View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4542_low_13 (Length: 293)
Name: NF4542_low_13
Description: NF4542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4542_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 36168083 - 36167842
Alignment:
| Q |
1 |
tataaaactatactaacaattatttgagagaataaattattacttaactgttacnnnnnnnnnnctatagcagaaaccatagattacattaacttcatta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
36168083 |
tataaaactatactaacaattatttgagagaataaattattacttaactgttactttttttt--ccatagcagaaaccatagattacattaacttcatta |
36167986 |
T |
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| Q |
101 |
gaataagttggttgtagctttagtttgataaacttttt-agtataattaaaaatgttgtttagttagagtgatactaaatcatgtctgacaaactgaatc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
36167985 |
gaataagttggttgtagctttagtttgataaacttttttagtataattaaaaatgcagtttagttaaagtgatactaaatcatgtctgacaaactgaatc |
36167886 |
T |
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| Q |
200 |
ctctggagtttcttcatctcagatttaatcacttccacgcttgt |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36167885 |
ctctggagtttcttcatctcagatttaatcacttccacgcttgt |
36167842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 244 - 289
Target Start/End: Complemental strand, 36167818 - 36167773
Alignment:
| Q |
244 |
ttaatcaagtcgtaaaattagatttgaaagtgttaactaattgcaa |
289 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
36167818 |
ttaatcaagtcataaaattagatttgaaagtgttaactaattgcaa |
36167773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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