View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4542_low_18 (Length: 242)
Name: NF4542_low_18
Description: NF4542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4542_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 10 - 223
Target Start/End: Original strand, 49951871 - 49952090
Alignment:
| Q |
10 |
catcatcacccccttagcatctgtcacattttgttatcattgaacagatcaacacaatcacacacagaatctctctctcactctcattagaaaccatctt |
109 |
Q |
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| T |
49951871 |
catcatcacccccttagcatctgtcacattttgttatcattgaacagatcaacacaatcacacacagaatctctctctcactctcattagaaaccatctt |
49951970 |
T |
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| Q |
110 |
gaaaccgattgatcaatgctgctgaattaggagtatttgtatctaaacgatgctgctgtcctcct------cctcctgaatagctccttccccaattcaa |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
49951971 |
gaaaccgattgatcaatgctgctgaattaggagtatttgtatctaaacgatgctgctgtcctcctcctccacctcctgaatagctccttccccaattcaa |
49952070 |
T |
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| Q |
204 |
tgtcccttccatatcttgat |
223 |
Q |
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|||||||||||||||||||| |
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| T |
49952071 |
tgtcccttccatatcttgat |
49952090 |
T |
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