View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4542_high_8 (Length: 260)

Name: NF4542_high_8
Description: NF4542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4542_high_8
NF4542_high_8
[»] chr4 (19 HSPs)
chr4 (1-260)||(6834007-6834266)
chr4 (1-260)||(6750680-6750939)
chr4 (1-260)||(6500223-6500482)
chr4 (1-260)||(6535527-6535786)
chr4 (1-260)||(6672488-6672747)
chr4 (1-260)||(6756298-6756557)
chr4 (1-260)||(6813607-6813866)
chr4 (33-257)||(6725766-6725990)
chr4 (1-257)||(6648891-6649147)
chr4 (1-257)||(6713647-6713903)
chr4 (1-260)||(6624304-6624563)
chr4 (1-260)||(6794277-6794536)
chr4 (1-236)||(6547778-6548013)
chr4 (1-260)||(6589912-6590171)
chr4 (26-226)||(8412730-8412930)
chr4 (199-239)||(6550700-6550740)
chr4 (199-239)||(6792140-6792180)
chr4 (199-239)||(6503827-6503867)
chr4 (199-239)||(6646819-6646859)
[»] scaffold0373 (1 HSPs)
scaffold0373 (1-260)||(11767-12027)
[»] scaffold0729 (1 HSPs)
scaffold0729 (199-239)||(6449-6489)
[»] chr3 (1 HSPs)
chr3 (202-257)||(32412947-32413002)
[»] chr6 (5 HSPs)
chr6 (171-236)||(5692169-5692234)
chr6 (199-239)||(5104958-5104998)
chr6 (199-239)||(5133991-5134031)
chr6 (199-239)||(5368336-5368376)
chr6 (199-239)||(5423629-5423669)


Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 6834266 - 6834007
Alignment:
Q  1 tcatcaagcacaaaaagcacccttttctgagcaagtctttgcttcaatataattttccctgattcgatgtcatgtatcttggatgttgttgttttgtaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6834266 tcatcaagcacaaaaagcacccttttctgagcaagtctttgcttcaatataattttccctgattcgatgtcatgtatcttggatgttgttgttttgtaaa 6834167  T
Q  101 catcacaaagtacctgttgctgcagtgaaactagattagtatgtgtctcccagaattcccgtacacccaaaaggaagctcattccctcaaatttgctccc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6834166 catcacaaagtacctgttgctgcagtgaaactagattagtatgtgtctcccagaattcccgtacacccaaaaggaagctcattccctcaaatttgctccc 6834067  T
Q  201 aatttgattataaatggctttggcaatggttgttttacctgtaccccccattccccatat 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6834066 aatttgattataaatggctttggcaatggttgttttacctgtaccccccattccccatat 6834007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 6750939 - 6750680
Alignment:
Q  1 tcatcaagcacaaaaagcacccttttctgagcaagtctttgcttcaatataattttccctgattcgatgtcatgtatcttggatgttgttgttttgtaaa 100  Q
    ||||||||||||| ||| ||||| ||||| ||||||||||||||||||||  ||||||||||||| |||||| |||||||| || |||||||||||||||    
T  6750939 tcatcaagcacaagaagtaccctattctgggcaagtctttgcttcaatatgtttttccctgattctatgtcacgtatcttgaattttgttgttttgtaaa 6750840  T
Q  101 catcacaaagtacctgttgctgcagtgaaactagattagtatgtgtctcccagaattcccgtacacccaaaaggaagctcattccctcaaatttgctccc 200  Q
    ||||||| ||||| |||||||| ||||||||| ||||||||||||||||||| ||||||| || | ||| |||||||||| |||||||||||||||||||    
T  6750839 catcacagagtacttgttgctgtagtgaaacttgattagtatgtgtctcccaaaattcccttatatccataaggaagctccttccctcaaatttgctccc 6750740  T
Q  201 aatttgattataaatggctttggcaatggttgttttacctgtaccccccattccccatat 260  Q
    ||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6750739 aatttcattgtaaatggctttggcaatggttgttttacccgtaccccccattccccatat 6750680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 6500223 - 6500482
Alignment:
Q  1 tcatcaagcacaaaaagcacccttttctgagcaagtctttgcttcaatataattttccctgattcgatgtcatgtatcttggatgttgttgttttgtaaa 100  Q
    ||||||||||||||||| ||| ||||||||| |||||||||| |||||||  ||||||||||||| |||||| |||||||| || |||||||||||||||    
T  6500223 tcatcaagcacaaaaagtacctttttctgagaaagtctttgcctcaatatgtttttccctgattctatgtcacgtatcttgaattttgttgttttgtaaa 6500322  T
Q  101 catcacaaagtacctgttgctgcagtgaaactagattagtatgtgtctcccagaattcccgtacacccaaaaggaagctcattccctcaaatttgctccc 200  Q
    |||||||||| |||| |||||| ||||||||| ||||||||| ||| ||||| || |||| || |  || |||||||||| | |||||||||| ||||||    
T  6500323 catcacaaagcaccttttgctgtagtgaaacttgattagtatctgtttcccaaaactcccttatattcagaaggaagctcctaccctcaaattcgctccc 6500422  T
Q  201 aatttgattataaatggctttggcaatggttgttttacctgtaccccccattccccatat 260  Q
    ||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||    
T  6500423 aatttgattataaatggctttggcaatggttgtcttgcccgtaccccccattccccatat 6500482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 6535527 - 6535786
Alignment:
Q  1 tcatcaagcacaaaaagcacccttttctgagcaagtctttgcttcaatataattttccctgattcgatgtcatgtatcttggatgttgttgttttgtaaa 100  Q
    |||||||| |||||||  ||||||||||| | ||||||||||||||||||| ||||||||||||| |||||| |||||||| |||  |||||||||||||    
T  6535527 tcatcaagtacaaaaaatacccttttctgggaaagtctttgcttcaatatatttttccctgattcaatgtcacgtatcttgaatgaagttgttttgtaaa 6535626  T
Q  101 catcacaaagtacctgttgctgcagtgaaactagattagtatgtgtctcccagaattcccgtacacccaaaaggaagctcattccctcaaatttgctccc 200  Q
    ||||||||||||| |||||||| ||||||||| ||||||||  ||||||||| ||||||| || |  || |||||||||| |||| ||||| ||||| ||    
T  6535627 catcacaaagtacttgttgctgtagtgaaacttgattagtacctgtctcccaaaattcccttatattcagaaggaagctctttccatcaaacttgctacc 6535726  T
Q  201 aatttgattataaatggctttggcaatggttgttttacctgtaccccccattccccatat 260  Q
    ||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  6535727 aatttcattataaatggctttggcaatggttgttttgcctataccccccattccccatat 6535786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 6672747 - 6672488
Alignment:
Q  1 tcatcaagcacaaaaagcacccttttctgagcaagtctttgcttcaatataattttccctgattcgatgtcatgtatcttggatgttgttgttttgtaaa 100  Q
    ||||||||||||| ||| ||| |  |||| |||||||||| ||||| |||| |||||| |||||| |||||| |||||||| |||| ||||||||||| |    
T  6672747 tcatcaagcacaagaagtaccttgctctgggcaagtctttccttcagtatatttttccttgattctatgtcacgtatcttgaatgtcgttgttttgtaga 6672648  T
Q  101 catcacaaagtacctgttgctgcagtgaaactagattagtatgtgtctcccagaattcccgtacacccaaaaggaagctcattccctcaaatttgctccc 200  Q
    |||||||||||||||||||||| || |||||||||||| ||  ||||||||| ||||||| || |  || |||||||||| |||||||||||||||||||    
T  6672647 catcacaaagtacctgttgctgtagagaaactagattaatacatgtctcccaaaattcccttataatcagaaggaagctccttccctcaaatttgctccc 6672548  T
Q  201 aatttgattataaatggctttggcaatggttgttttacctgtaccccccattccccatat 260  Q
    ||||||||| |||||||||||||||||| |||| || ||  |||||||||||||||||||    
T  6672547 aatttgattgtaaatggctttggcaatgtttgtcttgcccataccccccattccccatat 6672488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 6756557 - 6756298
Alignment:
Q  1 tcatcaagcacaaaaagcacccttttctgagcaagtctttgcttcaatataattttccctgattcgatgtcatgtatcttggatgttgttgttttgtaaa 100  Q
    ||||||||||| | ||| ||||| ||||| || |||||||||||||||||| ||||||||||||| |||||| |||||||| |||| ||||||| ||||     
T  6756557 tcatcaagcactagaagtaccctattctgggccagtctttgcttcaatatatttttccctgattctatgtcacgtatcttgaatgtcgttgtttcgtaag 6756458  T
Q  101 catcacaaagtacctgttgctgcagtgaaactagattagtatgtgtctcccagaattcccgtacacccaaaaggaagctcattccctcaaatttgctccc 200  Q
    |||| || ||||||||||| || ||||||||| ||||||||| ||||||||| || || | || |  || |||||||||| ||||||||||||| || ||    
T  6756457 catcgcagagtacctgttgttgtagtgaaacttgattagtatctgtctcccaaaactctcttatattcagaaggaagctccttccctcaaattttcttcc 6756358  T
Q  201 aatttgattataaatggctttggcaatggttgttttacctgtaccccccattccccatat 260  Q
    ||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  6756357 aatttcattataaatggctttggcaatggttgttttacccataccccccattccccatat 6756298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 6813866 - 6813607
Alignment:
Q  1 tcatcaagcacaaaaagcacccttttctgagcaagtctttgcttcaatataattttccctgattcgatgtcatgtatcttggatgttgttgttttgtaaa 100  Q
    ||||||||||||| ||| ||| | ||||| | |||||||| |||||||||| ||||||||||||||||||||||||||||| |||  ||||||||| |||    
T  6813866 tcatcaagcacaagaagtaccttcttctgggaaagtctttccttcaatatatttttccctgattcgatgtcatgtatcttgaatgccgttgttttgcaaa 6813767  T
Q  101 catcacaaagtacctgttgctgcagtgaaactagattagtatgtgtctcccagaattcccgtacacccaaaaggaagctcattccctcaaatttgctccc 200  Q
    ||||||||||||  |||||||| || |||||| ||||||||| ||||||||| | |||||  |    || ||| |||||| |||||||||||||||||||    
T  6813766 catcacaaagtatttgttgctgtagagaaacttgattagtatctgtctcccaaagttccctaatgttcagaagaaagctccttccctcaaatttgctccc 6813667  T
Q  201 aatttgattataaatggctttggcaatggttgttttacctgtaccccccattccccatat 260  Q
    ||||||||||||||| |||||||||| ||||||||||||  |||||||||||||||||||    
T  6813666 aatttgattataaattgctttggcaagggttgttttacccataccccccattccccatat 6813607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 33 - 257
Target Start/End: Complemental strand, 6725990 - 6725766
Alignment:
Q  33 aagtctttgcttcaatataattttccctgattcgatgtcatgtatcttggatgttgttgttttgtaaacatcacaaagtacctgttgctgcagtgaaact 132  Q
    |||||||| |||||||||| ||||||||||||| |||||| |||||||| |||||  |||||||||||||||||||||||||| |||||| || ||||||    
T  6725990 aagtctttccttcaatatatttttccctgattctatgtcacgtatcttgaatgttaatgttttgtaaacatcacaaagtaccttttgctgtagagaaact 6725891  T
Q  133 agattagtatgtgtctcccagaattcccgtacacccaaaaggaagctcattccctcaaatttgctcccaatttgattataaatggctttggcaatggttg 232  Q
    ||||| |||| ||||||||| |||||||  | |   | ||  |||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  6725890 agattggtatttgtctcccaaaattccctgatatttagaacaaagctccttccctcaaatttgctaccaatttgattataaatggctttggcaagggttg 6725791  T
Q  233 ttttacctgtaccccccattcccca 257  Q
    ||||||| ||||||||||| |||||    
T  6725790 ttttacccgtaccccccatacccca 6725766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 6649147 - 6648891
Alignment:
Q  1 tcatcaagcacaaaaagcacccttttctgagcaagtctttgcttcaatataattttccctgattcgatgtcatgtatcttggatgttgttgttttgtaaa 100  Q
    ||||||||||||| ||| ||||| ||||| | ||||||||  |||||| || ||||||||||||| |||||| |||||||| |||| || ||||||||||    
T  6649147 tcatcaagcacaataagtaccctattctgggaaagtctttctttcaatgtatttttccctgattctatgtcacgtatcttgaatgtcgtagttttgtaaa 6649048  T
Q  101 catcacaaagtacctgttgctgcagtgaaactagattagtatgtgtctcccagaattcccgtacacccaaaaggaagctcattccctcaaatttgctccc 200  Q
    |||||||||| |  ||||| || || |||||||||||| ||| ||||||||| ||||| | || |  || |||||||||| | |||||||||||| ||||    
T  6649047 catcacaaagaagttgttgttgtagagaaactagattaatatttgtctcccaaaattctcttatattcagaaggaagctcctcccctcaaatttgttccc 6648948  T
Q  201 aatttgattataaatggctttggcaatggttgttttacctgtaccccccattcccca 257  Q
    |||||||||||||||||||||||||||||| ||||| || || ||||||||||||||    
T  6648947 aatttgattataaatggctttggcaatggtagtttttccagttccccccattcccca 6648891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 6713903 - 6713647
Alignment:
Q  1 tcatcaagcacaaaaagcacccttttctgagcaagtctttgcttcaatataattttccctgattcgatgtcatgtatcttggatgttgttgttttgtaaa 100  Q
    ||||||||||||| ||| |||||||||||||||||||||| |||||||| | ||||||||||||| |||||| ||||||||  |  ||||||||||||||    
T  6713903 tcatcaagcacaagaagtacccttttctgagcaagtctttccttcaataaatttttccctgattcaatgtcaagtatcttgagttctgttgttttgtaaa 6713804  T
Q  101 catcacaaagtacctgttgctgcagtgaaactagattagtatgtgtctcccagaattcccgtacacccaaaaggaagctcattccctcaaatttgctccc 200  Q
    ||||||||||||  |||||||| || |||||| ||||||||| ||||||||| | |||||  |     | ||| |||||| |||||||||||||| | ||    
T  6713803 catcacaaagtatttgttgctgtagagaaacttgattagtatctgtctcccaaacttccctaatgtttagaagaaagctccttccctcaaatttgatacc 6713704  T
Q  201 aatttgattataaatggctttggcaatggttgttttacctgtaccccccattcccca 257  Q
    |||||||||||||||||||||||||| ||||||||| ||    ||||||||||||||    
T  6713703 aatttgattataaatggctttggcaagggttgttttgcccaagccccccattcccca 6713647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 6624304 - 6624563
Alignment:
Q  1 tcatcaagcacaaaaagcacccttttctgagcaagtctttgcttcaatataattttccctgattcgatgtcatgtatcttggatgttgttgttttgtaaa 100  Q
    ||||||||||||| ||| ||||| ||||| |||||||||| |||||||||| |||||||||||||||| ||  |||||||| |||  |||||||||||||    
T  6624304 tcatcaagcacaagaagtaccctattctgggcaagtctttccttcaatatatttttccctgattcgatatcgcgtatcttgaatgccgttgttttgtaaa 6624403  T
Q  101 catcacaaagtacctgttgctgcagtgaaactagattagtatgtgtctcccagaattcccgtacacccaaaaggaagctcattccctcaaatttgctccc 200  Q
    ||||||||||||  ||||| ||||| |||||  |||| | || |||||| || ||||| | || |  |||||| ||||||  ||| || ||||| |||||    
T  6624404 catcacaaagtatttgttgttgcagagaaacatgattggcatctgtctcgcaaaattctcttatattcaaaagaaagctccgtccatcgaattttctccc 6624503  T
Q  201 aatttgattataaatggctttggcaatggttgttttacctgtaccccccattccccatat 260  Q
    ||||||||||||||| |||||||||||||||||||||||   ||||||||||||||||||    
T  6624504 aatttgattataaatcgctttggcaatggttgttttacccacaccccccattccccatat 6624563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 6794536 - 6794277
Alignment:
Q  1 tcatcaagcacaaaaagcacccttttctgagcaagtctttgcttcaatataattttccctgattcgatgtcatgtatcttggatgttgttgttttgtaaa 100  Q
    ||||||||||||| ||| | ||||||||| |||||||||| |||||||||| ||||||||||||| || ||| |||| ||| ||||   || ||||||||    
T  6794536 tcatcaagcacaagaagtatccttttctgggcaagtctttccttcaatatatttttccctgattctatatcacgtattttgaatgtcagtgctttgtaaa 6794437  T
Q  101 catcacaaagtacctgttgctgcagtgaaactagattagtatgtgtctcccagaattcccgtacacccaaaaggaagctcattccctcaaatttgctccc 200  Q
    |||||  ||||| ||||||||| || |||||| ||||||||| ||| ||||| | |||||  |    ||||||||||||| |||||||||||||||||||    
T  6794436 catcatgaagtatctgttgctgtagagaaacttgattagtatctgtgtcccaaacttccctaatgttcaaaaggaagctccttccctcaaatttgctccc 6794337  T
Q  201 aatttgattataaatggctttggcaatggttgttttacctgtaccccccattccccatat 260  Q
    ||||||||||| ||||||||| |||| ||||||||| ||  |||||||||||||||||||    
T  6794336 aatttgattatgaatggctttagcaagggttgtttttcccataccccccattccccatat 6794277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 6547778 - 6548013
Alignment:
Q  1 tcatcaagcacaaaaagcacccttttctgagcaagtctttgcttcaatataattttccctgattcgatgtcatgtatcttggatgttgttgttttgtaaa 100  Q
    ||||||||||| |||||||| || || |  |  ||||||| ||| ||| || ||||||||||||| |||||| |||||||| |||  |||||||||||||    
T  6547778 tcatcaagcactaaaagcactctattatcggagagtctttcctttaatgtatttttccctgattcaatgtcacgtatcttgaatgaagttgttttgtaaa 6547877  T
Q  101 catcacaaagtacctgttgctgcagtgaaactagattagtatgtgtctcccagaattcccgtacacccaaaaggaagctcattccctcaaatttgctccc 200  Q
    ||||||||||||| |||||||| ||||||||| ||||||||  ||||||||| ||||||| || |  || |||||||||| |||| ||||| ||||| ||    
T  6547878 catcacaaagtacttgttgctgtagtgaaacttgattagtacctgtctcccaaaattcccttatattcagaaggaagctctttccgtcaaacttgctacc 6547977  T
Q  201 aatttgattataaatggctttggcaatggttgtttt 236  Q
    ||||| ||||||||||| |||||| |||||||||||    
T  6547978 aatttcattataaatggatttggctatggttgtttt 6548013  T

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Target: chr4; HSP #14
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 6589912 - 6590171
Alignment:
Q  1 tcatcaagcacaaaaagcacccttttctgagcaagtctttgcttcaatataattttccctgattcgatgtcatgtatcttggatgttgttgttttgtaaa 100  Q
    ||||||| ||||| ||| ||||| ||||| | |||| ||| |||||| ||| |||| |||||||| |  ||| |||||||| ||||   |||||||||||    
T  6589912 tcatcaaacacaagaagaaccctattctgggaaagtttttccttcaacatatttttgcctgattctagatcacgtatcttgaatgtcaatgttttgtaaa 6590011  T
Q  101 catcacaaagtacctgttgctgcagtgaaactagattagtatgtgtctcccagaattcccgtacacccaaaaggaagctcattccctcaaatttgctccc 200  Q
    |||||  ||||| || |||||| || |||||| ||||||||| ||||||||| || || | || |  || ||| |||||| |||||||||||||||||||    
T  6590012 catcatcaagtatcttttgctgtagagaaacttgattagtatctgtctcccataactctcttatattcagaagaaagctccttccctcaaatttgctccc 6590111  T
Q  201 aatttgattataaatggctttggcaatggttgttttacctgtaccccccattccccatat 260  Q
    ||||||||||||||| |||||||||| ||||||||| ||  |||||||||||||||||||    
T  6590112 aatttgattataaattgctttggcaagggttgttttccccataccccccattccccatat 6590171  T

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Target: chr4; HSP #15
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 26 - 226
Target Start/End: Complemental strand, 8412930 - 8412730
Alignment:
Q  26 tctgagcaagtctttgcttcaatataattttccctgattcgatgtcatgtatcttggatgttgttgttttgtaaacatcacaaagtacctgttgctgcag 125  Q
    |||| |||||||||| ||||| |||| ||||||||||| | ||||||||||||||| ||||   ||||||||||| ||||||||||||| ||||||| ||    
T  8412930 tctgggcaagtctttccttcagtatacttttccctgatactatgtcatgtatcttgtatgtcaatgttttgtaaaaatcacaaagtaccagttgctgtag 8412831  T
Q  126 tgaaactagattagtatgtgtctcccagaattcccgtacacccaaaaggaagctcattccctcaaatttgctcccaatttgattataaatggctttggca 225  Q
     |||||||||||||||| | ||||||| ||||||| || |   | || ||||| | ||||||||||||| || |||||||||||||||||||||||||||    
T  8412830 agaaactagattagtatttttctcccaaaattcccttatatttagaacgaagcactttccctcaaattttctaccaatttgattataaatggctttggca 8412731  T
Q  226 a 226  Q
    |    
T  8412730 a 8412730  T

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Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 6550700 - 6550740
Alignment:
Q  199 ccaatttgattataaatggctttggcaatggttgttttacc 239  Q
    |||||||||| ||||||||||| ||||||||||||||||||    
T  6550700 ccaatttgatgataaatggcttgggcaatggttgttttacc 6550740  T

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Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 6792180 - 6792140
Alignment:
Q  199 ccaatttgattataaatggctttggcaatggttgttttacc 239  Q
    |||||||||| ||||||||||||||||||||||| ||||||    
T  6792180 ccaatttgatcataaatggctttggcaatggttgatttacc 6792140  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 6503827 - 6503867
Alignment:
Q  199 ccaatttgattataaatggctttggcaatggttgttttacc 239  Q
    ||||| |||||||||||||||| ||||||||||| ||||||    
T  6503827 ccaatctgattataaatggcttcggcaatggttgatttacc 6503867  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 6646859 - 6646819
Alignment:
Q  199 ccaatttgattataaatggctttggcaatggttgttttacc 239  Q
    ||||| |||||||||||||||| ||||||||||| ||||||    
T  6646859 ccaatctgattataaatggcttcggcaatggttgatttacc 6646819  T

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Target: scaffold0373 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 11767 - 12027
Alignment:
Q  1 tcatcaagcacaaaaagcacccttttctgagcaagtctttgcttcaatataattttccctgattcgatgtcatgtatcttggatgttgttgttttgtaaa 100  Q
    ||||||||||||| ||| | ||||||||| |||||||||| |||||||||| ||||||||||||| || ||| |||| ||| ||||   || ||||||||    
T  11767 tcatcaagcacaagaagtatccttttctgggcaagtctttccttcaatatatttttccctgattctatatcacgtattttgaatgtcagtgctttgtaaa 11866  T
Q  101 catcacaaagtacctgttgctgcagtgaaactagattagtatgtgtctcccagaa-ttcccgtacacccaaaaggaagctcattccctcaaatttgctcc 199  Q
    |||||  ||||| ||||||||| |   ||||| ||||||||| ||| ||||  || |||||  |    ||||||||||||| ||||||||||||||||||    
T  11867 catcatgaagtatctgttgctgtacacaaacttgattagtatctgtgtccccaaacttccctaatgttcaaaaggaagctccttccctcaaatttgctcc 11966  T
Q  200 caatttgattataaatggctttggcaatggttgttttacctgtaccccccattccccatat 260  Q
    |||||||||||| ||||||||| |||| ||||||||| ||  |||||||||||||||||||    
T  11967 caatttgattatgaatggctttagcaagggttgtttttcccataccccccattccccatat 12027  T

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Target: scaffold0729 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0729
Description:

Target: scaffold0729; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 6449 - 6489
Alignment:
Q  199 ccaatttgattataaatggctttggcaatggttgttttacc 239  Q
    |||||||||| ||||||||||||||||||||||| ||||||    
T  6449 ccaatttgatcataaatggctttggcaatggttgatttacc 6489  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 257
Target Start/End: Original strand, 32412947 - 32413002
Alignment:
Q  202 atttgattataaatggctttggcaatggttgttttacctgtaccccccattcccca 257  Q
    ||||||||||| |||||||| ||  |||||||||||||||  ||||||||||||||    
T  32412947 atttgattatagatggcttttgctgtggttgttttacctgatccccccattcccca 32413002  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 236
Target Start/End: Original strand, 5692169 - 5692234
Alignment:
Q  171 aaggaagctcattccctcaaatttgctcccaatttgattataaatggctttggcaatggttgtttt 236  Q
    |||||||||| |||| ||||| ||||  ||||||| ||| ||||||||||| |||||||| |||||    
T  5692169 aaggaagctccttccttcaaaattgcggccaattttattgtaaatggcttttgcaatggtggtttt 5692234  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 5104958 - 5104998
Alignment:
Q  199 ccaatttgattataaatggctttggcaatggttgttttacc 239  Q
    ||||||| ||| ||||| |||||||||||||||||||||||    
T  5104958 ccaattttattgtaaatagctttggcaatggttgttttacc 5104998  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 5133991 - 5134031
Alignment:
Q  199 ccaatttgattataaatggctttggcaatggttgttttacc 239  Q
    ||||||| ||| ||||||||||| |||||||||||||||||    
T  5133991 ccaattttattgtaaatggctttcgcaatggttgttttacc 5134031  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 5368376 - 5368336
Alignment:
Q  199 ccaatttgattataaatggctttggcaatggttgttttacc 239  Q
    ||||||| ||| ||||| |||||||||||||||||||||||    
T  5368376 ccaattttattgtaaatagctttggcaatggttgttttacc 5368336  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 5423669 - 5423629
Alignment:
Q  199 ccaatttgattataaatggctttggcaatggttgttttacc 239  Q
    ||||||| ||| ||||| |||||||||||||||||||||||    
T  5423669 ccaattttattgtaaatagctttggcaatggttgttttacc 5423629  T

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