaagagtaattggaaaagagaactctttaat 112  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||   |||    
T  464 tcatcaagaaggtcaatttggaaaagctttggaagatcttatgtcaacaatctcaatagatgaatccacaaagagtaattggaaaagagaactc---aat 560  T
Q  113 attggtggcatagcagggtttgtactcctagattccaggttatttattta-tttcttttagaatattgt-ttgtgatgctttaaaattcttca 203  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||| |||||||| | | |||||||||||||||||||    
T  561 attggtggcatagcagggtttgtactcctagattccagtttatttatttattttctcttacaatattgtctcgggatgctttaaaattcttca 653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 13 - 165
Target Start/End: Complemental strand, 12686 - 12534
Alignment:
Q  13 tcatcaagaaggtcagtttggaaaagctttggaagatcttatatcaacaatctcagtagatgaatccacaaagagtaattggaaaagagaactctttaat 112  Q
    |||||| |||||||  ||||| |||||||| || ||||||||||| ||||| || || ||||||||| |||||| |||||||||||| ||||||||| ||    
T  12686 tcatcaggaaggtccatttgggaaagcttttgatgatcttatatctacaatttccgtggatgaatccccaaagactaattggaaaagtgaactctttgat 12587  T
Q  113 attggtggcatagcagggtttgtactcctagattccaggttatttatttattt 165  Q
    |||||||| |||||||||||||| ||| ||||||||||||||||| |||||||    
T  12586 attggtggtatagcagggtttgttctcatagattccaggttatttgtttattt 12534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0813 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0813
Description:

Target: scaffold0813; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 21 - 157
Target Start/End: Complemental strand, 1989 - 1853
Alignment:
Q  21 aaggtcagtttggaaaagctttggaagatcttatatcaacaatctcagtagatgaatccacaaagagtaattggaaaagagaactctttaatattggtgg 120  Q
    |||||| ||||||||||||||| ||||| ||| ||||||| |||||||| |||||||||||| | |||||||||| |||| |||||||| ||||||||||    
T  1989 aaggtcggtttggaaaagcttttgaagaacttttatcaactatctcagtggatgaatccacatatagtaattggagaagacaactctttgatattggtgg 1890  T
Q  121 catagcagggtttgtactcctagattccaggttattt 157  Q
    |||||| |||||||||||  ||| |||||||| ||||    
T  1889 catagctgggtttgtactagtaggttccaggtaattt 1853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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