View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4542_high_7 (Length: 304)
Name: NF4542_high_7
Description: NF4542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4542_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 10078828 - 10078531
Alignment:
| Q |
1 |
acctggggatggaatatgagctgaactacctccatatggactgcttgcattgttcattgaattttgctgtctagcgttcatagagttctggtggagaagt |
100 |
Q |
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| T |
10078828 |
acctggggatggaatatgagctgaactacctccatatggactgcttgcattgttcattgaattttgctgtctagcgttcatagagttctggtggagaagt |
10078729 |
T |
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| Q |
101 |
ccaacaatggtgcttgtggtggtcgatgcagatgctgaattgacattgttatttacacttaccacaccattgttagaagggacttgcatagcagcagctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10078728 |
ccaacaatggtgcttgtggtggtcgatgcagatgctgaattgacattgttatttacacttaccacaccattgttagaagggacttgcatagcagcagctt |
10078629 |
T |
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| Q |
201 |
gcacagagttttgatcaccatttgagttgggggccaccatatgctgctgttgctgctgtaattgttcttcagactgttgcgcctgatgatgatgtcca |
298 |
Q |
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| T |
10078628 |
gcacagagttttgatcaccatttgagttgggggccaccatatgctgttgttgctgctgtaattgatcttcagactgttgcgcctgattatgatgtcca |
10078531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 5 - 228
Target Start/End: Original strand, 40776098 - 40776318
Alignment:
| Q |
5 |
ggggatggaatatgagctgaactacctccatatggactgcttgcattgttcattgaattttgctgtctagcgttcatagagttctggtggagaagtccaa |
104 |
Q |
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||||||||||| ||| | ||| |||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||| |||||||||||||||| |
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| T |
40776098 |
ggggatggaatctgaacagaattacctccatatggactgcttgcattgttcattgaattt---tgtctagaattcacagagttttggtggagaagtccaa |
40776194 |
T |
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| Q |
105 |
caatggtgcttgtggtggtcgatgcagatgctgaattgacattgttatttacacttaccacaccattgttagaagggacttgcatagcagcagcttgcac |
204 |
Q |
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|||| ||||||||||| || ||||| || || || |||||| |||||||||| |||| ||||||| | |||| | |||||| | |||||||||||| |
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| T |
40776195 |
caatagtgcttgtggttgttgatgcggacgccgagttgacagaactatttacactaaccataccattgctggaagcaatttgcatggaagcagcttgcac |
40776294 |
T |
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| Q |
205 |
agagttttgatcaccatttgagtt |
228 |
Q |
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| T |
40776295 |
tgggttttgatcgccatttgagtt |
40776318 |
T |
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