View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4542_low_1 (Length: 905)

Name: NF4542_low_1
Description: NF4542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4542_low_1
NF4542_low_1
[»] chr4 (93 HSPs)
chr4 (206-886)||(48902734-48903416)
chr4 (16-207)||(48903454-48903645)
chr4 (426-691)||(48852663-48852925)
chr4 (721-830)||(37827108-37827217)
chr4 (425-509)||(49044011-49044095)
chr4 (238-358)||(7790386-7790509)
chr4 (426-503)||(48705205-48705282)
chr4 (721-852)||(48870372-48870503)
chr4 (721-852)||(48886058-48886189)
chr4 (721-852)||(45366326-45366463)
chr4 (254-358)||(7237391-7237498)
chr4 (239-306)||(49038511-49038578)
chr4 (254-358)||(7771701-7771808)
chr4 (246-306)||(45371714-45371774)
chr4 (258-306)||(48147365-48147413)
chr4 (258-306)||(48864396-48864444)
chr4 (721-825)||(48875703-48875807)
chr4 (257-358)||(7773476-7773580)
chr4 (254-363)||(48156077-48156189)
chr4 (258-308)||(48861647-48861697)
chr4 (715-769)||(49044304-49044358)
chr4 (427-505)||(49048399-49048477)
chr4 (541-611)||(49048507-49048577)
chr4 (653-774)||(48705405-48705526)
chr4 (254-306)||(7813838-7813890)
chr4 (721-825)||(7877583-7877687)
chr4 (542-690)||(7877727-7877874)
chr4 (254-306)||(7878744-7878796)
chr4 (254-306)||(7908663-7908715)
chr4 (542-610)||(45372004-45372072)
chr4 (722-842)||(45372184-45372304)
chr4 (246-306)||(45384532-45384592)
chr4 (426-510)||(48735225-48735309)
chr4 (258-306)||(49043820-49043868)
chr4 (261-367)||(45365875-45365984)
chr4 (426-509)||(48147536-48147619)
chr4 (427-502)||(48870713-48870788)
chr4 (427-502)||(48886399-48886474)
chr4 (459-510)||(48898885-48898936)
chr4 (39-198)||(49040549-49040708)
chr4 (648-776)||(7237764-7237889)
chr4 (722-768)||(48891326-48891372)
chr4 (426-499)||(7773651-7773724)
chr4 (648-875)||(7789899-7790123)
chr4 (258-367)||(50669382-50669491)
chr4 (258-306)||(7766003-7766051)
chr4 (262-306)||(7786825-7786869)
chr4 (254-306)||(7800998-7801050)
chr4 (426-498)||(45371891-45371963)
chr4 (258-306)||(48853042-48853090)
chr4 (429-493)||(48876026-48876090)
chr4 (458-502)||(50250626-50250670)
chr4 (254-306)||(50666676-50666728)
chr4 (42-113)||(48871156-48871227)
chr4 (42-113)||(48876460-48876531)
chr4 (42-113)||(48886842-48886913)
chr4 (541-608)||(49044121-49044188)
chr4 (254-304)||(7823332-7823382)
chr4 (723-769)||(48852576-48852622)
chr4 (248-306)||(49048197-49048255)
chr4 (154-207)||(7766180-7766233)
chr4 (648-875)||(7771214-7771438)
chr4 (426-499)||(7771563-7771636)
chr4 (154-207)||(7787002-7787055)
chr4 (426-499)||(7790248-7790321)
chr4 (258-358)||(37826642-37826745)
chr4 (426-499)||(45366043-45366116)
chr4 (722-771)||(48898630-48898679)
chr4 (719-772)||(49048696-49048749)
chr4 (724-825)||(50250907-50251008)
chr4 (562-691)||(50669052-50669181)
chr4 (171-207)||(7878885-7878921)
chr4 (41-137)||(48155816-48155912)
chr4 (722-774)||(48170695-48170747)
chr4 (721-776)||(7773940-7773995)
chr4 (542-597)||(7908410-7908465)
chr4 (560-611)||(48705330-48705381)
chr4 (254-293)||(48735059-48735098)
chr4 (261-367)||(48870857-48870966)
chr4 (261-367)||(48876161-48876270)
chr4 (261-367)||(48886543-48886652)
chr4 (542-597)||(48891503-48891558)
chr4 (258-305)||(50672860-50672907)
chr4 (561-611)||(7771457-7771507)
chr4 (561-611)||(7790142-7790192)
chr4 (569-611)||(45366186-45366228)
chr4 (174-207)||(7771897-7771930)
chr4 (174-207)||(7790582-7790615)
chr4 (426-499)||(7908499-7908572)
chr4 (257-306)||(47208238-47208287)
chr4 (642-691)||(48735417-48735466)
chr4 (642-691)||(50250816-50250865)
chr4 (457-502)||(50669244-50669289)
[»] chr5 (8 HSPs)
chr5 (271-833)||(178892-179454)
chr5 (238-510)||(9119914-9120192)
chr5 (258-306)||(42561985-42562033)
chr5 (722-842)||(42562446-42562566)
chr5 (653-768)||(29696126-29696241)
chr5 (48-202)||(9120270-9120424)
chr5 (425-506)||(29696391-29696472)
chr5 (261-306)||(29688490-29688535)
[»] chr3 (9 HSPs)
chr3 (263-873)||(47451557-47452173)
chr3 (254-503)||(11015139-11015385)
chr3 (258-509)||(11005580-11005828)
chr3 (729-873)||(11015641-11015785)
chr3 (258-306)||(11024155-11024203)
chr3 (644-691)||(11005990-11006037)
chr3 (644-691)||(11024565-11024612)
chr3 (644-691)||(11015553-11015600)
chr3 (76-201)||(47451328-47451453)
[»] chr7 (4 HSPs)
chr7 (721-828)||(48883652-48883759)
chr7 (258-312)||(48884179-48884233)
chr7 (426-500)||(48883993-48884068)
chr7 (546-612)||(48883880-48883946)
[»] chr6 (6 HSPs)
chr6 (258-509)||(21015982-21016230)
chr6 (722-776)||(21015712-21015766)
chr6 (536-609)||(21979561-21979634)
chr6 (543-611)||(21015886-21015954)
chr6 (559-610)||(14197610-14197661)
chr6 (274-303)||(21979296-21979325)
[»] chr8 (12 HSPs)
chr8 (44-200)||(4030184-4030340)
chr8 (427-509)||(4031727-4031809)
chr8 (258-306)||(4031578-4031626)
chr8 (459-502)||(15349039-15349082)
chr8 (648-825)||(15348719-15348896)
chr8 (271-358)||(4962184-4962274)
chr8 (275-307)||(15349243-15349275)
chr8 (721-775)||(12200211-12200265)
chr8 (721-775)||(12444639-12444693)
chr8 (42-131)||(4961915-4962004)
chr8 (472-501)||(12195484-12195513)
chr8 (472-501)||(12439912-12439941)
[»] chr2 (2 HSPs)
chr2 (42-200)||(29350931-29351089)
chr2 (559-600)||(21426488-21426529)
[»] chr1 (7 HSPs)
chr1 (254-362)||(24310521-24310629)
chr1 (254-301)||(24367531-24367578)
chr1 (39-112)||(24341008-24341081)
chr1 (39-112)||(24353373-24353446)
chr1 (425-501)||(24310370-24310446)
chr1 (254-306)||(24416139-24416191)
chr1 (638-695)||(24352766-24352823)
[»] scaffold1051 (1 HSPs)
scaffold1051 (560-601)||(1991-2032)


Alignment Details
Target: chr4 (Bit Score: 563; Significance: 0; HSPs: 93)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 206 - 886
Target Start/End: Complemental strand, 48903416 - 48902734
Alignment:
Q  206 acatattgggtgaaagtacttggtggaaatgccaatagacagaacacaagttttagtccaagacaaatgcactttgtattctttcatcacccatatttca 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48903416 acatattgggtgaaagtacttggtggaaatgccaatagacagaacacaaattttagtccaagacaaatgcactttgtattctttcatcacccatatttca 48903317  T
Q  306 aatttattatcgtaatccaaagcccataggctaagaaattctccaaatacccataaatcacactttgtagattcatagtccacatcaagtgggagaggaa 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48903316 aatttattatcgtaatccaaagcccataggctaagaaattctccaaatacccataaatcacactttgtagattcatagtccacatcaagtgggagaggaa 48903217  T
Q  406 tctcaaaaaggtattttttaattaaatcaaaggcaacaataacattctttcttaaatcatgatgaaaagccaaccaatgaatagccccattaaagagcga 505  Q
    |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  48903216 tctcaaaaaggtcttttttcattaaatcaaaggcaacaataacattctttcttaaatcatgatgaaaagccaactaatgaatagccccattaaagagcga 48903117  T
Q  506 ccctgnnnnnnn--ggggtcaccgtacaagacattcgtataagggaagtgagttccctcaatttgtttccatgtattatctctcaatgagaaaatctcta 603  Q
    || ||         ||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  48903116 ccttgttttttttgggggtcaccgtacgagacattcgtataagggaagtgagttccctccatctgtttccatgtattatctctcaatgagaaaatctcta 48903017  T
Q  604 aatgtgatataacaccaactaagtttggataatgtgaaattgataccatcaagtaatcatctcttgagtggtcatacccaaaaccataaaaataatttac 703  Q
    |||| ||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48903016 aatgagatataataccaactaagttcgcataatgtgaaattgataccatcaagtaatcatctcttgagtggtcatacccaaaaccataaaaataatttac 48902917  T
Q  704 gaatgaattgaaaccataaggagacaaaggtatttgtttgtgaaatccagtggaaggattccataggtagatggtgaaagaacagtgcaaaagtacaaac 803  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  48902916 gaatgaattgcaaccataaggagacaaaggtattcgtttgtgaaatccagtggaaggattccataaatagatggtgaaagaacagtgcaaaagtacaaac 48902817  T
Q  804 cctcttcacgaacctataatttgaagatcaaaataagatccaggaagcataaatttaaggttctgtgaagcataagcatgacc 886  Q
    ||||| || |||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  48902816 cctctgcatgaacctataatttttagatcaaaataagatccacgaagcataaatttaaggttctgtgaagcataagcacgacc 48902734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 16 - 207
Target Start/End: Complemental strand, 48903645 - 48903454
Alignment:
Q  16 tcatcatacttcaccattcaagtactacctcattcttcttatttgtgccatcttcctaaacttgcttaatgtcaccagggagtgaaagtagagactctac 115  Q
    |||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  48903645 tcatcaaacttcaccattcaagtactacctcattcttcttatttatgccatcttcttaaacttgcttaatgtcaccagggagtgaaaatagagactctac 48903546  T
Q  116 atacaaggccacttgggatccatgtagatccttacagcaggagtgatactctaggaactgtcctttgtcattatacttcaccaatctagtac 207  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48903545 atacaaggccacttgggatccatgtagatccttaccgtaggagtgatactctaggaactgtcctttgtcattatacttcaccaatctagtac 48903454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 426 - 691
Target Start/End: Complemental strand, 48852925 - 48852663
Alignment:
Q  426 attaaatcaaaggcaacaataacattctttctt---aaatcatgatgaaaagccaaccaatgaatagccccattaaagagcgaccctgnnnnnnnggggt 522  Q
    |||||||||||||| ||||||||||| ||  ||   ||||||||| ||||||||||||||||||||||||||||||| |||||||||        ||| |    
T  48852925 attaaatcaaaggccacaataacattattcattggtaaatcatgacgaaaagccaaccaatgaatagccccattaaaaagcgaccct---actctgggat 48852829  T
Q  523 caccgtacaagacattcgtataagggaagtgagttccctcaatttgtttccatgtattatctctcaatgagaaaatctctaaatgtgatataacaccaac 622  Q
    || || |   | ||||| | |||||||||||||| |||||||||| |||||||| |||| ||||||||||||||| |||||||||||||  ||||  | |    
T  48852828 catcgga---ggcattcatgtaagggaagtgagtaccctcaatttctttccatgcattagctctcaatgagaaaaactctaaatgtgatgaaacattagc 48852732  T
Q  623 taagtttggataatgtgaaattgataccatcaagtaatcatctcttgagtggtcatacccaaaaccata 691  Q
    |||| ||| || ||  || ||| | || | ||||||||||||  ||||  |||||||||||||||||||    
T  48852731 taaggttgtatcataggacattaaaactaccaagtaatcatcggttgacgggtcatacccaaaaccata 48852663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 721 - 830
Target Start/End: Original strand, 37827108 - 37827217
Alignment:
Q  721 aaggagacaaaggtatttgtttgtgaaatccagtggaaggattccataggtagatggtgaaagaacagtgcaaaagtacaaaccctcttcacgaacctat 820  Q
    |||||||||| |||||||||||||||||||||||||| |||||||||| ||||||| | ||||||| |||||||| |||||||||||| |  |||||| |    
T  37827108 aaggagacaagggtatttgtttgtgaaatccagtggatggattccatatgtagatgtttaaagaacggtgcaaaaatacaaaccctctacctgaaccttt 37827207  T
Q  821 aatttgaaga 830  Q
    ||||||||||    
T  37827208 aatttgaaga 37827217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 425 - 509
Target Start/End: Original strand, 49044011 - 49044095
Alignment:
Q  425 aattaaatcaaaggcaacaataacattctttcttaaatcatgatgaaaagccaaccaatgaatagccccattaaagagcgaccct 509  Q
    |||||||||||||||||||||||||||| ||  ||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  49044011 aattaaatcaaaggcaacaataacattcattgataaatcaagatgaaaagccaaccagtgaatagccccattaaagagcgaccct 49044095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 238 - 358
Target Start/End: Complemental strand, 7790509 - 7790386
Alignment:
Q  238 caatagacagaacacaagttttagtccaagacaaatgcactttgtattctttcatcacccatatttcaaat---ttattatcgtaatccaaagcccatag 334  Q
    ||||||| ||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||||| |   | |||||| ||||||  ||| ||||     
T  7790509 caatagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaattgtatcattatcataatccttagcgcataa 7790410  T
Q  335 gctaagaaattctccaaataccca 358  Q
     || ||||||||||||||||||||    
T  7790409 actgagaaattctccaaataccca 7790386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 426 - 503
Target Start/End: Original strand, 48705205 - 48705282
Alignment:
Q  426 attaaatcaaaggcaacaataacattctttcttaaatcatgatgaaaagccaaccaatgaatagccccattaaagagc 503  Q
    ||||||||||||||||||||||||| ||||| |||||||||| || |||||||||||||||||||||||||| |||||    
T  48705205 attaaatcaaaggcaacaataacatcctttcgtaaatcatgacgataagccaaccaatgaatagccccattatagagc 48705282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 721 - 852
Target Start/End: Complemental strand, 48870503 - 48870372
Alignment:
Q  721 aaggagacaaaggtatttgtttgtgaaatccagtggaaggattccataggtagatggtgaaagaacagtgcaaaagtacaaaccctcttcacgaacctat 820  Q
    ||||| ||||||||||||||||||||||||| ||||| |||||||||||||||| |||   || ||| ||||| | || ||| ||||| || |||||| |    
T  48870503 aaggacacaaaggtatttgtttgtgaaatccggtggatggattccataggtagagggttggagcacaatgcaataatataaagcctctacatgaaccttt 48870404  T
Q  821 aatttgaagatcaaaataagatccaggaagca 852  Q
    ||||| || |||| |||||||| |||||||||    
T  48870403 aatttcaaaatcataataagattcaggaagca 48870372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 721 - 852
Target Start/End: Complemental strand, 48886189 - 48886058
Alignment:
Q  721 aaggagacaaaggtatttgtttgtgaaatccagtggaaggattccataggtagatggtgaaagaacagtgcaaaagtacaaaccctcttcacgaacctat 820  Q
    ||||| ||||||||||||||||||||||||| ||||| |||||||||||||||| |||   || ||| ||||| | || ||| ||||| || |||||| |    
T  48886189 aaggacacaaaggtatttgtttgtgaaatccggtggatggattccataggtagagggttggagcacaatgcaataatataaagcctctacatgaaccttt 48886090  T
Q  821 aatttgaagatcaaaataagatccaggaagca 852  Q
    ||||| || |||| |||||||| |||||||||    
T  48886089 aatttcaaaatcataataagattcaggaagca 48886058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 721 - 852
Target Start/End: Original strand, 45366326 - 45366463
Alignment:
Q  721 aaggagacaaaggtatttgtttgtgaaatccagtggaaggattccataggtagatg------gtgaaagaacagtgcaaaagtacaaaccctcttcacga 814  Q
    |||||| ||||||||||| ||| |||||||||||||| |||||||| ||||| | |      || ||||||||||||||||||| ||| ||||| || ||    
T  45366326 aaggaggcaaaggtatttttttatgaaatccagtggatggattccaaaggtaaaggcttaaagttaaagaacagtgcaaaagtataaagcctctacatga 45366425  T
Q  815 acctataatttgaagatcaaaataagatccaggaagca 852  Q
    |||| |||||||||||||| |||||||| | |||||||    
T  45366426 acctttaatttgaagatcagaataagattcgggaagca 45366463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 254 - 358
Target Start/End: Original strand, 7237391 - 7237498
Alignment:
Q  254 agttttagtccaagacaaatgcactttgtattctttcatcacccatatttcaaat---ttattatcgtaatccaaagcccataggctaagaaattctcca 350  Q
    ||||||||||||| || |||||| ||||||||||||||||||||||||| ||| |   | |||||| ||||||  ||||||||| || ||||||||||||    
T  7237391 agttttagtccaaaacgaatgcattttgtattctttcatcacccatattacaattgtatcattatcataatcctgagcccatagactgagaaattctcca 7237490  T
Q  351 aataccca 358  Q
    ||||||||    
T  7237491 aataccca 7237498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 239 - 306
Target Start/End: Original strand, 49038511 - 49038578
Alignment:
Q  239 aatagacagaacacaagttttagtccaagacaaatgcactttgtattctttcatcacccatatttcaa 306  Q
    |||||||||||||  ||| |||||||||||| |||| |||||||||||||||||||||||||||||||    
T  49038511 aatagacagaacaagagtcttagtccaagacgaatgaactttgtattctttcatcacccatatttcaa 49038578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 254 - 358
Target Start/End: Complemental strand, 7771808 - 7771701
Alignment:
Q  254 agttttagtccaagacaaatgcactttgtattctttcatcacccatatttcaaat---ttattatcgtaatccaaagcccataggctaagaaattctcca 350  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||| ||| |   | |||||| ||||||  ||| ||||  || ||||||||||||    
T  7771808 agttttagtccatgacgaatgcactttgtattctttcatcacccatattacaattgtatcattatcataatccttagcgcataaactgagaaattctcca 7771709  T
Q  351 aataccca 358  Q
    ||||||||    
T  7771708 aataccca 7771701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 246 - 306
Target Start/End: Original strand, 45371714 - 45371774
Alignment:
Q  246 agaacacaagttttagtccaagacaaatgcactttgtattctttcatcacccatatttcaa 306  Q
    |||||| |||| |||||||||||| |||||||||||||||||||||| |||||||||||||    
T  45371714 agaacaaaagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 45371774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 258 - 306
Target Start/End: Original strand, 48147365 - 48147413
Alignment:
Q  258 ttagtccaagacaaatgcactttgtattctttcatcacccatatttcaa 306  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  48147365 ttagtccaagacgaatgcactttgtattctttcatcacccatatttcaa 48147413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 258 - 306
Target Start/End: Complemental strand, 48864444 - 48864396
Alignment:
Q  258 ttagtccaagacaaatgcactttgtattctttcatcacccatatttcaa 306  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  48864444 ttagtccaagacgaatgcactttgtattctttcatcacccatatttcaa 48864396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 721 - 825
Target Start/End: Complemental strand, 48875807 - 48875703
Alignment:
Q  721 aaggagacaaaggtatttgtttgtgaaatccagtggaaggattccataggtagatggtgaaagaacagtgcaaaagtacaaaccctcttcacgaacctat 820  Q
    ||||||||| ||||||||||||||||||||| ||||| |||||||||||||||| | |  || |||| ||||| |||| ||| ||||| || |||||| |    
T  48875807 aaggagacataggtatttgtttgtgaaatccggtggatggattccataggtagaggcttgaaaaacaatgcaacagtataaagcctctgcaagaaccttt 48875708  T
Q  821 aattt 825  Q
    |||||    
T  48875707 aattt 48875703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 257 - 358
Target Start/End: Original strand, 7773476 - 7773580
Alignment:
Q  257 tttagtccaagacaaatgcactttgtattctttcatcacccatatttcaaat---ttattatcgtaatccaaagcccataggctaagaaattctccaaat 353  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||| |   | |||| | | ||||  ||||||||  |||||| |||||||||||    
T  7773476 tttaatccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcattagcattatccttagcccatacactaagatattctccaaat 7773575  T
Q  354 accca 358  Q
    |||||    
T  7773576 accca 7773580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 254 - 363
Target Start/End: Original strand, 48156077 - 48156189
Alignment:
Q  254 agttttagtccaagacaaatgcactttgtattctttcatcacccatatttcaa---atttattatcgtaatccaaagcccataggctaagaaattctcca 350  Q
    |||||||||||||||  |||||||||||||||| |||||||||||||||||||    || |||| |  |||| | ||||||||  || ||||||||||||    
T  48156077 agttttagtccaagaagaatgcactttgtattcgttcatcacccatatttcaactctttcattagcccaatcaacagcccataaactgagaaattctcca 48156176  T
Q  351 aatacccataaat 363  Q
    |||||||| ||||    
T  48156177 aatacccacaaat 48156189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 258 - 308
Target Start/End: Complemental strand, 48861697 - 48861647
Alignment:
Q  258 ttagtccaagacaaatgcactttgtattctttcatcacccatatttcaaat 308  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||||    
T  48861697 ttagtccaagacaaatgcactttgtattcttttattacccatatttcaaat 48861647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 715 - 769
Target Start/End: Original strand, 49044304 - 49044358
Alignment:
Q  715 aaccataaggagacaaaggtatttgtttgtgaaatccagtggaaggattccatag 769  Q
    ||||||||||||||||||||||||||||||||| || |||||| |||||||||||    
T  49044304 aaccataaggagacaaaggtatttgtttgtgaactctagtggatggattccatag 49044358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 427 - 505
Target Start/End: Original strand, 49048399 - 49048477
Alignment:
Q  427 ttaaatcaaaggcaacaataacattctttcttaaatcatgatgaaaagccaaccaatgaatagccccattaaagagcga 505  Q
    |||||||||||||||||||||||||| |   ||||||| |||||||||||||||| ||||||||||  |||| ||||||    
T  49048399 ttaaatcaaaggcaacaataacattcatcgataaatcaagatgaaaagccaaccagtgaatagccctgttaaggagcga 49048477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 541 - 611
Target Start/End: Original strand, 49048507 - 49048577
Alignment:
Q  541 tataagggaagtgagttccctcaatttgtttccatgtattatctctcaatgagaaaatctctaaatgtgat 611  Q
    ||||||||| |||||| |||||||||| ||||||| ||||||||||||| ||||||| ||| |||||||||    
T  49048507 tataagggatgtgagtaccctcaatttctttccatatattatctctcaacgagaaaaactccaaatgtgat 49048577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 653 - 774
Target Start/End: Original strand, 48705405 - 48705526
Alignment:
Q  653 caagtaatcatctcttgagtggtcatacccaaaaccataaaaataatttacgaatgaattgaaaccataaggagacaaaggtatttgtttgtgaaatcca 752  Q
    ||||||||||||| |||| || ||||| ||||||||||  ||||| | | |   | ||| | ||||| |||| |||||||||||||||||||||||||||    
T  48705405 caagtaatcatctgttgactgatcatatccaaaaccatggaaatattctgcatctaaatcggaaccaaaaggtgacaaaggtatttgtttgtgaaatcca 48705504  T
Q  753 gtggaaggattccataggtaga 774  Q
    || || |||||||| |||||||    
T  48705505 gtagatggattccacaggtaga 48705526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 7813890 - 7813838
Alignment:
Q  254 agttttagtccaagacaaatgcactttgtattctttcatcacccatatttcaa 306  Q
    ||||||| |||||||| ||||||||||||||||||||| ||||||||||||||    
T  7813890 agttttattccaagacgaatgcactttgtattctttcaacacccatatttcaa 7813838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 721 - 825
Target Start/End: Complemental strand, 7877687 - 7877583
Alignment:
Q  721 aaggagacaaaggtatttgtttgtgaaatccagtggaaggattccataggtagatggtgaaagaacagtgcaaaagtacaaaccctcttcacgaacctat 820  Q
    ||||||||| |||||||||||| | |||||||||||| |||||||||| ||||||| |   |  ||||| |||||||| ||||||||| || |||||| |    
T  7877687 aaggagacacaggtatttgttttttaaatccagtggatggattccatatgtagatgattggatgacagtacaaaagtataaaccctctgcatgaacctct 7877588  T
Q  821 aattt 825  Q
    |||||    
T  7877587 aattt 7877583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 542 - 690
Target Start/End: Complemental strand, 7877874 - 7877727
Alignment:
Q  542 ataagggaagtgagttccctcaatttgtttccatgtattatctctcaatgagaaaatctctaaatgtgatataacaccaactaagtttggataatgtgaa 641  Q
    |||||||||| |||| | |||| ||| |||||||||||||||||| |||||||||| ||  ||||||| |  || |  ||||| | |||||| ||  ||     
T  7877874 ataagggaagggagtactctcagtttctttccatgtattatctctaaatgagaaaaacttcaaatgtg-ttgaaaattaactatggttggattataggac 7877776  T
Q  642 attgataccatcaagtaatcatctcttgagtggtcatacccaaaaccat 690  Q
    | ||| |||| |||||||||||||||||| |||||||| ||||||||||    
T  7877775 aatgaaaccaccaagtaatcatctcttgattggtcataaccaaaaccat 7877727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 7878796 - 7878744
Alignment:
Q  254 agttttagtccaagacaaatgcactttgtattctttcatcacccatatttcaa 306  Q
    ||||||| |||||||  ||||||||||||||||||||||||||||||||||||    
T  7878796 agttttaatccaagatgaatgcactttgtattctttcatcacccatatttcaa 7878744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 7908715 - 7908663
Alignment:
Q  254 agttttagtccaagacaaatgcactttgtattctttcatcacccatatttcaa 306  Q
    ||||||| |||||||  ||||||||||||||||||||||||||||||||||||    
T  7908715 agttttattccaagatgaatgcactttgtattctttcatcacccatatttcaa 7908663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 542 - 610
Target Start/End: Original strand, 45372004 - 45372072
Alignment:
Q  542 ataagggaagtgagttccctcaatttgtttccatgtattatctctcaatgagaaaatctctaaatgtga 610  Q
    ||||||||||||||| ||||||| || | |||| |||||||||||||||||||||| ||| ||||||||    
T  45372004 ataagggaagtgagtaccctcaagttctctccaagtattatctctcaatgagaaaaactccaaatgtga 45372072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 722 - 842
Target Start/End: Original strand, 45372184 - 45372304
Alignment:
Q  722 aggagacaaaggtatttgtttgtgaaatccagtggaaggattccataggtagatggtgaaagaacagtgcaaaagtacaaaccctcttcacgaacctata 821  Q
    |||||| |||||||||||||| ||||  |||||||| ||||||||||| |||| |||  ||  ||  ||||||| || ||||||||| || |||||| ||    
T  45372184 aggagaaaaaggtatttgtttctgaacaccagtggatggattccatagatagaaggttgaattaccatgcaaaaatataaaccctctacatgaaccttta 45372283  T
Q  822 atttgaagatcaaaataagat 842  Q
    |||| ||||||||||| ||||    
T  45372284 atttcaagatcaaaatgagat 45372304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 246 - 306
Target Start/End: Original strand, 45384532 - 45384592
Alignment:
Q  246 agaacacaagttttagtccaagacaaatgcactttgtattctttcatcacccatatttcaa 306  Q
    ||||||| ||| || ||||||||| |||||||||| |||||||||||||||||||||||||    
T  45384532 agaacacgagtctttgtccaagacgaatgcactttatattctttcatcacccatatttcaa 45384592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 426 - 510
Target Start/End: Original strand, 48735225 - 48735309
Alignment:
Q  426 attaaatcaaaggcaacaataacattctttcttaaatcatgatgaaaagccaaccaatgaatagccccattaaagagcgaccctg 510  Q
    |||||||||||| || ||||||||  ||| | ||||||||||||| ||||||||||||||||| |  ||||||||||| ||||||    
T  48735225 attaaatcaaagacagcaataacacccttacgtaaatcatgatgataagccaaccaatgaataccatcattaaagagcaaccctg 48735309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 258 - 306
Target Start/End: Original strand, 49043820 - 49043868
Alignment:
Q  258 ttagtccaagacaaatgcactttgtattctttcatcacccatatttcaa 306  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  49043820 ttagtccatgacgaatgcactttgtattctttcatcacccatatttcaa 49043868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 261 - 367
Target Start/End: Original strand, 45365875 - 45365984
Alignment:
Q  261 gtccaagacaaatgcactttgtattctttcatcacccatatttcaaat---ttattatcgtaatccaaagcccataggctaagaaattctccaaataccc 357  Q
    ||||||||| || ||||||| ||||||||||||||||||||||||| |   | |||||| ||||||| |||||| |  || | |||||||||||||||||    
T  45365875 gtccaagacgaacgcactttatattctttcatcacccatatttcaactgtatcattatcataatccatagcccaaaaactgaaaaattctccaaataccc 45365974  T
Q  358 ataaatcaca 367  Q
    | ||| ||||    
T  45365975 acaaaccaca 45365984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 426 - 509
Target Start/End: Original strand, 48147536 - 48147619
Alignment:
Q  426 attaaatcaaaggcaacaataacattctttcttaaatcatgatgaaaagccaaccaatgaatagccccattaaagagcgaccct 509  Q
    ||||||||||| |||| |||||||| | ||  ||||||||  ||||||||||||||||||||||||||| |||| || ||||||    
T  48147536 attaaatcaaatgcaataataacatcccttgctaaatcattgtgaaaagccaaccaatgaatagccccactaaaaagtgaccct 48147619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 427 - 502
Target Start/End: Complemental strand, 48870788 - 48870713
Alignment:
Q  427 ttaaatcaaaggcaacaataacattctttcttaaatcatgatgaaaagccaaccaatgaatagccccattaaagag 502  Q
    |||||||||||||||  ||||||||||||| |||| ||  | || |||||||||||||||||||||||||| ||||    
T  48870788 ttaaatcaaaggcaaggataacattctttcctaaaccagcacgataagccaaccaatgaatagccccattatagag 48870713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 427 - 502
Target Start/End: Complemental strand, 48886474 - 48886399
Alignment:
Q  427 ttaaatcaaaggcaacaataacattctttcttaaatcatgatgaaaagccaaccaatgaatagccccattaaagag 502  Q
    |||||||||||||||  ||||||||||||| |||| ||  | || |||||||||||||||||||||||||| ||||    
T  48886474 ttaaatcaaaggcaaggataacattctttcctaaaccagcacgataagccaaccaatgaatagccccattatagag 48886399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 459 - 510
Target Start/End: Complemental strand, 48898936 - 48898885
Alignment:
Q  459 aaatcatgatgaaaagccaaccaatgaatagccccattaaagagcgaccctg 510  Q
    |||||| |||||||||||||||||||||||||||||||| |||| |||||||    
T  48898936 aaatcacgatgaaaagccaaccaatgaatagccccattatagagtgaccctg 48898885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 198
Target Start/End: Original strand, 49040549 - 49040708
Alignment:
Q  39 actacctcattcttcttatttgtgccatcttcctaaacttgcttaatgtcaccagggagtgaaagtagagactctacatacaaggccacttgggatccat 138  Q
    ||||||||||||||||| |||||||||||||| ||| |||||| | |||||   ||||||||||| ||||||||   ||| || | || |||| ||||      
T  49040549 actacctcattcttcttgtttgtgccatcttcttaagcttgctaactgtcattggggagtgaaagcagagactccgtatataaagtcatttggaatcctg 49040648  T
Q  139 gtagatccttacagcaggagtgatactctaggaactgtcctttgtcattatacttcacca 198  Q
    ||  ||| | |||  |||||| || |||||| |||| ||||||||||||||| |||||||    
T  49040649 gtgcatcttcacaataggagttatgctctagaaactctcctttgtcattatatttcacca 49040708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 648 - 776
Target Start/End: Original strand, 7237764 - 7237889
Alignment:
Q  648 accatcaagtaatcatctcttgagtggtcatacccaaaaccataaaaataatttacgaatgaattgaaaccataaggagacaaaggtatttgtttgtgaa 747  Q
    |||| |||||||||||||||||| |||||||| |||||||||| | ||    || | ||| | ||| || || |||||||||  ||||||||||| | ||    
T  7237764 accaccaagtaatcatctcttgactggtcataaccaaaaccatgacaac---ttgctaataatttggaatcaaaaggagacacgggtatttgttttttaa 7237860  T
Q  748 atccagtggaaggattccataggtagatg 776  Q
    |||||||||| |||||||||| |||||||    
T  7237861 atccagtggatggattccatacgtagatg 7237889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 722 - 768
Target Start/End: Complemental strand, 48891372 - 48891326
Alignment:
Q  722 aggagacaaaggtatttgtttgtgaaatccagtggaaggattccata 768  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||    
T  48891372 aggagacaaaggtatttgtttgtgaagtccagtggatggattccata 48891326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 426 - 499
Target Start/End: Original strand, 7773651 - 7773724
Alignment:
Q  426 attaaatcaaaggcaacaataacattctttcttaaatcatgatgaaaagccaaccaatgaatagccccattaaa 499  Q
    ||||||||||||| |||||| ||||||   | ||||||| || | |||||||||||||||||||||||||||||    
T  7773651 attaaatcaaaggaaacaattacattccaacgtaaatcacgacgcaaagccaaccaatgaatagccccattaaa 7773724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 648 - 875
Target Start/End: Complemental strand, 7790123 - 7789899
Alignment:
Q  648 accatcaagtaatcatctcttgagtggtcatacccaaaaccataaaaataatttacgaatgaattgaaaccataaggagacaaaggtatttgtttgtgaa 747  Q
    |||| |||||||||||||||||| |||||||| ||||||||||    | ||| | | | ||| ||| || || | |||||||  ||||||||| | | ||    
T  7790123 accaccaagtaatcatctcttgactggtcataaccaaaaccat---gacaatgtgctattgatttggaatcaaagggagacaccggtatttgtgttttaa 7790027  T
Q  748 atccagtggaaggattccataggtagatggtgaaagaacagtgcaaaagtacaaaccctcttcacgaacctataatttgaagatcaaaataagatccagg 847  Q
    |||||||||| |||||||||| || |||| |   ||  | || |||||||| ||||||||| ||||||||| |||||| || |  |||||||||| | ||    
T  7790026 atccagtggatggattccataagtggatgtttggaggtcggtacaaaagtataaaccctctacacgaacctctaatttaaacaggaaaataagattctgg 7789927  T
Q  848 aagcataaatttaaggttctgtgaagca 875  Q
    ||||  ||| |||||||||  |||||||    
T  7789926 aagcgaaaaattaaggttcactgaagca 7789899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 258 - 367
Target Start/End: Complemental strand, 50669491 - 50669382
Alignment:
Q  258 ttagtccaagacaaatgcactttgtattctttcatcacccatatttcaaatttattatcgtaatccaaagcccataggctaagaaattctccaaataccc 357  Q
    |||||||||||  ||||||  ||| | |||||||||||||| |||| |||||| |||| ||  ||||||| ||| || || |||||||||||||||||||    
T  50669491 ttagtccaagatgaatgcaacttggaatctttcatcacccacatttgaaatttgttatggtcctccaaagtccaaagactgagaaattctccaaataccc 50669392  T
Q  358 ataaatcaca 367  Q
    | ||| ||||    
T  50669391 acaaaccaca 50669382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 258 - 306
Target Start/End: Complemental strand, 7766051 - 7766003
Alignment:
Q  258 ttagtccaagacaaatgcactttgtattctttcatcacccatatttcaa 306  Q
    |||||||| ||| ||| ||||||||||||||||||||||||||||||||    
T  7766051 ttagtccatgacgaatacactttgtattctttcatcacccatatttcaa 7766003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 262 - 306
Target Start/End: Complemental strand, 7786869 - 7786825
Alignment:
Q  262 tccaagacaaatgcactttgtattctttcatcacccatatttcaa 306  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||    
T  7786869 tccaagataaatgcacgttgtattctttcatcacccatatttcaa 7786825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 7801050 - 7800998
Alignment:
Q  254 agttttagtccaagacaaatgcactttgtattctttcatcacccatatttcaa 306  Q
    ||||||| |||||||| ||||||||||||| ||||||| ||||||||||||||    
T  7801050 agttttattccaagacgaatgcactttgtaatctttcaacacccatatttcaa 7800998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 426 - 498
Target Start/End: Original strand, 45371891 - 45371963
Alignment:
Q  426 attaaatcaaaggcaacaataacattctttcttaaatcatgatgaaaagccaaccaatgaatagccccattaa 498  Q
    |||||||||||||||| ||||||| || |   |||||||||| |||||| |||||||| ||||||||||||||    
T  45371891 attaaatcaaaggcaagaataacactcatcgataaatcatgacgaaaagacaaccaataaatagccccattaa 45371963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 258 - 306
Target Start/End: Complemental strand, 48853090 - 48853042
Alignment:
Q  258 ttagtccaagacaaatgcactttgtattctttcatcacccatatttcaa 306  Q
    |||||||||||| || ||||||||||||||||||| |||||||||||||    
T  48853090 ttagtccaagacgaacgcactttgtattctttcatgacccatatttcaa 48853042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 429 - 493
Target Start/End: Complemental strand, 48876090 - 48876026
Alignment:
Q  429 aaatcaaaggcaacaataacattctttcttaaatcatgatgaaaagccaaccaatgaatagcccc 493  Q
    |||||||||||||  ||||||||||||  |||||||| | || ||||||||||||||||||||||    
T  48876090 aaatcaaaggcaaggataacattcttttgtaaatcatcacgataagccaaccaatgaatagcccc 48876026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 458 - 502
Target Start/End: Original strand, 50250626 - 50250670
Alignment:
Q  458 taaatcatgatgaaaagccaaccaatgaatagccccattaaagag 502  Q
    |||||||| | ||||||||||||||||||||||||||||||||||    
T  50250626 taaatcataacgaaaagccaaccaatgaatagccccattaaagag 50250670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 50666728 - 50666676
Alignment:
Q  254 agttttagtccaagacaaatgcactttgtattctttcatcacccatatttcaa 306  Q
    |||||||||||||||  |||||||||||||||||| ||||||||||| |||||    
T  50666728 agttttagtccaagatgaatgcactttgtattcttacatcacccataattcaa 50666676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 42 - 113
Target Start/End: Complemental strand, 48871227 - 48871156
Alignment:
Q  42 acctcattcttcttatttgtgccatcttcctaaacttgcttaatgtcaccagggagtgaaagtagagactct 113  Q
    |||||||||||||| |||||| || |||| ||||| |||| | ||||||||||||||||||| | |||||||    
T  48871227 acctcattcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccagggagtgaaagcaaagactct 48871156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 42 - 113
Target Start/End: Complemental strand, 48876531 - 48876460
Alignment:
Q  42 acctcattcttcttatttgtgccatcttcctaaacttgcttaatgtcaccagggagtgaaagtagagactct 113  Q
    |||||||||||||| |||||| || |||| ||||| |||| | ||||||||||||||||||| | |||||||    
T  48876531 acctcattcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccagggagtgaaagcaaagactct 48876460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #56
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 42 - 113
Target Start/End: Complemental strand, 48886913 - 48886842
Alignment:
Q  42 acctcattcttcttatttgtgccatcttcctaaacttgcttaatgtcaccagggagtgaaagtagagactct 113  Q
    |||||||||||||| |||||| || |||| ||||| |||| | ||||||||||||||||||| | |||||||    
T  48886913 acctcattcttcttgtttgtgtcaccttcttaaacctgctcattgtcaccagggagtgaaagcaaagactct 48886842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #57
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 541 - 608
Target Start/End: Original strand, 49044121 - 49044188
Alignment:
Q  541 tataagggaagtgagttccctcaatttgtttccatgtattatctctcaatgagaaaatctctaaatgt 608  Q
    |||||||||||| |||  |||||||||  |||||| ||||||||||||||||||||| ||| ||||||    
T  49044121 tataagggaagttagtaacctcaatttcattccatctattatctctcaatgagaaaaactccaaatgt 49044188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #58
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 254 - 304
Target Start/End: Complemental strand, 7823382 - 7823332
Alignment:
Q  254 agttttagtccaagacaaatgcactttgtattctttcatcacccatatttc 304  Q
    ||||||| |||||||||||||||||||||| ||||| | ||||||||||||    
T  7823382 agttttattccaagacaaatgcactttgtaatctttaaacacccatatttc 7823332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #59
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 723 - 769
Target Start/End: Complemental strand, 48852622 - 48852576
Alignment:
Q  723 ggagacaaaggtatttgtttgtgaaatccagtggaaggattccatag 769  Q
    ||||||||||||||||||||||||| ||| ||||| |||||||||||    
T  48852622 ggagacaaaggtatttgtttgtgaactccggtggatggattccatag 48852576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #60
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 248 - 306
Target Start/End: Original strand, 49048197 - 49048255
Alignment:
Q  248 aacacaagttttagtccaagacaaatgcactttgtattctttcatcacccatatttcaa 306  Q
    |||| |||| |||||||| ||| |||||||||| || ||||||||||||||||||||||    
T  49048197 aacaaaagtcttagtccatgacgaatgcactttatactctttcatcacccatatttcaa 49048255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #61
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 7766233 - 7766180
Alignment:
Q  154 aggagtgatactctaggaactgtcctttgtcattatacttcaccaatctagtac 207  Q
    ||||||||| | |||  |||||||||||||||||||||||||||||| ||||||    
T  7766233 aggagtgatgccctaaaaactgtcctttgtcattatacttcaccaatttagtac 7766180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #62
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 648 - 875
Target Start/End: Complemental strand, 7771438 - 7771214
Alignment:
Q  648 accatcaagtaatcatctcttgagtggtcatacccaaaaccataaaaataatttacgaatgaattgaaaccataaggagacaaaggtatttgtttgtgaa 747  Q
    |||| |||||||||||||||||| |||||||| ||||||||||    | ||| | | | ||| ||| || || | |||||||  ||||||||| | | ||    
T  7771438 accaccaagtaatcatctcttgactggtcataaccaaaaccat---gacaatgtgctattgatttggaatcaaagggagacaccggtatttgtgttttaa 7771342  T
Q  748 atccagtggaaggattccataggtagatggtgaaagaacagtgcaaaagtacaaaccctcttcacgaacctataatttgaagatcaaaataagatccagg 847  Q
    ||||| |||| |||||||||| || |||| |   ||  | || |||||||| ||||||||| ||||||||| |||||| || |  |||||||||| | ||    
T  7771341 atccaatggatggattccataagtggatgtttggaggtcggtacaaaagtataaaccctctacacgaacctctaatttcaacaggaaaataagattctgg 7771242  T
Q  848 aagcataaatttaaggttctgtgaagca 875  Q
    ||||  ||| |||||||||  |||||||    
T  7771241 aagcgaaaaattaaggttcactgaagca 7771214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #63
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 426 - 499
Target Start/End: Complemental strand, 7771636 - 7771563
Alignment:
Q  426 attaaatcaaaggcaacaataacattctttcttaaatcatgatgaaaagccaaccaatgaatagccccattaaa 499  Q
    ||||||||||| | |||||| ||||||  | |||||||| |  || ||||||||||||||||||||||||||||    
T  7771636 attaaatcaaacgtaacaatgacattcagttttaaatcacggcgataagccaaccaatgaatagccccattaaa 7771563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #64
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 7787055 - 7787002
Alignment:
Q  154 aggagtgatactctaggaactgtcctttgtcattatacttcaccaatctagtac 207  Q
    ||||||||| | |||  |||||||||||||||||||||||||||||| ||||||    
T  7787055 aggagtgatgccctaaaaactgtcctttgtcattatacttcaccaatttagtac 7787002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #65
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 426 - 499
Target Start/End: Complemental strand, 7790321 - 7790248
Alignment:
Q  426 attaaatcaaaggcaacaataacattctttcttaaatcatgatgaaaagccaaccaatgaatagccccattaaa 499  Q
    ||||||||||| | |||||| ||||||  | |||||||| |  || ||||||||||||||||||||||||||||    
T  7790321 attaaatcaaacgtaacaatgacattcagttttaaatcacggcgataagccaaccaatgaatagccccattaaa 7790248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #66
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 258 - 358
Target Start/End: Original strand, 37826642 - 37826745
Alignment:
Q  258 ttagtccaagacaaatgcactttgtattctttcatcacccatatttcaaatttattatcgtaa---tccaaagcccataggctaagaaattctccaaata 354  Q
    |||||||||||| |||||| |||||||||||||||||||| || || || | ||| ||  |||    |||  |||||||| |||||||||||||||||||    
T  37826642 ttagtccaagacgaatgcagtttgtattctttcatcacccgtaatttaagtgtatgattataactgcccatggcccatagactaagaaattctccaaata 37826741  T
Q  355 ccca 358  Q
    ||||    
T  37826742 ccca 37826745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #67
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 426 - 499
Target Start/End: Original strand, 45366043 - 45366116
Alignment:
Q  426 attaaatcaaaggcaacaataacattctttcttaaatcatgatgaaaagccaaccaatgaatagccccattaaa 499  Q
    ||||||||||||| || |||||||| |  ||  ||| || |||||||||| |||||||||||||||||||||||    
T  45366043 attaaatcaaaggaaataataacatccaatcgcaaaccaagatgaaaagcaaaccaatgaatagccccattaaa 45366116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #68
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 722 - 771
Target Start/End: Complemental strand, 48898679 - 48898630
Alignment:
Q  722 aggagacaaaggtatttgtttgtgaaatccagtggaaggattccataggt 771  Q
    |||||||||||||||||||||||||  ||| ||||| |||||||||||||    
T  48898679 aggagacaaaggtatttgtttgtgagctccggtggatggattccataggt 48898630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #69
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 719 - 772
Target Start/End: Original strand, 49048696 - 49048749
Alignment:
Q  719 ataaggagacaaaggtatttgtttgtgaaatccagtggaaggattccataggta 772  Q
    |||||||||||||||||||||| |||||| || |||||| |||||||| |||||    
T  49048696 ataaggagacaaaggtatttgtctgtgaactctagtggatggattccaaaggta 49048749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #70
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 724 - 825
Target Start/End: Original strand, 50250907 - 50251008
Alignment:
Q  724 gagacaaaggtatttgtttgtgaaatccagtggaaggattccataggtagatggtgaaagaacagtgcaaaagtacaaaccctcttcacgaacctataat 823  Q
    ||||||||||||||||| ||||||  || ||||| |||||||||||||||| | |  || ||||||| |||| || ||| ||||| || |||||| ||||    
T  50250907 gagacaaaggtatttgtatgtgaagcccggtggatggattccataggtagaggcttgaaaaacagtggaaaaatataaatcctctacatgaacctttaat 50251006  T
Q  824 tt 825  Q
    ||    
T  50251007 tt 50251008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #71
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 562 - 691
Target Start/End: Complemental strand, 50669181 - 50669052
Alignment:
Q  562 caatttgtttccatgtattatctctcaatgagaaaatctctaaatgtgatataacaccaactaagtttggataatgtgaaattgataccatcaagtaatc 661  Q
    ||||||||||||||||||||||||||| |||||||| ||| |||| || |  || | || | | | |||||| ||  || | ||| || | |||||||||    
T  50669181 caatttgtttccatgtattatctctcactgagaaaaactcaaaatttggtgaaatatcatccatggttggatcataggacaatgaaacaaccaagtaatc 50669082  T
Q  662 atctcttgagtggtcatacccaaaaccata 691  Q
    |||||||||  ||||||| |||||||||||    
T  50669081 atctcttgaccggtcataaccaaaaccata 50669052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #72
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 7878921 - 7878885
Alignment:
Q  171 aactgtcctttgtcattatacttcaccaatctagtac 207  Q
    ||||||||||| |||||||||||||||||||||||||    
T  7878921 aactgtcctttatcattatacttcaccaatctagtac 7878885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #73
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 137
Target Start/End: Original strand, 48155816 - 48155912
Alignment:
Q  41 tacctcattcttcttatttgtgccatcttcctaaacttgcttaatgtcaccagggagtgaaagtagagactctacatacaaggccacttgggatcca 137  Q
    ||||||||||||||| ||||||   ||||| ||  |||||  | ||||||||||||||||||| | |||||||  ||||| || |||||||||||||    
T  48155816 tacctcattcttcttgtttgtgatgtcttcttaggcttgcacattgtcaccagggagtgaaagcaaagactctgtatacacggtcacttgggatcca 48155912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #74
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 722 - 774
Target Start/End: Original strand, 48170695 - 48170747
Alignment:
Q  722 aggagacaaaggtatttgtttgtgaaatccagtggaaggattccataggtaga 774  Q
    ||||||||||||||||||||| |||| ||  ||||| ||||||||||||||||    
T  48170695 aggagacaaaggtatttgtttatgaactcgggtggatggattccataggtaga 48170747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #75
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 721 - 776
Target Start/End: Original strand, 7773940 - 7773995
Alignment:
Q  721 aaggagacaaaggtatttgtttgtgaaatccagtggaaggattccataggtagatg 776  Q
    ||||||||  |||||||||||| | |||||||||||| |||||||||| |||||||    
T  7773940 aaggagacccaggtatttgttttttaaatccagtggatggattccatatgtagatg 7773995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #76
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 542 - 597
Target Start/End: Complemental strand, 7908465 - 7908410
Alignment:
Q  542 ataagggaagtgagttccctcaatttgtttccatgtattatctctcaatgagaaaa 597  Q
    ||||||||||| | | |||||||||| |||||||||||||||||| | ||||||||    
T  7908465 ataagggaagtaattaccctcaatttctttccatgtattatctctaactgagaaaa 7908410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #77
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 560 - 611
Target Start/End: Original strand, 48705330 - 48705381
Alignment:
Q  560 ctcaatttgtttccatgtattatctctcaatgagaaaatctctaaatgtgat 611  Q
    |||||||| ||||||||||||| ||||||||||||||| ||| || ||||||    
T  48705330 ctcaatttctttccatgtattaactctcaatgagaaaaactcaaagtgtgat 48705381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #78
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 254 - 293
Target Start/End: Original strand, 48735059 - 48735098
Alignment:
Q  254 agttttagtccaagacaaatgcactttgtattctttcatc 293  Q
    |||||||||||||||| ||| |||||||||||||||||||    
T  48735059 agttttagtccaagacgaattcactttgtattctttcatc 48735098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #79
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 261 - 367
Target Start/End: Complemental strand, 48870966 - 48870857
Alignment:
Q  261 gtccaagacaaatgcactttgtattctttcatcacccatatttcaaatttattatc---gtaatccaaagcccataggctaagaaattctccaaataccc 357  Q
    ||||||||| | | |||||||||||| ||||||||||| ||||||| | |||||||    ||||||| |||  |||| || |||||||| ||||||||||    
T  48870966 gtccaagacgagttcactttgtattcattcatcacccacatttcaattgtattatcattataatccatagcatatagactgagaaattccccaaataccc 48870867  T
Q  358 ataaatcaca 367  Q
    | ||| ||||    
T  48870866 acaaaccaca 48870857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #80
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 261 - 367
Target Start/End: Complemental strand, 48876270 - 48876161
Alignment:
Q  261 gtccaagacaaatgcactttgtattctttcatcacccatatttcaaatttattatc---gtaatccaaagcccataggctaagaaattctccaaataccc 357  Q
    ||||||||| | | |||||||||||| ||||||||||| ||||||| | |||||||    ||||||| |||  |||| || |||||||| ||||||||||    
T  48876270 gtccaagacgagttcactttgtattcattcatcacccacatttcaattgtattatcattataatccatagcatatagactgagaaattccccaaataccc 48876171  T
Q  358 ataaatcaca 367  Q
    | ||| ||||    
T  48876170 acaaaccaca 48876161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #81
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 261 - 367
Target Start/End: Complemental strand, 48886652 - 48886543
Alignment:
Q  261 gtccaagacaaatgcactttgtattctttcatcacccatatttcaaatttattatc---gtaatccaaagcccataggctaagaaattctccaaataccc 357  Q
    ||||||||| | | |||||||||||| ||||||||||| ||||||| | |||||||    ||||||| |||  |||| || |||||||| ||||||||||    
T  48886652 gtccaagacgagttcactttgtattcattcatcacccacatttcaattgtattatcattataatccatagcatatagactgagaaattccccaaataccc 48886553  T
Q  358 ataaatcaca 367  Q
    | ||| ||||    
T  48886552 acaaaccaca 48886543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #82
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 542 - 597
Target Start/End: Complemental strand, 48891558 - 48891503
Alignment:
Q  542 ataagggaagtgagttccctcaatttgtttccatgtattatctctcaatgagaaaa 597  Q
    ||||||||| | ||| |||||||||| ||||||  |||||||||||||||||||||    
T  48891558 ataagggaaataagtaccctcaatttctttccacatattatctctcaatgagaaaa 48891503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #83
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 258 - 305
Target Start/End: Complemental strand, 50672907 - 50672860
Alignment:
Q  258 ttagtccaagacaaatgcactttgtattctttcatcacccatatttca 305  Q
    |||||||| ||| |||||| |||||||| |||||||||||||||||||    
T  50672907 ttagtccacgacgaatgcaatttgtattgtttcatcacccatatttca 50672860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #84
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 561 - 611
Target Start/End: Complemental strand, 7771507 - 7771457
Alignment:
Q  561 tcaatttgtttccatgtattatctctcaatgagaaaatctctaaatgtgat 611  Q
    ||||||| |||||| ||||||||||| |||||||||| ||| |||||||||    
T  7771507 tcaatttctttccacgtattatctctaaatgagaaaacctccaaatgtgat 7771457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #85
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 561 - 611
Target Start/End: Complemental strand, 7790192 - 7790142
Alignment:
Q  561 tcaatttgtttccatgtattatctctcaatgagaaaatctctaaatgtgat 611  Q
    ||||||| |||||| ||||||||||| |||||||||| ||| |||||||||    
T  7790192 tcaatttctttccacgtattatctctaaatgagaaaacctccaaatgtgat 7790142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #86
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 569 - 611
Target Start/End: Original strand, 45366186 - 45366228
Alignment:
Q  569 tttccatgtattatctctcaatgagaaaatctctaaatgtgat 611  Q
    ||||||||||||| ||||||||||||||||||| || ||||||    
T  45366186 tttccatgtattagctctcaatgagaaaatctccaagtgtgat 45366228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #87
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 207
Target Start/End: Complemental strand, 7771930 - 7771897
Alignment:
Q  174 tgtcctttgtcattatacttcaccaatctagtac 207  Q
    |||||||| |||||||||||||||||||||||||    
T  7771930 tgtcctttatcattatacttcaccaatctagtac 7771897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #88
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 207
Target Start/End: Complemental strand, 7790615 - 7790582
Alignment:
Q  174 tgtcctttgtcattatacttcaccaatctagtac 207  Q
    |||||||| |||||||||||||||||||||||||    
T  7790615 tgtcctttatcattatacttcaccaatctagtac 7790582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #89
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 426 - 499
Target Start/End: Complemental strand, 7908572 - 7908499
Alignment:
Q  426 attaaatcaaaggcaacaataacattctttcttaaatcatgatgaaaagccaaccaatgaatagccccattaaa 499  Q
    |||||||||||||||||||| ||| ||   | ||||||| || | |||||||||||||||||| | ||||||||    
T  7908572 attaaatcaaaggcaacaatgacagtcaaacctaaatcacgacgtaaagccaaccaatgaataacaccattaaa 7908499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #90
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 257 - 306
Target Start/End: Complemental strand, 47208287 - 47208238
Alignment:
Q  257 tttagtccaagacaaatgcactttgtattctttcatcacccatatttcaa 306  Q
    ||||||||||||  | || |||||||||||||||||||||| ||||||||    
T  47208287 tttagtccaagatgattgtactttgtattctttcatcacccttatttcaa 47208238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #91
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 642 - 691
Target Start/End: Original strand, 48735417 - 48735466
Alignment:
Q  642 attgataccatcaagtaatcatctcttgagtggtcatacccaaaaccata 691  Q
    ||||| |||| ||||||||||||| || | ||||||||||||||||||||    
T  48735417 attgaaaccaccaagtaatcatctgttaaatggtcatacccaaaaccata 48735466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #92
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 642 - 691
Target Start/End: Original strand, 50250816 - 50250865
Alignment:
Q  642 attgataccatcaagtaatcatctcttgagtggtcatacccaaaaccata 691  Q
    ||||| |||| ||| ||||||||| ||||||||||||| |||||||||||    
T  50250816 attgaaaccaccaaataatcatctgttgagtggtcataaccaaaaccata 50250865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #93
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 457 - 502
Target Start/End: Complemental strand, 50669289 - 50669244
Alignment:
Q  457 ttaaatcatgatgaaaagccaaccaatgaatagccccattaaagag 502  Q
    ||||||||| | ||||||||||||||| ||||||| ||||||||||    
T  50669289 ttaaatcataacgaaaagccaaccaataaatagcctcattaaagag 50669244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 128; Significance: 1e-65; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 271 - 833
Target Start/End: Complemental strand, 179454 - 178892
Alignment:
Q  271 aatgcactttgtattctttcatcacccatatttcaaatttat---tatcgtaatccaaagcccataggctaagaaattctccaaatacccataaatcaca 367  Q
    |||||||||||||||||||||||||||||||||||| | |||   |||| ||||||| ||||||||  || ||||||| |||||||||||||| ||||||    
T  179454 aatgcactttgtattctttcatcacccatatttcaactgtatcattatcataatccatagcccatatactgagaaattgtccaaatacccatacatcaca 179355  T
Q  368 ctttgtagattcatagtccacatcaagtgggagaggaatctcaaaaaggtattttttaattaaatcaaaggcaacaataacattctttcttaa---atca 464  Q
     ||||||| ||||||||| | ||||| ||||||||||||||||||||| |   |||| |||| ||||||||||| ||||| || | ||  |||   ||||    
T  179354 atttgtagcttcatagtcaatatcaattgggagaggaatctcaaaaagttcccttttgattagatcaaaggcaagaataagatccatttgtaaatgatca 179255  T
Q  465 tgatgaaaagccaaccaatgaatagccccattaaagagcgaccctgnnnnnnnggggtca-ccgtacaagacattcgtataagggaagtgagttccctca 563  Q
    ||| ||||||  ||||||||||||||||||||||| || || |||        ||||| | | ||| | || ||| ||||||||| ||||| | ||||||    
T  179254 tgacgaaaagagaaccaatgaatagccccattaaaaagagagcctattattttggggtaatcagtagagga-attggtataagggcagtgaataccctca 179156  T
Q  564 atttgtttccatgtattatctctcaatgagaaaatctctaaatgtgatataacaccaactaagtttggataatgtgaaattgataccatcaagtaatcat 663  Q
    |||| ||||||||||||||||||||||||||||||||| |||||     ||  |  | |||| || || | ||| |||||||| |||| |||||||||||    
T  179155 atttctttccatgtattatctctcaatgagaaaatctccaaatg---cttagtattagctaatttggggtcatgagaaattgacaccaacaagtaatcat 179059  T
Q  664 ctcttgagtggtcatacccaaaaccataaaaataatttacgaatgaattgaaaccataaggagacaaaggtatttgtttgtgaaatccagtggaaggatt 763  Q
    || |||| |  ||||||||||||||||| ||||||||| |||   ||  | |||||||| |||||||||||| |||||| |||||||||||||| || ||    
T  179058 ctgttgactcctcatacccaaaaccatagaaataattt-cga--taagaggaaccataacgagacaaaggtaattgtttatgaaatccagtggatgggtt 178962  T
Q  764 ccataggtagatggtgaaagaacagtgcaaaagtacaaaccctcttcacgaacctataatttgaagatca 833  Q
    |||||  ||||||   ||||||| ||| | ||||| ||| ||||| || ||| || ||| ||||||||||    
T  178961 ccatatatagatgtcaaaagaaccgtgaagaagtaaaaagcctctacaagaaactttaaattgaagatca 178892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 238 - 510
Target Start/End: Complemental strand, 9120192 - 9119914
Alignment:
Q  238 caatagacagaacacaagttttagtccaagacaaatgcactttgtattctttcatcacccatatttcaaatttattat---cgtaatccaaagcccatag 334  Q
    ||||||||| ||||  ||||||  |||||||  |||||||||||||||||||||||||||||||||||| | ||| ||   |  |||||| ||||||||     
T  9120192 caatagacaaaacaagagttttcttccaagaggaatgcactttgtattctttcatcacccatatttcaactgtatcattagcaaaatccatagcccatat 9120093  T
Q  335 gctaagaaattctccaaatacccataaatcacactttgtagattcatagtccacatcaagtgggagaggaatctcaaaaaggtattttttaattaaatca 434  Q
     || |||||||||||||||||||| | |||||| ||||||| |||||| || | ||||| ||||||||||||||||||||| |   |||| |||||||||    
T  9120092 actgagaaattctccaaatacccacacatcacaatttgtagcttcataatcaatatcaattgggagaggaatctcaaaaagttccgttttgattaaatca 9119993  T
Q  435 aaggcaacaataacattctttcttaa---atcatgatgaaaagccaaccaatgaatagccccattaaagagcgaccctg 510  Q
    ||||||| ||||| || ||||  |||   ||||||| ||||||| ||||||||||||| |||||| || || |||||||    
T  9119992 aaggcaagaataagatccttttgtaaatgatcatgacgaaaagcgaaccaatgaatagacccattgaaaagagaccctg 9119914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 258 - 306
Target Start/End: Original strand, 42561985 - 42562033
Alignment:
Q  258 ttagtccaagacaaatgcactttgtattctttcatcacccatatttcaa 306  Q
    |||||||||||  ||||||||||||||||||||||||||||||| ||||    
T  42561985 ttagtccaagatgaatgcactttgtattctttcatcacccatatatcaa 42562033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 722 - 842
Target Start/End: Original strand, 42562446 - 42562566
Alignment:
Q  722 aggagacaaaggtatttgtttgtgaaatccagtggaaggattccataggtagatggtgaaagaacagtgcaaaagtacaaaccctcttcacgaacctata 821  Q
    |||||||||||||||||||||||||  |||  |||| |||||||||||||||| |     |  ||| |||||||||| ||||||||| ||||||||| ||    
T  42562446 aggagacaaaggtatttgtttgtgatgtccgatggatggattccataggtagaagcatgcaccacaatgcaaaagtataaaccctctacacgaaccttta 42562545  T
Q  822 atttgaagatcaaaataagat 842  Q
    |||  || ||| |||||||||    
T  42562546 attccaatatcgaaataagat 42562566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 653 - 768
Target Start/End: Complemental strand, 29696241 - 29696126
Alignment:
Q  653 caagtaatcatctcttgagtggtcatacccaaaaccataaaaataatttacgaatgaattgaaaccataaggagacaaaggtatttgtttgtgaaatcca 752  Q
    ||||||||||||| |||| | |||||||||||||||||| ||||||||| |   || |||| || ||   | ||  ||||||||| |||||||||||||     
T  29696241 caagtaatcatctgttgactcgtcatacccaaaaccatagaaataatttgcatctggattggaatcaattgtagtaaaaggtattcgtttgtgaaatccg 29696142  T
Q  753 gtggaaggattccata 768  Q
    ||||| ||||||||||    
T  29696141 gtggatggattccata 29696126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 202
Target Start/End: Complemental strand, 9120424 - 9120270
Alignment:
Q  48 ttcttcttatttgtgccatcttcctaaacttgcttaatgtcaccagggagtgaaagtagagactctacatacaaggccacttgggatccatgtagatcct 147  Q
    |||||||| |||||| ||||| | ||| |||| | | ||||||||||||||||||| |||||||||  ||| |  ||||||| || |||||||  |        
T  9120424 ttcttcttgtttgtgtcatctccttaagcttgttcattgtcaccagggagtgaaagcagagactctgtataaagagccacttcggttccatgtgtactgc 9120325  T
Q  148 tacagcaggagtgatactctaggaactgtcctttgtcattatacttcaccaatct 202  Q
    || |  || ||||  ||||||  ||||||||||||||||||||||||||||||||    
T  9120324 tagaatagtagtgccactctatcaactgtcctttgtcattatacttcaccaatct 9120270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 425 - 506
Target Start/End: Complemental strand, 29696472 - 29696391
Alignment:
Q  425 aattaaatcaaaggcaacaataacattctttcttaaatcatgatgaaaagccaaccaatgaatagccccattaaagagcgac 506  Q
    |||||||| ||||||||||||||||  | ||  || ||||| | ||||||||||||| ||||||||||||||  ||||||||    
T  29696472 aattaaatgaaaggcaacaataacaggcattgatatatcattacgaaaagccaaccagtgaatagccccatttgagagcgac 29696391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 261 - 306
Target Start/End: Complemental strand, 29688535 - 29688490
Alignment:
Q  261 gtccaagacaaatgcactttgtattctttcatcacccatatttcaa 306  Q
    ||||||||| | ||||| ||||||| ||||||||||||||||||||    
T  29688535 gtccaagacgattgcacattgtattttttcatcacccatatttcaa 29688490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 7e-33; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 263 - 873
Target Start/End: Original strand, 47451557 - 47452173
Alignment:
Q  263 ccaagacaaatgcactttgtattctttcatcacccatatttcaaatttattatcgt---aatccaaagcccataggctaagaaattctccaaatacccat 359  Q
    ||||||| |||  ||||||||||||||||||||||||||||||| | ||| ||  |   |||||| | ||| ||| |||||||||||||||||||||||     
T  47451557 ccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatccagaacccttagactaagaaattctccaaatacccac 47451656  T
Q  360 aaatcacactttgtagattcatagtccacatcaagtgggagaggaatctcaaaaaggtattttttaattaaatcaaaggcaacaataacattctttctta 459  Q
    ||| |||| || |||| ||||| ||| | ||||  ||| | |   |  || ||||  | | |||  ||||||||||| ||| ||||||||||| |   ||    
T  47451657 aaaccacaattggtaggttcatggtcaaaatcatctggcaaattcacatctaaaaattttctttccattaaatcaaatgcagcaataacattcatggata 47451756  T
Q  460 aatcatgatgaaaagccaaccaatgaatagccccattaaagagcgaccctgnnnnnnnggggtcaccgtacaagacattcgtataagggaagtgagttcc 559  Q
     ||||||| ||||||||||||||| |||||||||||| |||||| |||||         || ||| |  ||| || |||| |||||||||||||||| ||    
T  47451757 tatcatgacgaaaagccaaccaataaatagccccattgaagagccaccctactcta---ggatcatc--acatga-attcatataagggaagtgagtacc 47451850  T
Q  560 ---------ctcaatttgtttccatgtattatctctcaatgagaaaatctctaaatgtgatataacaccaactaagtttggataatgtgaaattgatacc 650  Q
             |||||||| |||||||| |||| ||||||| || |||| |||||| ||||||| || |  | || ||||||||| ||  || ||| | |||    
T  47451851 agtagtacactcaatttctttccatgcattagctctcaacgaaaaaaactctaagtgtgataaaaaattagctgagtttggatcatcggacattaaaacc 47451950  T
Q  651 atcaagtaatcatctcttgagtggtcatacccaaaaccataaaaataatttacgaatgaattgaaaccataaggagacaaaggtatttgtttgtgaaatc 750  Q
    |  |||||||||||| || | | |||||||||||| | ||||||||||||| |   |  |||| ||||| |||||| |||||||||||||||||||| ||    
T  47451951 actaagtaatcatctgttaactcgtcatacccaaaccaataaaaataatttgcatctacattggaaccaaaaggaggcaaaggtatttgtttgtgaactc 47452050  T
Q  751 cagtggaaggattccataggtagatggtgaaagaacagtgcaaaagtacaaaccctcttcacgaacctataatttgaagatcaaaataagatccaggaag 850  Q
    ||||||| |||||||||| ||||||| |  |||||||    ||||||| ||||||||| || |||||| |||||| ||||| | | | ||||   |||||    
T  47452051 cagtggatggattccatatgtagatgtttgaagaacaacttaaaagtataaaccctctacatgaacctttaatttcaagattatactcagattggggaag 47452150  T
Q  851 cataaatttaaggttctgtgaag 873  Q
    || ||| ||||||||| ||||||    
T  47452151 caaaaaattaaggttcggtgaag 47452173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 254 - 503
Target Start/End: Original strand, 11015139 - 11015385
Alignment:
Q  254 agttttagtccaagacaaatgcactttgtattctttcatcacccatatttcaaatttattatcgtaatccaaagcccataggctaagaaattctccaaat 353  Q
    |||||||  ||||||| |||||||||||||||||||||| ||||||||||||| | |   |||    |||| ||||||||| || |||||||||||||||    
T  11015139 agttttaacccaagacgaatgcactttgtattctttcataacccatatttcaactgttccatc---ctccatagcccatagacttagaaattctccaaat 11015235  T
Q  354 acccataaatcacactttgtagattcatagtccacatcaagtgggagaggaatctcaaaaaggtattttttaattaaatcaaaggcaacaataacattct 453  Q
    | ||| |||||||| | | ||| ||||||||| | | ||  ||| | | | ||||| ||||| |   |||  | |||||||||| |||||||||||| |     
T  11015236 atccacaaatcacaatctataggttcatagtcaaaaccatctggaaaatgcatctccaaaagtttcctttccactaaatcaaagccaacaataacatcca 11015335  T
Q  454 ttcttaaatcatgatgaaaagccaaccaatgaatagccccattaaagagc 503  Q
    ||  |||||||||  ||||||  ||||||||||||| |||||||||||||    
T  11015336 ttgataaatcatggcgaaaagagaaccaatgaatagtcccattaaagagc 11015385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 258 - 509
Target Start/End: Original strand, 11005580 - 11005828
Alignment:
Q  258 ttagtccaagacaaatgcactttgtattctttcatcacccatatttcaaatttattatcgtaatccaaagcccataggctaagaaattctccaaataccc 357  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||| | | | |||     ||| ||||||||| ||||||||||||||||||| ||    
T  11005580 ttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttcatc---ccccatagcccatagactaagaaattctccaaatatcc 11005676  T
Q  358 ataaatcacactttgtagattcatagtccacatcaagtgggagaggaatctcaaaaaggtattttttaattaaatcaaaggcaacaataacattctttct 457  Q
    | |||||||| | | ||| |||||  || | | ||  ||| | ||| ||||| ||||| |   |||  | |||||||||| |||||||||||| | ||      
T  11005677 acaaatcacaatctataggttcatgatcaaaaccatatggaaaaggcatctctaaaagtttcctttccactaaatcaaagccaacaataacatccattga 11005776  T
Q  458 taaatcatgatgaaaagccaaccaatgaatagccccattaaagagcgaccct 509  Q
     ||||||||  ||||||  ||||||||||||| ||||||||| |||| ||||    
T  11005777 caaatcatggcgaaaagagaaccaatgaatagtcccattaaaaagcgtccct 11005828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 729 - 873
Target Start/End: Original strand, 11015641 - 11015785
Alignment:
Q  729 aaaggtatttgtttgtgaaatccagtggaaggattccataggtagatggtgaaagaacagtgcaaaagtacaaaccctcttcacgaacctataatttgaa 828  Q
    ||||||||||||||||||  |||||| || |||||||||||||||||| |  |||||||   ||||| || ||| ||||| || |||| | |||||| ||    
T  11015641 aaaggtatttgtttgtgatgtccagttgatggattccataggtagatgtttgaagaacaagtcaaaactataaatcctctacatgaacttttaatttcaa 11015740  T
Q  829 gatcaaaataagatccaggaagcataaatttaaggttctgtgaag 873  Q
    ||  | |||||||| | ||| ||||||| ||||||||| ||||||    
T  11015741 gactagaataagattctggaggcataaaattaaggttcagtgaag 11015785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 258 - 306
Target Start/End: Original strand, 11024155 - 11024203
Alignment:
Q  258 ttagtccaagacaaatgcactttgtattctttcatcacccatatttcaa 306  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||    
T  11024155 ttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 11024203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 644 - 691
Target Start/End: Original strand, 11005990 - 11006037
Alignment:
Q  644 tgataccatcaagtaatcatctcttgagtggtcatacccaaaaccata 691  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||    
T  11005990 tgataccaccaagtaatcatctcttgaatggtcatacccaaaaccata 11006037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 644 - 691
Target Start/End: Original strand, 11024565 - 11024612
Alignment:
Q  644 tgataccatcaagtaatcatctcttgagtggtcatacccaaaaccata 691  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||    
T  11024565 tgataccaccaagtaatcatctcttgaatggtcatacccaaaaccata 11024612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 644 - 691
Target Start/End: Original strand, 11015553 - 11015600
Alignment:
Q  644 tgataccatcaagtaatcatctcttgagtggtcatacccaaaaccata 691  Q
    |||||||| |||||||||||||||| | ||||||||||||||||||||    
T  11015553 tgataccaccaagtaatcatctcttaaatggtcatacccaaaaccata 11015600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 201
Target Start/End: Original strand, 47451328 - 47451453
Alignment:
Q  76 cttgcttaatgtcaccagggagtgaaagtagagactctacatacaaggccacttgggatccatgtagatccttacagcaggagtgatactctaggaactg 175  Q
    |||||| | ||||||| || |||||||| |||||||||   ||||   |||||||| |||||  | |||| |||||  ||||  ||| |||||  |||||    
T  47451328 cttgctcattgtcaccgggaagtgaaagcagagactctgtgtacataaccacttggcatccacatggatcgttacaataggaacgatgctctaacaactg 47451427  T
Q  176 tcctttgtcattatacttcaccaatc 201  Q
    |||||||||||||||||| |||||||    
T  47451428 tcctttgtcattatacttaaccaatc 47451453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 1e-22; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 721 - 828
Target Start/End: Complemental strand, 48883759 - 48883652
Alignment:
Q  721 aaggagacaaaggtatttgtttgtgaaatccagtggaaggattccataggtagatggtgaaagaacagtgcaaaagtacaaaccctcttcacgaacctat 820  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||| | ||||| || ||||||  |||||||  | ||||||||| ||||||||| |    
T  48883759 aaggagacaaaggtatttgtttgtgaaatccagtgtatggattccatatgcagatgttggaagaaccatgcaaaaacagaaaccctctacacgaaccttt 48883660  T
Q  821 aatttgaa 828  Q
    ||||||||    
T  48883659 aatttgaa 48883652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 258 - 312
Target Start/End: Complemental strand, 48884233 - 48884179
Alignment:
Q  258 ttagtccaagacaaatgcactttgtattctttcatcacccatatttcaaatttat 312  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||    
T  48884233 ttagtccaagacatatgcactttgtattctttcatcacctatatttcaactttat 48884179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 426 - 500
Target Start/End: Complemental strand, 48884068 - 48883993
Alignment:
Q  426 attaaatcaaaggcaacaataacattctttcttaaatcatgatgaaaag-ccaaccaatgaatagccccattaaag 500  Q
    ||||||||||||||| |||||| || |   |||||||||| | |||||  ||||||||||||||||||||||||||    
T  48884068 attaaatcaaaggcagcaataatatccacacttaaatcataacgaaaaaaccaaccaatgaatagccccattaaag 48883993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 546 - 612
Target Start/End: Complemental strand, 48883946 - 48883880
Alignment:
Q  546 gggaagtgagttccctcaatttgtttccatgtattatctctcaatgagaaaatctctaaatgtgata 612  Q
    ||||||||||   ||||||||| ||||||  ||||||||||||||||||||  ||| ||||||||||    
T  48883946 gggaagtgagcatcctcaatttctttccacatattatctctcaatgagaaacactccaaatgtgata 48883880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 9e-17; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 258 - 509
Target Start/End: Complemental strand, 21016230 - 21015982
Alignment:
Q  258 ttagtccaagacaaatgcactttgtattctttcatcacccatatttcaaatttattatcgtaatccaaagcccataggctaagaaattctccaaataccc 357  Q
    |||||||||||| |||| ||||||||||||||||| ||||||||||||| | ||| |     ||||| || |||||  || | |||||| || |||||||    
T  21016230 ttagtccaagacgaatgtactttgtattctttcataacccatatttcaactatatcact---atccatagtccatacactcaaaaattcaccgaataccc 21016134  T
Q  358 ataaatcacactttgtagattcatagtccacatcaagtgggagaggaatctcaaaaaggtattttttaattaaatcaaaggcaacaataacattctttct 457  Q
    | |||||||| | | ||| |||||  |||| ||||   || | ||  || || ||||| | | |||  || |||||||||||||  ||||| ||| ||      
T  21016133 acaaatcacaatatataggttcatgttccatatcatccggcaaagacatgtcgaaaagttttctttctatcaaatcaaaggcaatgataactttcattga 21016034  T
Q  458 taaatcatgatgaaaagccaaccaatgaatagccccattaaagagcgaccct 509  Q
    |||||||||| ||||||||||||||||||||||||||||||| | |||||||    
T  21016033 taaatcatgacgaaaagccaaccaatgaatagccccattaaaaaccgaccct 21015982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 722 - 776
Target Start/End: Complemental strand, 21015766 - 21015712
Alignment:
Q  722 aggagacaaaggtatttgtttgtgaaatccagtggaaggattccataggtagatg 776  Q
    |||||||||||||||||||||||||| || |||||| ||||||||||||||||||    
T  21015766 aggagacaaaggtatttgtttgtgaactctagtggatggattccataggtagatg 21015712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 536 - 609
Target Start/End: Original strand, 21979561 - 21979634
Alignment:
Q  536 attcgtataagggaagtgagttccctcaatttgtttccatgtattatctctcaatgagaaaatctctaaatgtg 609  Q
    |||| |||||||||| ||||  ||||||||||||||||| |||||||||||||| ||||||| ||| |||||||    
T  21979561 attcatataagggaaatgagcaccctcaatttgtttccaggtattatctctcaaagagaaaacctccaaatgtg 21979634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 543 - 611
Target Start/End: Complemental strand, 21015954 - 21015886
Alignment:
Q  543 taagggaagtgagttccctcaatttgtttccatgtattatctctcaatgagaaaatctctaaatgtgat 611  Q
    ||||||||| |||| |||||||||| ||||||  ||||||||||||| ||||||| |||||| ||||||    
T  21015954 taagggaagggagtaccctcaatttctttccacctattatctctcaacgagaaaaactctaactgtgat 21015886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 559 - 610
Target Start/End: Original strand, 14197610 - 14197661
Alignment:
Q  559 cctcaatttgtttccatgtattatctctcaatgagaaaatctctaaatgtga 610  Q
    |||||| || |||||| ||||||| |||||||||||||||||| ||||||||    
T  14197610 cctcaagttctttccaagtattatttctcaatgagaaaatctccaaatgtga 14197661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 274 - 303
Target Start/End: Original strand, 21979296 - 21979325
Alignment:
Q  274 gcactttgtattctttcatcacccatattt 303  Q
    ||||||||||||||||||||||||||||||    
T  21979296 gcactttgtattctttcatcacccatattt 21979325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 44 - 200
Target Start/End: Original strand, 4030184 - 4030340
Alignment:
Q  44 ctcattcttcttatttgtgccatcttcctaaacttgcttaatgtcaccagggagtgaaagtagagactctacatacaaggccacttgggatccatgtaga 143  Q
    |||||||||||| |||| | ||||||| ||| |||||| | ||| ||||||||||||||| |||||||||   |||| || |||||| ||||||  |  |    
T  4030184 ctcattcttcttgtttgagtcatcttcttaagcttgctcattgttaccagggagtgaaagcagagactctgtgtacatggtcacttgagatccaaatcca 4030283  T
Q  144 tccttacagcaggagtgatactctaggaactgtcctttgtcattatacttcaccaat 200  Q
    || ||  |  || || ||| |||||| |||||||||||||||| |||||||||||||    
T  4030284 tcattgtaatagcagcgatgctctagcaactgtcctttgtcatcatacttcaccaat 4030340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 427 - 509
Target Start/End: Original strand, 4031727 - 4031809
Alignment:
Q  427 ttaaatcaaaggcaacaataacattctttcttaaatcatgatgaaaagccaaccaatgaatagccccattaaagagcgaccct 509  Q
    |||||||||||||||| ||||||||  |   |||||||||| |||||||||||||||||||||  ||| |||| |||||||||    
T  4031727 ttaaatcaaaggcaacgataacatttatcgataaatcatgacgaaaagccaaccaatgaatagatccactaaaaagcgaccct 4031809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 258 - 306
Target Start/End: Original strand, 4031578 - 4031626
Alignment:
Q  258 ttagtccaagacaaatgcactttgtattctttcatcacccatatttcaa 306  Q
    |||||||||||| |||||| ||||||||||||||| |||||||||||||    
T  4031578 ttagtccaagacgaatgcattttgtattctttcataacccatatttcaa 4031626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 459 - 502
Target Start/End: Complemental strand, 15349082 - 15349039
Alignment:
Q  459 aaatcatgatgaaaagccaaccaatgaatagccccattaaagag 502  Q
    |||||| |||||||||||||||||||||||||||||||| ||||    
T  15349082 aaatcacgatgaaaagccaaccaatgaatagccccattatagag 15349039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 648 - 825
Target Start/End: Complemental strand, 15348896 - 15348719
Alignment:
Q  648 accatcaagtaatcatctcttgagtggtcatacccaaaaccataaaaataatttacgaatgaattgaaaccataaggagacaaaggtatttgtttgtgaa 747  Q
    |||| ||||||||||||| || | ||||||||||| |||| ||| ||||| |   ||  | | || ||||||  ||| |||||||||| || | ||||||    
T  15348896 accaccaagtaatcatcttttaattggtcatacccgaaactatagaaatattcagcgtctaatttcaaaccaataggggacaaaggtacttttctgtgaa 15348797  T
Q  748 atccagtggaaggattccataggtagatggtgaaagaacagtgcaaaagtacaaaccctcttcacgaacctataattt 825  Q
    |||| ||||| ||||||||||| |||| | |  || || ||| |||||||||||| ||||| || |||||| ||||||    
T  15348796 atccggtggatggattccatagatagaggattgaataatagttcaaaagtacaaagcctctacatgaacctttaattt 15348719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 271 - 358
Target Start/End: Original strand, 4962184 - 4962274
Alignment:
Q  271 aatgcactttgtattctttcatcacccatatttcaaatttattatcg---taatccaaagcccataggctaagaaattctccaaataccca 358  Q
    |||||| ||||||||||||||||||||||||||||| | ||  || |   |||||||   ||||||| || ||||||||||||||||||||    
T  4962184 aatgcagtttgtattctttcatcacccatatttcaactctacaattgcgataatccatgccccatagactgagaaattctccaaataccca 4962274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 275 - 307
Target Start/End: Complemental strand, 15349275 - 15349243
Alignment:
Q  275 cactttgtattctttcatcacccatatttcaaa 307  Q
    |||||||||||||||||||||||||||||||||    
T  15349275 cactttgtattctttcatcacccatatttcaaa 15349243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 721 - 775
Target Start/End: Complemental strand, 12200265 - 12200211
Alignment:
Q  721 aaggagacaaaggtatttgtttgtgaaatccagtggaaggattccataggtagat 775  Q
    |||||||||||||||||| ||||||||| | || ||| |||||||||| ||||||    
T  12200265 aaggagacaaaggtatttttttgtgaaacctagaggatggattccatacgtagat 12200211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 721 - 775
Target Start/End: Complemental strand, 12444693 - 12444639
Alignment:
Q  721 aaggagacaaaggtatttgtttgtgaaatccagtggaaggattccataggtagat 775  Q
    |||||||||||||||||| ||||||||| | || ||| |||||||||| ||||||    
T  12444693 aaggagacaaaggtatttttttgtgaaacctagaggatggattccatacgtagat 12444639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 131
Target Start/End: Original strand, 4961915 - 4962004
Alignment:
Q  42 acctcattcttcttatttgtgccatcttcctaaacttgcttaatgtcaccagggagtgaaagtagagactctacatacaaggccacttgg 131  Q
    |||| ||||||||||||| || ||||||| ||||||||||  | |||| || || ||||||| | |||||||  ||||| ||||||||||    
T  4961915 acctgattcttcttatttatgtcatcttcataaacttgctcgaggtcaacatggggtgaaagcaaagactctgtatacatggccacttgg 4962004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 472 - 501
Target Start/End: Complemental strand, 12195513 - 12195484
Alignment:
Q  472 aagccaaccaatgaatagccccattaaaga 501  Q
    ||||||||||||||||||||||||||||||    
T  12195513 aagccaaccaatgaatagccccattaaaga 12195484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 472 - 501
Target Start/End: Complemental strand, 12439941 - 12439912
Alignment:
Q  472 aagccaaccaatgaatagccccattaaaga 501  Q
    ||||||||||||||||||||||||||||||    
T  12439941 aagccaaccaatgaatagccccattaaaga 12439912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 200
Target Start/End: Complemental strand, 29351089 - 29350931
Alignment:
Q  42 acctcattcttcttatttgtgccatcttcctaaacttgcttaatgtcaccagggagtgaaagtagagactctacatacaaggccacttgggatccatgta 141  Q
    |||||||||||||| |||| | ||||||| ||| |||||| | ||||||| ||||||||||| | |||||||   |||| | |||||| |||||||  |     
T  29351089 acctcattcttcttgtttgagtcatcttcttaagcttgctcattgtcaccggggagtgaaagcatagactctctgtacatgaccacttcggatccacatc 29350990  T
Q  142 gatccttacagcaggagtgatactctaggaactgtcctttgtcattatacttcaccaat 200  Q
     ||| ||  |  || || ||| |||||| |||||||||||||||| |||||||||||||    
T  29350989 catcattgtaatagcagcgatgctctagcaactgtcctttgtcataatacttcaccaat 29350931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 559 - 600
Target Start/End: Complemental strand, 21426529 - 21426488
Alignment:
Q  559 cctcaatttgtttccatgtattatctctcaatgagaaaatct 600  Q
    ||||||||||||||||| ||| | ||||||||||||||||||    
T  21426529 cctcaatttgtttccatttatgagctctcaatgagaaaatct 21426488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 254 - 362
Target Start/End: Complemental strand, 24310629 - 24310521
Alignment:
Q  254 agttttagtccaagacaaatgcactttgtattctttcatcacccatatttcaaatttattatcgtaatccaaagcccataggctaagaaattctccaaat 353  Q
    ||||||| |||||||  | ||||||||||||||||||||||||||||| |||| |||||  ||||    || | ||||||| || |||||| ||| ||||    
T  24310629 agttttactccaagaagactgcactttgtattctttcatcacccatatatcaactttatcctcgtccctcataacccatagactgagaaatcctctaaat 24310530  T
Q  354 acccataaa 362  Q
    |||||||||    
T  24310529 acccataaa 24310521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 254 - 301
Target Start/End: Complemental strand, 24367578 - 24367531
Alignment:
Q  254 agttttagtccaagacaaatgcactttgtattctttcatcacccatat 301  Q
    |||||||||||||||| |||||||||||||||||| ||| ||||||||    
T  24367578 agttttagtccaagacgaatgcactttgtattcttccattacccatat 24367531  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 112
Target Start/End: Complemental strand, 24341081 - 24341008
Alignment:
Q  39 actacctcattcttcttatttgtgccatcttcctaaacttgcttaatgtcaccagggagtgaaagtagagactc 112  Q
    |||| |||||||||||| |||||||||||||| ||| ||| || | |||||| |||||||||||| | ||||||    
T  24341081 actaactcattcttcttgtttgtgccatcttcttaagcttcctcattgtcactagggagtgaaagcaaagactc 24341008  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 112
Target Start/End: Complemental strand, 24353446 - 24353373
Alignment:
Q  39 actacctcattcttcttatttgtgccatcttcctaaacttgcttaatgtcaccagggagtgaaagtagagactc 112  Q
    |||| |||||||||||| |||||||||||||| ||| ||| || | |||||| |||||||||||| | ||||||    
T  24353446 actaactcattcttcttgtttgtgccatcttcttaagcttcctcattgtcactagggagtgaaagcaaagactc 24353373  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 425 - 501
Target Start/End: Complemental strand, 24310446 - 24310370
Alignment:
Q  425 aattaaatcaaaggcaacaataacattctttcttaaatcatgatgaaaagccaaccaatgaatagccccattaaaga 501  Q
    |||||||| ||||| ||||||||||| ||  | || ||||||| ||| ||||||||| |||||||||||||| ||||    
T  24310446 aattaaatgaaaggaaacaataacatactcgcatacatcatgacgaatagccaaccagtgaatagccccattgaaga 24310370  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 24416191 - 24416139
Alignment:
Q  254 agttttagtccaagacaaatgcactttgtattctttcatcacccatatttcaa 306  Q
    |||||||||||||||  | ||| ||||||||||||||||||||||||| ||||    
T  24416191 agttttagtccaagatgactgccctttgtattctttcatcacccatatatcaa 24416139  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 638 - 695
Target Start/End: Complemental strand, 24352823 - 24352766
Alignment:
Q  638 tgaaattgataccatcaagtaatcatctcttgagtggtcatacccaaaaccataaaaa 695  Q
    ||||| ||| |||| ||||||||||| | |||| | ||||||||||||||||||||||    
T  24352823 tgaaactgaaaccaccaagtaatcatatgttgattcgtcatacccaaaaccataaaaa 24352766  T

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Target: scaffold1051 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold1051
Description:

Target: scaffold1051; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 560 - 601
Target Start/End: Original strand, 1991 - 2032
Alignment:
Q  560 ctcaatttgtttccatgtattatctctcaatgagaaaatctc 601  Q
    |||||||||||||||  ||||| |||||||||||||||||||    
T  1991 ctcaatttgtttccacttattagctctcaatgagaaaatctc 2032  T

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