View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4542_low_2 (Length: 759)

Name: NF4542_low_2
Description: NF4542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4542_low_2
NF4542_low_2
[»] chr1 (2 HSPs)
chr1 (22-739)||(24142278-24142997)
chr1 (60-113)||(40974721-40974774)
[»] chr2 (3 HSPs)
chr2 (412-492)||(20625647-20625727)
chr2 (282-347)||(16362888-16362953)
chr2 (426-468)||(16363037-16363079)
[»] scaffold0391 (1 HSPs)
scaffold0391 (388-494)||(604-711)
[»] chr4 (2 HSPs)
chr4 (532-627)||(21118225-21118320)
chr4 (571-626)||(18954443-18954498)
[»] chr6 (6 HSPs)
chr6 (282-336)||(9030704-9030758)
chr6 (412-468)||(1771900-1771956)
chr6 (26-113)||(1771499-1771586)
chr6 (292-347)||(1771775-1771830)
chr6 (152-239)||(9030477-9030564)
chr6 (282-332)||(9030630-9030680)
[»] chr7 (3 HSPs)
chr7 (297-346)||(42229445-42229494)
chr7 (430-473)||(42229583-42229626)
chr7 (583-617)||(20216363-20216397)


Alignment Details
Target: chr1 (Bit Score: 591; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 22 - 739
Target Start/End: Complemental strand, 24142997 - 24142278
Alignment:
Q  22 gggcaggggaaggggccgccttgctgaccctgcgcctaaggtgcacgagcctgagacgcagcccgagaagcaccatatggaggaggaggaggtggagaac 121  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24142997 gggcatgggcaggggccgccttgctgaccctgcgcctaaggtgcacgagcctgagacgcagcccgagaagcaccatatggaggaggaggaggtggagaac 24142898  T
Q  122 acagatgatgttgatgagcagccgcaggtcgaggtggaggtggagcctcaacagcttcatgactatcatggtggcctgaatgacgtgtttgtgctcaccc 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  24142897 acagatgatgttgatgagcagccgcaggtcgaggtggaggtggagcctcaacagcttcatgactatcatggtggcctaaatgacgtgtttgtgctcaccc 24142798  T
Q  222 aataccatcttcatgtggtaagattctacatttttaacttttttgtactannnnnnnnnn--atgtaatctgaaggctatgtttatttttatttgtgtaa 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||            |||||| |||||||||||||||||||||||||||||||    
T  24142797 aataccatcttcatgtggtaagattctacatttttaacttttttgtactattttttttttttatgtaagctgaaggctatgtttatttttatttgtgtaa 24142698  T
Q  320 actaaagtgaatcgtatcatgatattaannnnnnnnnnnnncatttctgcagtggcgtgtcaacttaatgtgaataacggaaaaaagctactgctataca 419  Q
    ||||| ||||||||||||||||||||||             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24142697 actaacgtgaatcgtatcatgatattaattttttgttttttcatttctgcagtggcgtgtcaacttaatgtgaataacggaaaaaagctactgctataca 24142598  T
Q  420 agaactaaatttggataggatgcaagagtgatggttcaaaaatgccatgtgagccggtggacttcagtggctacagtcagttatcctatcctttaccacg 519  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24142597 agaactaaatttggataggatgcaagagtgatggttcaaaaatgccatgtgagccggtggacttcagtggctacagtcagttatcctatcctttaccacg 24142498  T
Q  520 attttttatctacttttgttgggagatggaacgaggaagcgtctaacttcaatcttccaattagggagatgacaataacacttgatgatgtgtcttgtct 619  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24142497 attttttatctacttttgttgggagatggaacgaggaggtgtctaacttcaatcttccaattagggagatgacaataacacttgatgatgtgtcttgtct 24142398  T
Q  620 actgcatcccccattaatggtctcatattggaccataaacttcctatttctaggtctgagggtatgatgtggacgaggctaatagcaggtcnnnnnnnca 719  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||    
T  24142397 actgcatcccccattaatggtctcatattggaccataaacttcctatttctaggtctgagggtatgatgtggacgaggctaatagcaggtcaaaaaaaca 24142298  T
Q  720 aagggtgctcatgcacgttt 739  Q
    ||||||||||||||||||||    
T  24142297 aagggtgctcatgcacgttt 24142278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 113
Target Start/End: Original strand, 40974721 - 40974774
Alignment:
Q  60 aggtgcacgagcctgagacgcagcccgagaagcaccatatggaggaggaggagg 113  Q
    ||||| ||||||||||| | |||||||||||| |||||||||||||||||||||    
T  40974721 aggtgaacgagcctgagccccagcccgagaagtaccatatggaggaggaggagg 40974774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 412 - 492
Target Start/End: Original strand, 20625647 - 20625727
Alignment:
Q  412 gctatacaagaactaaatttggataggatgcaagagtgatggttcaaaaatgccatgtgagccggtggacttcagtggcta 492  Q
    ||||||||||||| | || ||||||||||||||||| ||||||||||| | ||||||||| ||  ||||||||||||||||    
T  20625647 gctatacaagaaccagatgtggataggatgcaagagcgatggttcaaagaggccatgtgatccaatggacttcagtggcta 20625727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 282 - 347
Target Start/End: Original strand, 16362888 - 16362953
Alignment:
Q  282 atgtaatctgaaggctatgtttatttttatttgtgtaaactaaagtgaatcgtatcatgatattaa 347  Q
    |||||| ||||| |||||| |||||||||||| |||||||| || |||||| ||||||||||||||    
T  16362888 atgtaaactgaatgctatgattatttttatttatgtaaactgaattgaatcatatcatgatattaa 16362953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 426 - 468
Target Start/End: Original strand, 16363037 - 16363079
Alignment:
Q  426 aaatttggataggatgcaagagtgatggttcaaaaatgccatg 468  Q
    |||||||||||| |||||||| |||||||||||| ||||||||    
T  16363037 aaatttggatagcatgcaagaatgatggttcaaagatgccatg 16363079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 388 - 494
Target Start/End: Complemental strand, 711 - 604
Alignment:
Q  388 tgtgaataacggaaaaaagctactg-ctatacaagaactaaatttggataggatgcaagagtgatggttcaaaaatgccatgtgagccggtggacttcag 486  Q
    |||||| ||||| |||||||||||| |||||||||||| | ||||||||||||||||||||  |||| ||||| ||| |||| |||   ||||||||||     
T  711 tgtgaacaacggcaaaaagctactggctatacaagaaccacatttggataggatgcaagagcaatgggtcaaagatgtcatgcgagtaagtggacttcaa 612  T
Q  487 tggctaca 494  Q
    ||||||||    
T  611 tggctaca 604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 532 - 627
Target Start/End: Original strand, 21118225 - 21118320
Alignment:
Q  532 cttttgttgggagatggaacgaggaagcgtctaacttcaatcttccaattagggagatgacaataacacttgatgatgtgtcttgtctactgcatc 627  Q
    |||||||||  ||||||||||||||  |||||| |||| || || | |||| |||||| ||||| ||||||||||||||||| ||| | |||||||    
T  21118225 cttttgttgaaagatggaacgaggagacgtctagcttccatttttcgattaaggagataacaatgacacttgatgatgtgtcatgtttgctgcatc 21118320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 571 - 626
Target Start/End: Complemental strand, 18954498 - 18954443
Alignment:
Q  571 atcttccaattagggagatgacaataacacttgatgatgtgtcttgtctactgcat 626  Q
    |||||||| || ||||||||||||| | ||| ||||||||||| ||||||||||||    
T  18954498 atcttccagttggggagatgacaatgatactggatgatgtgtcatgtctactgcat 18954443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 282 - 336
Target Start/End: Original strand, 9030704 - 9030758
Alignment:
Q  282 atgtaatctgaaggctatgtttatttttatttgtgtaaactaaagtgaatcgtat 336  Q
    |||||| ||||||||||||||||||||||||| ||||||||  | ||||||||||    
T  9030704 atgtaagctgaaggctatgtttatttttatttttgtaaactggattgaatcgtat 9030758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 412 - 468
Target Start/End: Original strand, 1771900 - 1771956
Alignment:
Q  412 gctatacaagaactaaatttggataggatgcaagagtgatggttcaaaaatgccatg 468  Q
    |||||||||||   |||||||||||||||||||||| |||| |||||| ||||||||    
T  1771900 gctatacaagagtcaaatttggataggatgcaagagcgatgattcaaagatgccatg 1771956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 113
Target Start/End: Original strand, 1771499 - 1771586
Alignment:
Q  26 aggggaaggggccgccttgctgaccctgcgcctaaggtgcacgagcctgagacgcagcccgagaagcaccatatggaggaggaggagg 113  Q
    |||||||||| ||||| | ||||  ||| |||||||||| ||||||||||| | ||||||||| |  |  ||||||||||||||||||    
T  1771499 aggggaagggaccgccgttctgagtctgagcctaaggtgtacgagcctgagccccagcccgagcaatattatatggaggaggaggagg 1771586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 292 - 347
Target Start/End: Original strand, 1771775 - 1771830
Alignment:
Q  292 aaggctatgtttatttttatttgtgtaaactaaagtgaatcgtatcatgatattaa 347  Q
    ||||||||||||| |||||| |  |||||||||| |||||||| ||||||||||||    
T  1771775 aaggctatgtttaattttatataagtaaactaaactgaatcgtgtcatgatattaa 1771830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 239
Target Start/End: Original strand, 9030477 - 9030564
Alignment:
Q  152 gaggtggaggtggagcctcaacagcttcatgactatcatggtggcctgaatgacgtgtttgtgctcacccaataccatcttcatgtgg 239  Q
    ||||||||||||||||| |||| |||  |||| |||| || ||||     |||| ||| |||||||||||||||||||||||||||||    
T  9030477 gaggtggaggtggagccacaaccgctaaatgaatatcttgatggcgcacgtgacttgtctgtgctcacccaataccatcttcatgtgg 9030564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 282 - 332
Target Start/End: Original strand, 9030630 - 9030680
Alignment:
Q  282 atgtaatctgaaggctatgtttatttttatttgtgtaaactaaagtgaatc 332  Q
    |||||| ||||||| ||||||||||||||||| |||||||| || ||||||    
T  9030630 atgtaaactgaaggttatgtttatttttatttatgtaaactgaattgaatc 9030680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 297 - 346
Target Start/End: Original strand, 42229445 - 42229494
Alignment:
Q  297 tatgtttatttttatttgtgtaaactaaagtgaatcgtatcatgatatta 346  Q
    ||||||||||||||||| |||||||| || |||||||||||||| |||||    
T  42229445 tatgtttatttttatttatgtaaacttaactgaatcgtatcatgctatta 42229494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 430 - 473
Target Start/End: Original strand, 42229583 - 42229626
Alignment:
Q  430 ttggataggatgcaagagtgatggttcaaaaatgccatgtgagc 473  Q
    |||||||||||||||||||||||||||||| || ||| ||||||    
T  42229583 ttggataggatgcaagagtgatggttcaaagataccacgtgagc 42229626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 583 - 617
Target Start/End: Complemental strand, 20216397 - 20216363
Alignment:
Q  583 gggagatgacaataacacttgatgatgtgtcttgt 617  Q
    ||||||||||||| |||||||||||||||||||||    
T  20216397 gggagatgacaatgacacttgatgatgtgtcttgt 20216363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University