View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4542_low_11 (Length: 321)
Name: NF4542_low_11
Description: NF4542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4542_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 11 - 308
Target Start/End: Complemental strand, 4997110 - 4996809
Alignment:
| Q |
11 |
atcatcataaataccggtttctgtgaggtcgattgatacaacggatttattccacgaatcgcaggttatgcctctccagttacaaggatt--gatctgtg |
108 |
Q |
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| T |
4997110 |
atcaccataaataccggtttctgtgaggtcgattgatacaacggatttattccgcgaatcgcaggttatgcctctccagttacaaggattatgatctgtg |
4997011 |
T |
|
| Q |
109 |
tttggaagccaatcattgagacttttgtttttgtcatcaatttgtgtgttctttacatgaagaagaatttcatagtctcttgagagtgaaaaggtggttc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4997010 |
tttggaagccaatcattgagacttttgtttttgtcatcaatttgtgtgttctttacatgaagaagaatttcatagtctcttgagagtgaaaaggtggttc |
4996911 |
T |
|
| Q |
209 |
catttgaacatagtagtgaaaagagaagaatgaaaatgagttttttcatgttgtgaat--ttttggtagtgtgtgtgagaggatgagaatgatcatgttt |
306 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
4996910 |
catttgaacatactagtgaaaagagaagaatgaaaatgagttttttcatgttgtgaatttttttggtagtgtgtgtgagaggatgagaatgatcgtgttt |
4996811 |
T |
|
| Q |
307 |
tt |
308 |
Q |
| |
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|| |
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| T |
4996810 |
tt |
4996809 |
T |
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