View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4542_low_24 (Length: 220)

Name: NF4542_low_24
Description: NF4542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4542_low_24
NF4542_low_24
[»] chr3 (15 HSPs)
chr3 (15-201)||(2760111-2760297)
chr3 (15-201)||(2819457-2819643)
chr3 (20-199)||(2749894-2750073)
chr3 (37-199)||(5413785-5413947)
chr3 (15-199)||(2791219-2791397)
chr3 (38-199)||(2808166-2808327)
chr3 (30-199)||(2854880-2855049)
chr3 (20-199)||(2837660-2837839)
chr3 (16-199)||(2769968-2770145)
chr3 (22-199)||(2798260-2798437)
chr3 (38-118)||(3356444-3356524)
chr3 (35-94)||(3321307-3321366)
chr3 (15-96)||(3303000-3303081)
chr3 (20-96)||(3201934-3202010)
chr3 (30-118)||(3722512-3722600)
[»] scaffold0691 (1 HSPs)
scaffold0691 (20-193)||(5212-5385)
[»] chr1 (1 HSPs)
chr1 (38-89)||(4257719-4257770)


Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 15 - 201
Target Start/End: Complemental strand, 2760297 - 2760111
Alignment:
Q  15 catcatcatgcatacaatggcagaaactcaaatccttcatttttctaatgatcacttcccgcaataaatcatggacttgacatgtatgtactttcccttc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2760297 catcatcatgcatacaatggcagaaactcaaatccttcatttttctaatgatcacttcccgcaataaatcatggacttgacatgtatgtactttcccttc 2760198  T
Q  115 aaagttaacatccgagacttggactagacttctctgaatcaattcagacaagtactcctctgcaacttgctctggagttcttctccc 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2760197 aaagttaacatccgagacttggactagacttctctgaatcaattcagacaagtactcctctgcaacttgctctggagttcttctccc 2760111  T

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Target: chr3; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 15 - 201
Target Start/End: Complemental strand, 2819643 - 2819457
Alignment:
Q  15 catcatcatgcatacaatggcagaaactcaaatccttcatttttctaatgatcacttcccgcaataaatcatggacttgacatgtatgtactttcccttc 114  Q
    |||||||||||| |||||| || || || |||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||  ||||| |||||    
T  2819643 catcatcatgcacacaatgacaaaatcttaaatcctttatttttgtaatgatcacttcccgcaataaatcatggacttgacatttatcaactttaccttc 2819544  T
Q  115 aaagttaacatccgagacttggactagacttctctgaatcaattcagacaagtactcctctgcaacttgctctggagttcttctccc 201  Q
    ||||| ||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2819543 aaagtcaacatccgagacttgaaccagacttctctgaatcagttcagacaagtactcctctgcaacttgctctggagttcttctccc 2819457  T

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Target: chr3; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 20 - 199
Target Start/End: Complemental strand, 2750073 - 2749894
Alignment:
Q  20 tcatgcatacaatggcagaaactcaaatccttcatttttctaatgatcacttcccgcaataaatcatggacttgacatgtatgtactttcccttcaaagt 119  Q
    |||||||| ||||| | |||| | ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| || ||||| |||||||||     
T  2750073 tcatgcatgcaatgaccgaaatttaaatccttcatttttctaatgatcaattcccgcattaaatcatggacttgacatgtttgaacttttccttcaaagc 2749974  T
Q  120 taacatccgagacttggactagacttctctgaatcaattcagacaagtactcctctgcaacttgctctggagttcttctc 199  Q
     |||||  ||||| || || | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2749973 caacatttgagacctgaaccaaacttctctgaatcaattcagacaagtactcttctgcaacttgctctggagttcttctc 2749894  T

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Target: chr3; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 37 - 199
Target Start/End: Complemental strand, 5413947 - 5413785
Alignment:
Q  37 gaaactcaaatccttcatttttctaatgatcacttcccgcaataaatcatggacttgacatgtatgtactttcccttcaaagttaacatccgagacttgg 136  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| || ||||| |||||||||  |||||  ||||| ||     
T  5413947 gaaacttaaatccttcatttttctaatgatcacttcccgcagtaaatcatgtacttgacatgtttgaacttttccttcaaagccaacatttgagacctga 5413848  T
Q  137 actagacttctctgaatcaattcagacaagtactcctctgcaacttgctctggagttcttctc 199  Q
    || |||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  5413847 accagacttctttgaatcaattcagacaagtattcctctgcaacttgctccggagttcttctc 5413785  T

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Target: chr3; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 15 - 199
Target Start/End: Complemental strand, 2791397 - 2791219
Alignment:
Q  15 catcatcatgcatacaatggcagaaactcaaatccttcatttttctaatgatcacttcccgcaataaatcatggacttgacatgtatgtactttcccttc 114  Q
    |||||||||||| |||||| |||||||| || |||||||||||||| ||||  |||||||  ||||||||||||||||||||||| || |||||||||||    
T  2791397 catcatcatgcacacaatgacagaaacttaagtccttcatttttctgatgagaacttcccagaataaatcatggacttgacatgtttgaactttcccttc 2791298  T
Q  115 aaagttaacatccgagacttggactagacttctctgaatcaattcagacaagtactcctctgcaacttgctctggagttcttctc 199  Q
          ||||   |||||||| |||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  2791297 ------aacaattgagacttgaactaaacttctatgaatcaattcagacaagtactcctctgcaacttcctctggagttcgtctc 2791219  T

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Target: chr3; HSP #6
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 38 - 199
Target Start/End: Complemental strand, 2808327 - 2808166
Alignment:
Q  38 aaactcaaatccttcatttttctaatgatcacttcccgcaataaatcatggacttgacatgtatgtactttcccttcaaagttaacatccgagacttgga 137  Q
    ||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||| | || ||||| |||||||||  |||||  ||||| || |    
T  2808327 aaacttaaatccttcattttcctaatgatcacttgccgcaataaatcatggacttgacatatttgaacttttccttcaaagccaacatttgagacctgaa 2808228  T
Q  138 ctagacttctctgaatcaattcagacaagtactcctctgcaacttgctctggagttcttctc 199  Q
    | |||||||| |||||||||||| ||||||| |||||||| |  ||||||||||||||||||    
T  2808227 ccagacttctgtgaatcaattcatacaagtattcctctgctatatgctctggagttcttctc 2808166  T

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Target: chr3; HSP #7
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 30 - 199
Target Start/End: Original strand, 2854880 - 2855049
Alignment:
Q  30 aatggcagaaactcaaatccttcatttttctaatgatcacttcccgcaataaatcatggacttgacatgtatgtactttcccttcaaagttaacatccga 129  Q
    |||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||  |||||  ||    
T  2854880 aatgacagaaacttaaattcttcatttttctaatgatcacttcccgcaataaatcatggacttgacatgttttaactttcccttcaaagccaacatttga 2854979  T
Q  130 gacttggactagacttctctgaatcaattcagacaagtactcctctgcaacttgctctggagttcttctc 199  Q
    ||| || |  |||||||| ||||||||||| |||||||| ||||| || ||||||||   ||||||||||    
T  2854980 gacctgaatcagacttctgtgaatcaattctgacaagtattcctcagccacttgctccaaagttcttctc 2855049  T

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Target: chr3; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 199
Target Start/End: Original strand, 2837660 - 2837839
Alignment:
Q  20 tcatgcatacaatggcagaaactcaaatccttcatttttctaatgatcacttcccgcaataaatcatggacttgacatgtatgtactttcccttcaaagt 119  Q
    ||||||| | |||| |||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |  |||||||||||||||     
T  2837660 tcatgcacaaaatgacagaaacttaaattcttcatttttctaatgataacttcccgcaataaatcatggacttgacatgttttaactttcccttcaaagc 2837759  T
Q  120 taacatccgagacttggactagacttctctgaatcaattcagacaagtactcctctgcaacttgctctggagttcttctc 199  Q
     |||||  ||||| || |  |||||||| ||||||||||| |||||||| ||||| || ||||||||   ||||||||||    
T  2837760 caacatttgagacctgaatcagacttctgtgaatcaattctgacaagtattcctcagccacttgctccaaagttcttctc 2837839  T

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Target: chr3; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 199
Target Start/End: Complemental strand, 2770145 - 2769968
Alignment:
Q  16 atcatcatgcatacaatggcagaaactcaaatccttcatttttctaatgatcacttcccgcaataaatcatggacttgacatgtatgtactttcccttca 115  Q
    ||||||||||| |||||| |||||||| || |||||||||||| ||||||  |||||| | ||||||||||||||||||||||| || | |||||||||     
T  2770145 atcatcatgcacacaatgacagaaacttaagtccttcatttttttaatgaaaacttcctggaataaatcatggacttgacatgtttgaattttcccttc- 2770047  T
Q  116 aagttaacatccgagacttggactagacttctctgaatcaattcagacaagtactcctctgcaacttgctctggagttcttctc 199  Q
         ||||   |||||||| |||| |||||| ||||||||||||||||||||||||||||||||||  ||||| |||| ||||    
T  2770046 -----aacaattgagacttgaactaaacttctatgaatcaattcagacaagtactcctctgcaacttcttctggggttcgtctc 2769968  T

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Target: chr3; HSP #10
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 22 - 199
Target Start/End: Complemental strand, 2798437 - 2798260
Alignment:
Q  22 atgcatacaatggcagaaactcaaatccttcatttttctaatgatcacttcccgcaataaatcatggacttgacatgtatgtactttcccttcaaagtta 121  Q
    ||||| |||||| ||||| || |||||||||||||||||||||| ||||||||| ||||||||||||||| | ||||| || ||||||||||||||   |    
T  2798437 atgcacacaatgacagaatcttaaatccttcatttttctaatgagcacttcccggaataaatcatggactcggcatgtttgaactttcccttcaaatcca 2798338  T
Q  122 acatccgagacttggactagacttctctgaatcaattcagacaagtactcctctgcaacttgctctggagttcttctc 199  Q
    ||||  ||||| || || | |||||| ||||| | ||||||||| ||||| |||||||||  |||| |||||| ||||    
T  2798337 acatttgagacctgaaccatacttctgtgaattagttcagacaaatactcttctgcaactatctcttgagttcgtctc 2798260  T

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Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 118
Target Start/End: Original strand, 3356444 - 3356524
Alignment:
Q  38 aaactcaaatccttcatttttctaatgatcacttcccgcaataaatcatggacttgacatgtatgtactttcccttcaaag 118  Q
    ||||| ||||| ||||||||| |||||| |||||| ||||| |||||||||||||||||| | |  |||||||| ||||||    
T  3356444 aaacttaaatctttcatttttttaatgaccacttcacgcaacaaatcatggacttgacatcttttaactttcccatcaaag 3356524  T

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Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 94
Target Start/End: Original strand, 3321307 - 3321366
Alignment:
Q  35 cagaaactcaaatccttcatttttctaatgatcacttcccgcaataaatcatggacttga 94  Q
    |||||||| ||||| ||||||||||||| ||||||||| ||||| |||||||| ||||||    
T  3321307 cagaaacttaaatctttcatttttctaaggatcacttcacgcaacaaatcatgaacttga 3321366  T

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Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 3303000 - 3303081
Alignment:
Q  15 catcatcatgcatacaatggcagaaactcaaatccttcatttttctaatgatcacttcccgcaataaatcatggacttgaca 96  Q
    |||| ||||||||  |||| ||||||||   ||| ||||||||| ||||||||||||| ||||| | |||||||||||||||    
T  3303000 catcttcatgcattaaatgacagaaactttgatctttcatttttttaatgatcacttcacgcaacacatcatggacttgaca 3303081  T

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Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 3202010 - 3201934
Alignment:
Q  20 tcatgcatacaatggcagaaactcaaatccttcatttttctaatgatcacttcccgcaataaatcatggacttgaca 96  Q
    ||||||||  ||||||| || || ||||| | ||||||||||| ||||||||| ||||| |||| ||||||||||||    
T  3202010 tcatgcattaaatggcaaaagcttaaatcttgcatttttctaaggatcacttcacgcaacaaattatggacttgaca 3201934  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 118
Target Start/End: Complemental strand, 3722600 - 3722512
Alignment:
Q  30 aatggcagaaactcaaatccttcatttttctaatgatcacttcccgcaataaatcatggacttgacatgtatgtactttcccttcaaag 118  Q
    ||||||| ||||| ||||| ||||||||| |||| | || ||| | ||| |||||||||||||||||| | |  |||||||| ||||||    
T  3722600 aatggcaaaaactaaaatctttcatttttttaataaccatttcacacaacaaatcatggacttgacatcttttaactttcccatcaaag 3722512  T

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Target: scaffold0691 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 20 - 193
Target Start/End: Original strand, 5212 - 5385
Alignment:
Q  20 tcatgcatacaatggcagaaactcaaatccttcatttttctaatgatcacttcccgcaataaatcatggacttgacatgtatgtactttcccttcaaagt 119  Q
    ||||||| |||||| || ||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||| ||||||     
T  5212 tcatgcacacaatgacaaaaagttaaatccttcatttttctaatgatcacttcacgcaataaatcatggacttgacatgtttgaactttcccctcaaagc 5311  T
Q  120 taacatccgagacttggactagacttctctgaatcaattcagacaagtactcctctgcaacttgctctggagtt 193  Q
     |||||  ||||| || || |||||||| ||||||||||||||||||||||| |||||||||||||| ||||||    
T  5312 caacatttgagacctgaaccagacttctgtgaatcaattcagacaagtactcatctgcaacttgctcgggagtt 5385  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 89
Target Start/End: Complemental strand, 4257770 - 4257719
Alignment:
Q  38 aaactcaaatccttcatttttctaatgatcacttcccgcaataaatcatgga 89  Q
    ||||||||||||||||||||||| ||||||| ||| || || ||||||||||    
T  4257770 aaactcaaatccttcatttttctcatgatcatttctcgtaacaaatcatgga 4257719  T

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